Table S2: Genes that are expressed higher in KM-D than PC1012 in murine kidneys

Gene / Fold Change1 / SEM2 / p-value / Function
c3343 / 113.9 / 56.0 / 0.03 / hypothetical
speE / 33.4 / 6.8 / 0.002 / spermidinesynthase
yedV / 29.0 / 9.6 / 0.02 / putative Z ring component
yheA / 25.3 / 6.3 / 0.02 / hypothetical
ydcN / 25.0 / 5.8 / 0.005 / putative transcriptional regulator
ycaI / 23.8 / 3.9 / 0.0008 / hypothetical
yjhD / 23.2 / 2.4 / 0.0001 / hypothetical
gltA / 21.2 / 4.4 / 0.003 / type II citrate synthase
ynbE / 20.6 / 3.7 / 0.004 / hypothetical lipoprotein
yadM / 20.0 / 4.7 / 0.003 / hypothetical adhesin
znuC / 18.9 / 8.1 / 0.04 / zinc transport
yddM / 18.8 / 3.8 / 0.003 / hypothetical transcriptional regulator
ybgL / 17.4 / 3.8 / 0.01 / hypothetical
intQ / 16.8 / 5.3 / 0.01 / hypothetical
fldA / 16.5 / 6.5 / 0.05 / flavoredoxin I
rhlE / 16.0 / 3.8 / 0.006 / ATP-dependent RNA helicase
fadK / 15.5 / 2.5 / 0.001 / fatty acid degradase
rob / 14.8 / 3.3 / 0.02 / transcription factor
rpsF / 14.5 / 4.4 / 0.05 / 30S ribosomal protein
marA / 14.5 / 5.2 / 0.005 / transcriptional regulator
ydgC / 14.2 / 3.1 / 0.03 / inner membrane protein
agaR / 14.2 / 2.5 / 0.007 / DNA binding transcription factor
glyA / 14.0 / 2.8 / 0.007 / serine hydroxymethltransferase
nikB / 14.0 / 4.5 / 0.02 / Ni-transporter
amtB / 13.5 / 3.5 / 0.02 / ammonium transport
cdsA / 13.4 / 3.6 / 0.01 / CDP-diglyceridesynthase
astD / 13.0 / 3.9 / 0.04 / succinylglutamicsemialdehyde
tsr / 12.9 / 3.7 / 0.04 / methyl-accepting chemotaxis protein
yjfF / 12.6 / 3.5 / 0.01 / predicted sugar transporter
yfbK / 12.5 / 2.2 / 0.002 / hypothetical
yjiG / 12.5 / 2.5 / 0.02 / hypothetical inner membrane protein
fdhF / 12.0 / 2.7 / 0.02 / selenopolypeptide subunit
pitA / 11.8 / 2.4 / 0.006 / low affinity phosphate transporter
galF / 11.8 / 2.9 / 0.02 / UPT-glucose-1-phospate uridyltransferase
tdcC / 11.7 / 2.1 / 0.01 / threonine/serine transporter
cydB / 11.2 / 4.1 / 0.04 / cytochrome D ubiquinoloxidase
hisC / 11.1 / 3.6 / 0.05 / histidinol-phoshateaminotransferase
recA / 10.8 / 3.5 / 0.03 / recombinase A
thiI / 10.7 / 2.3 / 0.008 / sulfurthransferase
ispA / 10.6 / 2.5 / 0.03 / geranyltransferase
malF / 10.6 / 3.7 / 0.05 / maltose transport
yfiR / 10.6 / 3.2 / 0.02 / hypothetical
purM / 10.6 / 3.0 / 0.05 / phosphoribosylaminoimidazolesynthetase
alr / 10.6 / 3.0 / 0.04 / alanineracemase
bfd / 10.5 / 2.9 / 0.05 / bacterioferritin-associated ferrodoxin
ilvG / 10.3 / 2.2 / 0.04 / acetolactatesynthase 2
csrC / 10.3 / 2.0 / 0.006 / small regulatory RNA
yliJ / 10.1 / 2.6 / 0.04 / putative transferase
ychJ / 9.9 / 2.3 / 0.02 / hypothetical
yifN / 9.7 / 2.2 / 0.02 / hypothetical
ybbA / 9.7 / 0.7 / 0.0002 / putative ABC transporter
yobB / 9.6 / 2.2 / 0.008 / hypothetical
yjgX / 9.6 / 2.4 / 0.04 / pseudo
pptA / 9.2 / 1.8 / 0.006 / 4-oxalocrotonate tautomerase
hcp / 9.2 / 2.2 / 0.009 / hydroxylamine reductase
tktA / 9.2 / 2.1 / 0.05 / transketolase
gadY / 9.1 / 2.6 / 0.02 / small regulatory RNA
mtgA / 9.0 / 2.8 / 0.03 / peptidoglycantransglycosylase
b1425 / 8.7 / 1.7 / 0.01 / hypothetical
yhbE / 8.6 / 2.1 / 0.05 / putatitive transport
bioD / 8.6 / 2.2 / 0.05 / putative dithiobiotinsynthase
ybbJ / 8.5 / 2.3 / 0.04 / hypothetical
nudF / 8.5 / 1.7 / 0.005 / ADP-ribose pyrophosphatase
gshB / 8.2 / 2.6 / 0.04 / glutathione synthetase
bcsG / 8.2 / 1.3 / 0.007 / predicted inner membrane protein
apt / 7.7 / 1.5 / 0.007 / adenine phosphoribosyltransferase
speC / 7.7 / 1.5 / 0.008 / ornitinedecarboxylase
hflK / 7.7 / 1.5 / 0.008 / ftsH protease regulator
yfiL / 7.5 / 0.4 / 0.00005 / hypothetical lipoprotein
ybiC / 7.4 / 1.8 / 0.05 / hypothetical dehydrogenase
ygiH / 7.2 / 1.1 / 0.003 / putative G-3-phosphate acyltransferase
hepA / 7.2 / 1.7 / 0.02 / ATP-dependent helicase
aroG / 6.9 / 1.1 / 0.005 / 3-deoxy-D-arabino-hepulosonate-7-phosphate synthase
rsd / 6.9 / 1.3 / 0.008 / anti-RNA polymerase sigma 70 factor
yejH / 6.9 / 1.9 / 0.03 / putative ATP-dependent helicase
ycbG / 6.8 / 2.0 / 0.03 / hypothetical
b2354 / 6.8 / 2.3 / 0.05 / prophage protein
prpE / 6.8 / 1.5 / 0.01 / propionylcoAsynthetase
rspA / 6.8 / 1.1 / 0.02 / starvation sensing protein
yphC / 6.7 / 1.5 / 0.04 / hypothetical
ybbN / 6.7 / 1.6 / 0.03 / putative thioredoxin like protein
pfkA / 6.7 / 0.7 / 0.0006 / 6-phosphofructoskinase
yijF / 6.6 / 1.7 / 0.03 / hypothetical
yafV / 6.5 / 1.9 / 0.04 / hypothetical
b2596 / 6.5 / 1.0 / 0.004 / hypothetical
gltD / 6.4 / 1.3 / 0.01 / glutamate synthase
hemL / 6.4 / 1.0 / 0.005 / glutamate-1-semialdehyde aminotransferase
yjfN / 6.3 / 1.5 / 0.02 / hypothetical
yqjC / 6.3 / 1.7 / 0.03 / hypothetical
cpxR / 6.2 / 1.5 / 0.04 / DNA binding transcription factor
fiu / 5.7 / 1.6 / 0.05 / catecholatesiderophore receptor
sucB / 5.5 / 0.9 / 0.008 / succinyl-CoAsynthetase
elaB / 5.3 / 1.2 / 0.03 / hypothetical
ygbE / 5.3 / 0.6 / 0.003 / hypothetical
pdxY / 5.3 / 1.0 / 0.03 / pyridoxaminekinase
vsr / 5.0 / 1.0 / 0.02 / DNA mismatch endonuclease
potH / 5.0 / 1.1 / 0.03 / putrescine ABC transporter membrane protein
b2442 / 4.8 / 1.1 / 0.04 / predicted phage integrase
yiiD / 4.2 / 0.9 / 0.03 / putative acetyltransferase
glnD / 4.1 / 0.7 / 0.03 / uridylyltransferase
gldA / 3.9 / 0.6 / 0.01 / glycerol dehydrogenase
ybbY / 3.7 / 0.7 / 0.04 / putative purinepermease
ybeL / 3.7 / 0.6 / 0.01 / hypothetical
torR / 3.6 / 0.3 / 0.001 / DNA-binding transcriptional regulator
hcaT / 3.4 / 0.5 / 0.02 / putative 3-phenylpropionic acid transporter
wcaK / 3.3 / 0.6 / 0.03 / putative pyruvyltransferase
cysU / 3.1 / 0.3 / 0.003 / sulfate/thiosulfate transporter
fliM / 2.6 / 0.4 / 0.02 / flagellar motor switch protein
ycgL / 2.5 / 0.4 / 0.04 / hypothetical
icdA / 2.0 / 0.13 / 0.006 / isocitratedehydrogenase
tadA / 1.9 / 0.2 / 0.04 / tRNA-specific adenosine deaminase
yhaM / 1.8 / 0.2 / 0.05 / hypothetical
intG / 1.7 / 0.1 / 0.04 / hypothetical
hemY / 1.5 / 0.1 / 0.02 / putative protoheme IX biogenesis protein
1Values represent the average fold change when comparing expression between the 3 biological replicates.
2p-values were determined by student's t-test compairing individual expression values