Table S2. Genes and Ohnologs Inthe Broadregions of the 15 Established Pathogenic CNV Loci

Table S2. Genes and ohnologs inthe broadregions of the 15 established pathogenic CNV loci.

Ensembl ID / Gene symbol / Full name / CNV locus / CNV locus 2
ENSG00000116128 / BCL9 / B-cell CLL/lymphoma 9 / 1q21.1del
ENSG00000121634 / GJA8 / Gap junction protein, alpha 8 / 1q21.1del
ENSG00000122497 / NBPF14 / Neuroblastoma breakpoint family, member 14 / 1q21.1del
ENSG00000131778 / CHD1L / Chromodomain helicase DNA binding protein 1-like / 1q21.1del
ENSG00000131781 / FMO5 / Flavin containing monooxygenase 5 / 1q21.1del
ENSG00000131791 / PRKAB2 / Protein kinase, AMP-activated, beta 2 non-catalytic subunit / 1q21.1del
ENSG00000143140 / GJA5 / Gap junction protein, alpha 5 / 1q21.1del
ENSG00000143429 / AL663102.4 / Pseudogene similar to part of lymphocyte-specific protein 1 (LSP1) / 1q21.1del
ENSG00000162836 / ACP6 / Acid phosphatase 6, lysophosphatidic / 1q21.1del
ENSG00000185321 / DRD5P2 / Dopamine receptor D5 pseudogene 2 / 1q21.1del
ENSG00000188092 / GPR89B / G protein-coupled receptor 89B / 1q21.1del
ENSG00000198161 / PPIAL4C / Peptidylprolyl isomerase A (cyclophilin A)-like 4C / 1q21.1del
ENSG00000203827 / NBPF16 / Neuroblastoma breakpoint family, member 16 / 1q21.1del
ENSG00000203832 / NBPF20 / Neuroblastoma breakpoint family, member 20 / 1q21.1del
ENSG00000203834 / BX842679.19 / Uncharacterized protein FLJ46360 / 1q21.1del
ENSG00000203835 / FAM108A2 / Family with sequence similarity 108, member A2 / 1q21.1del
ENSG00000203836 / NBPF11 / Neuroblastoma breakpoint family, member 11 / 1q21.1del
ENSG00000215858 / AL592207.9 / Neuroblastoma breakpoint family member 6-like protein / 1q21.1del
ENSG00000215859 / BX537254.7 / PDZ domain containing 1 pseudogene 2 / 1q21.1del
ENSG00000219481 / NBPF1 / Neuroblastoma breakpoint family, member 1 / 1q21.1del
ENSG00000179915 / NRXN1 / Neurexin 1 / 2p16.3del
ENSG00000072274 / TFRC / Transferrin receptor (p90, CD71) / 3q29del
ENSG00000075711 / DLG1 / Discs, large homolog 1 / 3q29del
ENSG00000114503 / NCBP2 / Nuclear cap binding protein subunit 2 / 3q29del
ENSG00000119227 / PIGZ / Phosphatidylinositol glycan anchor biosynthesis, class Z / 3q29del
ENSG00000119231 / SENP5 / SUMO1/sentrin specific peptidase 5 / 3q29del
ENSG00000145107 / TM4SF19 / Transmembrane 4 L six family member 19 / 3q29del
ENSG00000161217 / PCYT1A / Phosphate cytidylyltransferase 1, choline, alpha / 3q29del
ENSG00000161267 / BDH1 / 3-hydroxybutyrate dehydrogenase, type 1 / 3q29del
ENSG00000163958 / ZDHHC19 / Zinc finger, DHHC-type containing 19 / 3q29del
ENSG00000163959 / AC069257.28 / Organic solute transporter subunit alpha / 3q29del
ENSG00000163960 / UBXN7 / UBX domain protein 7 / 3q29del
ENSG00000163961 / RNF168 / Ring finger protein 168, E3 ubiquitin protein ligase / 3q29del
ENSG00000163964 / PIGX / Phosphatidylinositol glycan anchor biosynthesis, class X / 3q29del
ENSG00000163975 / MFI2 / Antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 / 3q29del
ENSG00000174004 / LRRC33 / Leucine rich repeat containing 33 / 3q29del
ENSG00000174007 / CEP19 / Centrosomal protein 19kDa / 3q29del
ENSG00000174013 / FBXO45 / F-box protein 45 / 3q29del
ENSG00000180370 / PAK2 / p21 protein (Cdc42/Rac)-activated kinase 2 / 3q29del
ENSG00000185798 / WDR53 / WD repeat domain 53 / 3q29del
ENSG00000213123 / TCTEX1D2 / Tctex1 domain containing 2 / 3q29del
ENSG00000214097 / C3ORF43 / Chromosome 3 open reading frame 43 / 3q29del
ENSG00000006704 / GTF2IRD1 / GTF2I repeat domain containing 1 / 7q11.23dup
ENSG00000009950 / MLXIPL / MLX interacting protein-like / 7q11.23dup
ENSG00000009954 / BAZ1B / Bromodomain adjacent to zinc finger domain, 1B / 7q11.23dup
ENSG00000049540 / ELN / Elastin / 7q11.23dup
ENSG00000049541 / RFC2 / Replication factor C (activator 1) 2 / 7q11.23dup
ENSG00000071462 / WBSCR22 / Williams Beuren syndrome chromosome region 22 / 7q11.23dup
ENSG00000077800 / FKBP6 / FK506 binding protein 6 / 7q11.23dup
ENSG00000077809 / GTF2I / General transcription factor IIi / 7q11.23dup
ENSG00000086730 / LAT2 / Linker for activation of T cells family, member 2 / 7q11.23dup
ENSG00000106077 / ABHD11 / Abhydrolase domain containing 11 / 7q11.23dup
ENSG00000106089 / STX1A / Syntaxin 1A (brain) / 7q11.23dup
ENSG00000106133 / NSUN5C / NOP2/Sun domain family, member 5 pseudogene 2 / 7q11.23dup
ENSG00000106635 / BCL7B / B-cell CLL/lymphoma 7B / 7q11.23dup
ENSG00000106638 / TBL2 / Transducin (beta)-like 2 / 7q11.23dup
ENSG00000106665 / CYLN2 / CAP-GLY domain containing linker protein 2 / 7q11.23dup
ENSG00000106682 / EIF4H / Eukaryotic translation initiation factor 4H / 7q11.23dup
ENSG00000106683 / LIMK1 / LIM domain kinase 1 / 7q11.23dup
ENSG00000130305 / NSUN5 / NOP2/Sun domain family, member 5 / 7q11.23dup
ENSG00000146755 / TRIM50 / Tripartite motif containing 50 / 7q11.23dup
ENSG00000155428 / TRIM74 / Tripartite motif containing 74 / 7q11.23dup
ENSG00000165171 / WBSCR27 / Williams Beuren syndrome chromosome region 27 / 7q11.23dup
ENSG00000165215 / CLDN3 / Claudin 3 / 7q11.23dup
ENSG00000170409 / AC005488.2-201 / Williams Beuren syndrome chromosome region 19 pseudogene / 7q11.23dup
ENSG00000175877 / WBSCR28 / Williams-Beuren syndrome chromosome region 28 / 7q11.23dup
ENSG00000176410 / DNAJC30 / DnaJ (Hsp40) homolog, subfamily C, member 30 / 7q11.23dup
ENSG00000176428 / VPS37D / Vacuolar protein sorting 37 homolog D / 7q11.23dup
ENSG00000182487 / NCF1B / Neutrophil cytosolic factor 1B pseudogene / 7q11.23dup
ENSG00000187221 / AC005488.2-203 / Known protein coding Ensembl gene / 7q11.23dup
ENSG00000188763 / FZD9 / Frizzled family receptor 9 / 7q11.23dup
ENSG00000189143 / CLDN4 / Claudin 4 / 7q11.23dup
ENSG00000196313 / POM121 / POM121 transmembrane nucleoporin / 7q11.23dup
ENSG00000198305 / AC005488.2-204 / Williams Beuren syndrome chromosome region 19 pseudogene / 7q11.23dup
ENSG00000198632 / AC006995.5-201 / Postmeiotic segregation increased 2-like 1 (PMS2L1) pseudogene / 7q11.23dup
ENSG00000205578 / AC073841.9 / POM121 transmembrane nucleoporin B (pseudogene) / 7q11.23dup
ENSG00000205580 / AC006995.5-202 / Williams Beuren syndrome chromosome region 19 pseudogene / 7q11.23dup
ENSG00000205583 / STAG3L1 / Stromal antigen 3-like 1 / 7q11.23dup
ENSG00000212838 / AC093168.3 / Known protein coding Ensembl gene / 7q11.23dup
ENSG00000174469 / CNTNAP2 / Contactin associated protein-like 2 / 7q36.1del
ENSG00000106018 / VIPR2 / Vasoactive intestinal peptide receptor 2 / 7q36.3dup
ENSG00000117868 / ESYT2 / Extended synaptotagmin-like protein 2 / 7q36.3dup
ENSG00000126870 / WDR60 / WD repeat domain 60 / 7q36.3dup
ENSG00000146918 / NCAPG2 / Non-SMC condensin II complex, subunit G2 / 7q36.3dup
ENSG00000155093 / PTPRN2 / Protein tyrosine phosphatase, receptor type, N polypeptide 2 / 7q36.3dup
ENSG00000186921 / AC093662.4 / Known protein coding Ensembl gene / 7q36.3dup
ENSG00000222012 / AC005481.3 / Putative protein coding Ensembl gene / 7q36.3dup
ENSG00000032514 / ERCC6 / Excision repair cross-complementing rodent repair deficiency, complementation group 6 / 10q11.22-23dup
ENSG00000070748 / CHAT / Choline O-acetyltransferase / 10q11.22-23dup
ENSG00000072444 / ASAH2C / N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2C / 10q11.22-23dup
ENSG00000099290 / FAM21A / Family with sequence similarity 21, member A / 10q11.22-23dup
ENSG00000107618 / RBP3 / Retinol binding protein 3, interstitial / 10q11.22-23dup
ENSG00000107623 / GDF10 / Growth differentiation factor 10 / 10q11.22-23dup
ENSG00000107643 / MAPK8 / Mitogen-activated protein kinase 8 / 10q11.22-23dup
ENSG00000126542 / PTPN20C / Protein tyrosine phosphatase, non-receptor type 20C / 10q11.22-23dup
ENSG00000128802 / GDF2 / Growth differentiation factor 2 / 10q11.22-23dup
ENSG00000128805 / ARHGAP22 / Rho GTPase activating protein 22 / 10q11.22-23dup
ENSG00000128815 / WDFY4 / WDFY family member 4 / 10q11.22-23dup
ENSG00000138293 / NCOA4 / Nuclear receptor coactivator 4 / 10q11.22-23dup
ENSG00000138294 / MSMB / Microseminoprotein, beta / 10q11.22-23dup
ENSG00000138297 / TIMM23 / Translocase of inner mitochondrial membrane 23 homolog / 10q11.22-23dup
ENSG00000150165 / ANXA8L1 / Annexin A8-like 1 / 10q11.22-23dup
ENSG00000152726 / FAM21B / Family with sequence similarity 21, member B / 10q11.22-23dup
ENSG00000165383 / LRRC18 / Leucine rich repeat containing 18 / 10q11.22-23dup
ENSG00000165388 / ZNF488 / Zinc finger protein 488 / 10q11.22-23dup
ENSG00000165390 / ANXA8 / Annexin A8 / 10q11.22-23dup
ENSG00000165606 / DRGX / Dorsal root ganglia homeobox / 10q11.22-23dup
ENSG00000165633 / VSTM4 / V-set and transmembrane domain containing 4 / 10q11.22-23dup
ENSG00000170324 / FRMPD2 / FERM and PDZ domain containing 2 / 10q11.22-23dup
ENSG00000172538 / FAM170B / Family with sequence similarity 170, member B / 10q11.22-23dup
ENSG00000174194 / AGAP8 / ArfGAP with GTPase domain, ankyrin repeat and PH domain 8 / 10q11.22-23dup
ENSG00000174196 / FAM21D / Family with sequence similarity 21, member D / 10q11.22-23dup
ENSG00000177354 / C10ORF71 / Chromosome 10 open reading frame 71 / 10q11.22-23dup
ENSG00000178440 / AL442003.8-201 / Novel processed transcript / 10q11.22-23dup
ENSG00000178645 / C10ORF53 / Chromosome 10 open reading frame 53 / 10q11.22-23dup
ENSG00000179251 / AL391137.11-201 / Uncharacterized protein; cDNA FLJ39396 fis, clone PLACE6008640 / 10q11.22-23dup
ENSG00000179296 / CTGLF12P / Centaurin, gamma-like family, member 12 pseudogene / 10q11.22-23dup
ENSG00000182418 / AL589794.7 / Novel lincRNA / 10q11.22-23dup
ENSG00000183675 / PTPN20B / Protein tyrosine phosphatase, non-receptor type 20B / 10q11.22-23dup
ENSG00000186807 / ANXA8L2 / Annexin A8-like 2 / 10q11.22-23dup
ENSG00000187714 / SLC18A3 / Solute carrier family 18 (vesicular acetylcholine), member 3 / 10q11.22-23dup
ENSG00000188279 / FAM25C / Family with sequence similarity 25, member C / 10q11.22-23dup
ENSG00000188611 / ASAH2 / N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 / 10q11.22-23dup
ENSG00000189014 / FAM35B2 / Family with sequence similarity 35, member B2 (pseudogene) / 10q11.22-23dup
ENSG00000189090 / FAM25B / Family with sequence similarity 25, member B / 10q11.22-23dup
ENSG00000197354 / AL672187.12-202 / Known protein coding Ensembl gene / 10q11.22-23dup
ENSG00000197444 / OGDHL / Oxoglutarate dehydrogenase-like / 10q11.22-23dup
ENSG00000197612 / AL442003.8-202 / Known protein coding Ensembl gene / 10q11.22-23dup
ENSG00000197704 / FRMPD2L1 / FERM and PDZ domain containing 2 pseudogene 1 / 10q11.22-23dup
ENSG00000197910 / FAM25G / Family with sequence similarity 25, member G / 10q11.22-23dup
ENSG00000198035 / AGAP9 / ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 / 10q11.22-23dup
ENSG00000198250 / ANTXRL / Anthrax toxin receptor-like / 10q11.22-23dup
ENSG00000198964 / SGMS1 / Sphingomyelin synthase 1 / 10q11.22-23dup
ENSG00000204149 / AGAP6 / ArfGAP with GTPase domain, ankyrin repeat and PH domain 6 / 10q11.22-23dup
ENSG00000204150 / CTGLF11P / Centaurin, gamma-like family, member 11 pseudogene / 10q11.22-23dup
ENSG00000204152 / TIMM23B / Translocase of inner mitochondrial membrane 23 homolog B / 10q11.22-23dup
ENSG00000204161 / C10ORF128 / Chromosome 10 open reading frame 128 / 10q11.22-23dup
ENSG00000204164 / BMS1P5 / BMS1 pseudogene 5 / 10q11.22-23dup
ENSG00000204169 / AGAP7 / ArfGAP with GTPase domain, ankyrin repeat and PH domain 7 / 10q11.22-23dup
ENSG00000204172 / AGAP10 / ArfGAP with GTPase domain, ankyrin repeat and PH domain 10 / 10q11.22-23dup
ENSG00000204174 / PPYR1 / Pancreatic polypeptide receptor 1 / 10q11.22-23dup
ENSG00000214982 / PARG / Poly (ADP-ribose) glycohydrolase / 10q11.22-23dup
ENSG00000214986 / FAM25E / Family with sequence similarity 25, member D / 10q11.22-23dup
ENSG00000214989 / AC027674.10 / Known protein coding Ensembl gene / 10q11.22-23dup
ENSG00000215020 / AL591684.7-202 / Known protein coding Ensembl gene / 10q11.22-23dup
ENSG00000215033 / AL603965.10-202 / Known protein coding Ensembl gene / 10q11.22-23dup
ENSG00000222049 / PGBD3 / piggyBac transposable element derived 3 / 10q11.22-23dup
ENSG00000068793 / CYFIP1 / Cytoplasmic FMR1 interacting protein 1 / 15q11-q13dup / 15q11.2del
ENSG00000104044 / OCA2 / Oculocutaneous albinism II / 15q11-q13dup
ENSG00000114062 / UBE3A / Ubiquitin protein ligase E3A / 15q11-q13dup
ENSG00000128731 / HERC2 / HECT and RLD domain containing E3 ubiquitin protein ligase 2 / 15q11-q13dup
ENSG00000128739 / SNRPN / Small nuclear ribonucleoprotein polypeptide N / 15q11-q13dup
ENSG00000140157 / NIPA2 / Non imprinted in Prader-Willi/Angelman syndrome 2 / 15q11-q13dup / 15q11.2del
ENSG00000153575 / TUBGCP5 / Tubulin, gamma complex associated protein 5 / 15q11-q13dup / 15q11.2del
ENSG00000153666 / GOLGA9P / Golgin A8 family, member I, pseudogene / 15q11-q13dup
ENSG00000153684 / GOLGA8F / Golgin A8 family, member F / 15q11-q13dup
ENSG00000166206 / GABRB3 / Gamma-aminobutyric acid (GABA) A receptor, beta 3 / 15q11-q13dup
ENSG00000170113 / NIPA1 / Non imprinted in Prader-Willi/Angelman syndrome 1 / 15q11-q13dup / 15q11.2del
ENSG00000174450 / GOLGA6L2 / Golgin A6 family-like 2 / 15q11-q13dup
ENSG00000175676 / GOLGA8E / Golgin A8 family, member E / 15q11-q13dup
ENSG00000176433 / AC100757.2 / Known protein coding Ensembl gene / 15q11-q13dup
ENSG00000179455 / MKRN3 / Makorin ring finger protein 3 / 15q11-q13dup
ENSG00000182256 / GABRG3 / Gamma-aminobutyric acid (GABA) A receptor, gamma 3 / 15q11-q13dup
ENSG00000182636 / NDN / Necdin homolog / 15q11-q13dup
ENSG00000182974 / OR4M2 / Olfactory receptor, family 4, subfamily M, member 2 / 15q11-q13dup
ENSG00000183629 / GOLGA8G / Golgin A8 family, member G / 15q11-q13dup
ENSG00000183706 / OR4N4 / Olfactory receptor, family 4, subfamily N, member 4 / 15q11-q13dup
ENSG00000185182 / GOLGA8DP / Golgin A8 family, member D, pseudogene / 15q11-q13dup
ENSG00000185823 / C15ORF2 / Chromosome 15 open reading frame 2 / 15q11-q13dup
ENSG00000186297 / GABRA5 / Gamma-aminobutyric acid (GABA) A receptor, alpha 5 / 15q11-q13dup
ENSG00000187667 / WHAMMP3 / WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3 / 15q11-q13dup / 15q11.2del
ENSG00000188626 / AC055876.16 / Novel golgin subfamily A member 8-like protein / 15q11-q13dup
ENSG00000189039 / VSIG6 / Immunoglobulin heavy variable 4/OR15-8 / 15q11-q13dup
ENSG00000196645 / AC100756.4-202 / Known protein coding Ensembl gene / 15q11-q13dup
ENSG00000197414 / GOLGA6L1 / Golgin A6 family-like 1 / 15q11-q13dup
ENSG00000206149 / HERC2P2 / Hect domain and RLD 2 pseudogene 9 / 15q11-q13dup
ENSG00000206187 / AC100836.2 / Novel lincRNA / 15q11-q13dup
ENSG00000206190 / ATP10A / ATPase, class V, type 10A / 15q11-q13dup
ENSG00000206193 / AC124312.5 / Known protein coding Ensembl gene / 15q11-q13dup
ENSG00000214265 / SNURF / SNRPN upstream reading frame / 15q11-q13dup
ENSG00000215379 / AC116165.7-204 / Known protein coding Ensembl gene / 15q11-q13dup
ENSG00000034053 / APBA2 / Amyloid beta (A4) precursor protein-binding, family A, member 2 / 15q13.3del
ENSG00000103832 / AC004460.1-201 / Golgin subfamily A member 8 protein pseudogene / 15q13.3del
ENSG00000104059 / FAM189A1 / Family with sequence similarity 189, member A1 / 15q13.3del
ENSG00000104067 / TJP1 / Tight junction protein 1 (zona occludens 1) / 15q13.3del
ENSG00000134160 / TRPM1 / Transient receptor potential cation channel, subfamily M, member 1 / 15q13.3del
ENSG00000166664 / CHRFAM7A / CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion / 15q13.3del
ENSG00000166912 / MTMR10 / Myotubularin related protein 10 / 15q13.3del
ENSG00000166922 / SCG5 / Secretogranin V (7B2 protein) / 15q13.3del
ENSG00000169918 / OTUD7A / OTU domain containing 7A / 15q13.3del
ENSG00000169926 / KLF13 / Kruppel-like factor 13 / 15q13.3del
ENSG00000175344 / CHRNA7 / Cholinergic receptor, nicotinic, alpha 7 / 15q13.3del
ENSG00000178081 / ULK4P3 / Unc-51-like kinase 4 (C. elegans) pseudogene 3 / 15q13.3del
ENSG00000178115 / AC123768.8 / Putative golgin subfamily A member 6-like protein 11 / 15q13.3del
ENSG00000179938 / GOLGA8J / Golgin A8 family, member J / 15q13.3del
ENSG00000185115 / NDNL2 / Necdin-like 2 / 15q13.3del
ENSG00000187951 / ARHGAP11B / Rho GTPase activating protein 11B / 15q13.3del
ENSG00000188532 / AC135983.4-201 / Known protein coding Ensembl gene / 15q13.3del
ENSG00000196102 / AC019322.8 / Novel protein coding Ensembl gene / 15q13.3del
ENSG00000197627 / AC135731.6 / Ubiquitin-conjugating enzyme E2Q (putative) 2 (UBE2Q2) pseudogene / 15q13.3del
ENSG00000198690 / FAN1 / FANCD2/FANCI-associated nuclease 1 / 15q13.3del
ENSG00000198826 / ARHGAP11A / Rho GTPase activating protein 11A / 15q13.3del
ENSG00000203289 / AC004460.1-202 / Known protein coding Ensembl gene / 15q13.3del
ENSG00000206127 / AC135983.4-202 / Putative golgin subfamily A member 6-like protein 11 / 15q13.3del
ENSG00000206128 / AC139426.2-201 / Known protein coding Ensembl gene / 15q13.3del
ENSG00000206138 / AC026150.7 / Known protein coding Ensembl gene / 15q13.3del
ENSG00000206141 / AC120045.19-203 / Known protein coding Ensembl gene / 15q13.3del
ENSG00000215304 / ULK4P1 / Unc-51-like kinase 4 (C. elegans) pseudogene 1 / 15q13.3del
ENSG00000215312 / FAM7A2 / Family with sequence similarity 7, member A2 / 15q13.3del
ENSG00000013364 / MVP / Major vault protein / 16p11.2dup
ENSG00000079616 / KIF22 / Kinesin family member 22 / 16p11.2dup
ENSG00000090238 / YPEL3 / Yippee-like 3 / 16p11.2dup
ENSG00000102879 / CORO1A / Coronin, actin binding protein, 1A / 16p11.2dup
ENSG00000102882 / MAPK3 / Mitogen-activated protein kinase 3 / 16p11.2dup
ENSG00000102886 / GDPD3 / Glycerophosphodiester phosphodiesterase domain containing 3 / 16p11.2dup
ENSG00000103485 / QPRT / Quinolinate phosphoribosyltransferase / 16p11.2dup
ENSG00000103495 / MAZ / MYC-associated zinc finger protein (purine-binding transcription factor) / 16p11.2dup
ENSG00000103502 / CDIPT / CDP-diacylglycerol--inositol 3-phosphatidyltransferase / 16p11.2dup
ENSG00000149922 / TBX6 / T-box 6 / 16p11.2dup
ENSG00000149923 / PPP4C / Protein phosphatase 4, catalytic subunit / 16p11.2dup
ENSG00000149925 / ALDOA / Aldolase A, fructose-bisphosphate / 16p11.2dup
ENSG00000149926 / FAM57B / Family with sequence similarity 57, member B / 16p11.2dup
ENSG00000149927 / DOC2A / Double C2-like domains, alpha / 16p11.2dup
ENSG00000149929 / HIRIP3 / HIRA interacting protein 3 / 16p11.2dup
ENSG00000149930 / TAOK2 / TAO kinase 2 / 16p11.2dup
ENSG00000149932 / TMEM219 / Transmembrane protein 219 / 16p11.2dup
ENSG00000167194 / AC093512.2 / Chromosome 16 open reading frame 92 / 16p11.2dup
ENSG00000167371 / PRRT2 / Proline-rich transmembrane protein 2 / 16p11.2dup
ENSG00000169592 / INO80E / INO80 complex subunit E / 16p11.2dup
ENSG00000169627 / BOLA2B / BolA homolog 2B / 16p11.2dup
ENSG00000174938 / SEZ6L2 / Seizure related 6 homolog (mouse)-like 2 / 16p11.2dup
ENSG00000174939 / ASPHD1 / Aspartate beta-hydroxylase domain containing 1 / 16p11.2dup
ENSG00000174943 / KCTD13 / Potassium channel tetramerisation domain containing 13 / 16p11.2dup
ENSG00000174992 / ZG16 / Zymogen granule protein 16 homolog / 16p11.2dup
ENSG00000185905 / C16ORF54 / Chromosome 16 open reading frame 54 / 16p11.2dup
ENSG00000185928 / C16ORF53 / Chromosome 16 open reading frame 53 / 16p11.2dup
ENSG00000197162 / ZNF688 / Zinc finger protein 688 / 16p11.2dup
ENSG00000197471 / SPN / Sialophorin / 16p11.2dup
ENSG00000205534 / AC009086.6-202 / SMG1 homolog, phosphatidylinositol 3-kinase-related kinase / 16p11.2dup
ENSG00000214725 / AC120114.2 / Novel antisense / 16p11.2dup
ENSG00000217794 / AC009086.6-205 / Known protein coding Ensembl gene / 16p11.2dup
ENSG00000058600 / POLR3E / Polymerase (RNA) III (DNA directed) polypeptide E / 16p12.1del
ENSG00000103319 / EEF2K / Eukaryotic elongation factor-2 kinase / 16p12.1del
ENSG00000140740 / UQCRC2 / Ubiquinol-cytochrome c reductase core protein II / 16p12.1del
ENSG00000140743 / CDR2 / Cerebellar degeneration-related protein 2 / 16p12.1del
ENSG00000155714 / PDZD9 / PDZ domain containing 9 / 16p12.1del
ENSG00000175267 / VWA3A / Von Willebrand factor A domain containing 3A / 16p12.1del
ENSG00000179038 / AC092375.4-201 / Known protein coding Ensembl gene / 16p12.1del
ENSG00000183921 / SDR42E2 / Short chain dehydrogenase/reductase family 42E, member 2 / 16p12.1del
ENSG00000185710 / AC092375.4-202 / SMG1 homolog, phosphatidylinositol 3-kinase-related kinase / 16p12.1del
ENSG00000185716 / C16orf52 / Chromosome 16 open reading frame 52 / 16p12.1del
ENSG00000185864 / AC092375.4-203 / Putative NPIP-like protein KIAA0220-like / 16p12.1del
ENSG00000205536 / AC092375.4-204 / Known protein coding Ensembl gene / 16p12.1del
ENSG00000205685 / AC092375.4-205 / Known protein coding Ensembl gene / 16p12.1del
ENSG00000072864 / NDE1 / NudE nuclear distribution E homolog 1 / 16p13.11dup/del
ENSG00000085721 / RRN3 / RRN3 RNA polymerase I transcription factor homolog / 16p13.11dup/del
ENSG00000091262 / ABCC6 / ATP-binding cassette, sub-family C (CFTR/MRP), member 6 / 16p13.11dup/del
ENSG00000103222 / ABCC1 / ATP-binding cassette, sub-family C (CFTR/MRP), member 1 / 16p13.11dup/del
ENSG00000103226 / NOMO3 / NODAL modulator 3 / 16p13.11dup/del
ENSG00000103489 / XYLT1 / Xylosyltransferase I / 16p13.11dup/del
ENSG00000103512 / NOMO1 / NODAL modulator 1 / 16p13.11dup/del
ENSG00000133392 / MYH11 / Myosin, heavy chain 11, smooth muscle / 16p13.11dup/del
ENSG00000133393 / FOPNL / FGFR1OP N-terminal like / 16p13.11dup/del
ENSG00000156968 / MPV17L / MPV17 mitochondrial membrane protein-like / 16p13.11dup/del
ENSG00000157045 / NTAN1 / N-terminal asparagine amidase / 16p13.11dup/del
ENSG00000166780 / C16ORF45 / Chromosome 16 open reading frame 45 / 16p13.11dup/del
ENSG00000166783 / KIAA0430 / Known protein coding Ensembl gene / 16p13.11dup/del
ENSG00000179889 / PDXDC1 / Pyridoxal-dependent decarboxylase domain containing 1 / 16p13.11dup/del
ENSG00000183426 / NPIP / Nuclear pore complex interacting protein / 16p13.11dup/del
ENSG00000183458 / AC136619.3-201 / Polycystic kidney disease 1 (autosomal dominant) (PKD1) pseudogene / 16p13.11dup/del
ENSG00000183793 / AC138932.4 / Novel member of the nuclear pore complex interacting protein-like NPIPL gene family / 16p13.11dup/del
ENSG00000183889 / AC126755.3-201 / NPIP-like protein 1 / 16p13.11dup/del
ENSG00000185164 / NOMO2 / NODAL modulator 2 / 16p13.11dup/del
ENSG00000188599 / AC139256.5 / Nuclear pore complex interacting protein pseudogene 1 / 16p13.11dup/del
ENSG00000196908 / AC137803.2 / Known protein coding Ensembl gene / 16p13.11dup/del
ENSG00000205746 / AC126755.3-202 / Polycystic kidney disease 1 (autosomal dominant) (PKD1) pseudogene / 16p13.11dup/del
ENSG00000205748 / AC109446.2 / Known protein coding Ensembl gene / 16p13.11dup/del
ENSG00000214940 / AC136619.3-202 / Novel member of the nuclear pore complex interacting protein-like NPIPL gene family / 16p13.11dup/del
ENSG00000214967 / AC138969.2 / Nuclear pore complex-interacting protein-like 1 / 16p13.11dup/del
ENSG00000215003 / AC130651.2 / Ribosomal protein L15 pseudogene 20 / 16p13.11dup/del
ENSG00000005955 / GGNBP2 / Gametogenetin binding protein 2 / 17q12del
ENSG00000006114 / SYNRG / Synergin, gamma / 17q12del
ENSG00000108264 / TADA2L / Transcriptional adaptor 2A / 17q12del
ENSG00000108270 / AATF / Apoptosis antagonizing transcription factor / 17q12del
ENSG00000108272 / DHRS11 / Dehydrogenase/reductase (SDR family) member 11 / 17q12del
ENSG00000108278 / ZNHIT3 / Zinc finger, HIT-type containing 3 / 17q12del
ENSG00000108753 / HNF1B / HNF1 homeobox B / 17q12del
ENSG00000129277 / CCL4 / Chemokine (C-C motif) ligand 4 / 17q12del
ENSG00000129282 / MRM1 / Mitochondrial rRNA methyltransferase 1 homolog / 17q12del
ENSG00000132130 / LHX1 / LIM homeobox / 17q12del
ENSG00000132142 / ACACA / Acetyl-CoA carboxylase alpha / 17q12del
ENSG00000141140 / MYO19 / Myosin XIX / 17q12del
ENSG00000141141 / DDX52 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 / 17q12del
ENSG00000161326 / DUSP14 / Dual specificity phosphatase 14 / 17q12del
ENSG00000161583 / TBC1D3G / TBC1 domain family, member 3G / 17q12del
ENSG00000167230 / C17ORF78 / Chromosome 17 open reading frame 78 / 17q12del
ENSG00000184886 / PIGW / Phosphatidylinositol glycan anchor biosynthesis, class W / 17q12del
ENSG00000188849 / AC126327.6 / TBC1 domain family member 3-like protein LOC729837 / 17q12del
ENSG00000189309 / TBC1D3F / TBC1 domain family, member 3F / 17q12del
ENSG00000197262 / CCL4L2 / Chemokine (C-C motif) ligand 4-like 2 / 17q12del
ENSG00000205017 / CCL3L1 / Chemokine (C-C motif) ligand 3-like 1 / 17q12del
ENSG00000205019 / TBC1D3C / TBC1 domain family, member 3C / 17q12del
ENSG00000205020 / CCL4L1 / Chemokine (C-C motif) ligand 4-like 1 / 17q12del
ENSG00000205021 / CCL3L3 / Chemokine (C-C motif) ligand 3-like 1 / 17q12del
ENSG00000040608 / RTN4R / Reticulon 4 receptor / 22q11del#
ENSG00000063515 / GSC2 / Goosecoid homeobox 2 / 22q11del#
ENSG00000070010 / UFD1L / Ubiquitin fusion degradation 1 like / 22q11del#
ENSG00000070371 / CLTCL1 / Clathrin, heavy chain-like 1 / 22q11del#
ENSG00000070413 / DGCR2 / DiGeorge syndrome critical region gene 2 / 22q11del#
ENSG00000093009 / CDC45L / Cell division cycle 45 homolog / 22q11del#
ENSG00000093010 / COMT / Catechol-O-methyltransferase / 22q11del#
ENSG00000099889 / ARVCF / Armadillo repeat gene deleted in velocardiofacial syndrome / 22q11del#
ENSG00000099899 / TRMT2A / TRM2 tRNA methyltransferase 2 homolog A / 22q11del#
ENSG00000099901 / RANBP1 / RAN binding protein 1 / 22q11del#
ENSG00000099904 / ZDHHC8 / Zinc finger, DHHC-type containing 8 / 22q11del#
ENSG00000099910 / KLHL22 / Kelch-like 22 / 22q11del#
ENSG00000099917 / MED15 / Mediator complex subunit 15 / 22q11del#
ENSG00000099937 / SERPIND1 / Serpin peptidase inhibitor, clade D (heparin cofactor), member 1 / 22q11del#
ENSG00000099940 / SNAP29 / Synaptosomal-associated protein, 29kDa / 22q11del#
ENSG00000099942 / CRKL / V-crk sarcoma virus CT10 oncogene homolog (avian)-like / 22q11del#
ENSG00000099949 / LZTR1 / Leucine-zipper-like transcription regulator 1 / 22q11del#
ENSG00000099957 / P2RX6 / Purinergic receptor P2X, ligand-gated ion channel, 6 / 22q11del#
ENSG00000099960 / SLC7A4 / Solute carrier family 7 (orphan transporter), member 4 / 22q11del#
ENSG00000100033 / PRODH / Proline dehydrogenase (oxidase) 1 / 22q11del#
ENSG00000100056 / DGCR14 / DiGeorge syndrome critical region gene 14 / 22q11del#
ENSG00000100075 / SLC25A1 / Solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 / 22q11del#
ENSG00000100084 / HIRA / HIR histone cell cycle regulation defective homolog A / 22q11del#
ENSG00000128185 / DGCR6L / DiGeorge syndrome critical region gene 6-like / 22q11del#
ENSG00000128191 / DGCR8 / DiGeorge syndrome critical region gene 8 / 22q11del#
ENSG00000133475 / GGT2 / Gamma-glutamyltransferase 2 / 22q11del#
ENSG00000133511 / PI4KA / Phosphatidylinositol 4-kinase alpha (PI4-kinase alpha)(PtdIns-4-kinase alpha)(PI4K-alpha) / 22q11del#
ENSG00000161132 / AC007663.29 / Proline dehydrogenase (oxidase) 1 (PRODH) pseudogene / 22q11del#
ENSG00000161133 / USP41 / Ubiquitin specific peptidase 41 / 22q11del#
ENSG00000161149 / AC002472.8-201 / Pseudogene similar to part of tubulin, alpha 3c (TUBA3C) / 22q11del#
ENSG00000169662 / BCRP6 / Breakpoint cluster region pseudogene 6 / 22q11del#
ENSG00000169668 / BCRP2 / Breakpoint cluster region pseudogene 2 / 22q11del#
ENSG00000169892 / AP000552.1-202 / Known protein coding Ensembl gene / 22q11del#
ENSG00000182490 / AC004471.2 / Known protein coding Ensembl gene / 22q11del#
ENSG00000183038 / GGTLC3 / Gamma-glutamyltransferase light chain 3 / 22q11del#
ENSG00000183597 / C22ORF25 / Chromosome 22 open reading frame 25 / 22q11del#
ENSG00000183773 / AIFM3 / Apoptosis-inducing factor, mitochondrion-associated, 3 / 22q11del#
ENSG00000184058 / TBX1 / T-box 1 / 22q11del#
ENSG00000184113 / CLDN5 / Claudin 5 / 22q11del#
ENSG00000184436 / THAP7 / THAP domain containing 7 / 22q11del#
ENSG00000184470 / TXNRD2 / Thioredoxin reductase 2 / 22q11del#
ENSG00000184702 / 5.SEP / Septin 5 / 22q11del#
ENSG00000185065 / C22ORF39 / Chromosome 22 open reading frame 39 / 22q11del#
ENSG00000185214 / KLHL22 / Kelch-like 22 / 22q11del#
ENSG00000185252 / ZNF74 / Zinc finger protein 74 / 22q11del#
ENSG00000185608 / MRPL40 / Mitochondrial ribosomal protein L40 / 22q11del#
ENSG00000185838 / GNB1L / Guanine nucleotide binding protein (G protein), beta polypeptide 1-like / 22q11del#
ENSG00000187905 / AC002472.8-202 / Leucine-rich repeat-containing protein LOC400891 / 22q11del#
ENSG00000187979 / AC011718.2 / Novel antisense / 22q11del#
ENSG00000188280 / AC007731.16-201 / Novel antisense / 22q11del#
ENSG00000188424 / AC023490.5 / Putative antisense / 22q11del#
ENSG00000189258 / AC007050.13 / Known protein coding Ensembl gene / 22q11del#
ENSG00000196622 / RIMBP3 / RIMS binding protein 3 / 22q11del#
ENSG00000196934 / RIMBP3B / RIMS binding protein 3B / 22q11del#
ENSG00000197210 / AP000550.1-202 / Novel processed transcript / 22q11del#
ENSG00000203618 / GP1BB / Glycoprotein Ib (platelet), beta polypeptide / 22q11del#
ENSG00000206142 / AP000552.1-204 / Long intergenic non-protein coding RNA 281 / 22q11del#
ENSG00000206145 / P2RX6P / Purinergic receptor P2X, ligand-gated ion channel, 6 pseudogene / 22q11del#
ENSG00000206152 / AC002470.17 / Known protein coding Ensembl gene / 22q11del#
ENSG00000206176 / TMEM191C / Transmembrane protein 191C / 22q11del#
ENSG00000206203 / TSSK2 / Testis-specific serine kinase 2 / 22q11del#
ENSG00000215012 / C22ORF29 / Chromosome 22 open reading frame 29 / 22q11del#
ENSG00000215498 / AC007731.16-204 / Novel processed transcript / 22q11del#
ENSG00000215513 / PI4KAP1 / Phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 / 22q11del#
ENSG00000217261 / POM121L4P / POM121 transmembrane nucleoporin-like 4 pseudogene / 22q11del#

Genes in bold are ohnologs.