Session 06:Genomics and Gene Discovery Platforms

References of the oral and posters presentations of theFirst World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016.

Session 06:Genomics and Gene Discovery Platforms

Chair1Wilhelm Gruissem

Chair2Wenquan Wang

Session 06: Oral Presentations

Wenzhi Zhou, Shutao He, MaliwanNaconsie, Samuel C. Zeeman, Wilhelm Gruissem and Peng Zhang* (2016).Storage Shoot Deficiency (SRD) Gene Regulates Starch Metabolism And Storage Root Development In Cassava (ManihotesculentaCrantz). Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-01 # 2161 300

Luiz JCB Carvalho*, James V Anderson, Wang Wenquan, Songbi Chen, Claudia R B de Souza, Eduardo A Vieira and Barbara A Schaal (2016). A genomic assisted breeding program for cassava to improve nutritional and starch quality in storage root. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-02 # 4472 2052

WanatsananSiriwat*, OrataiRongsirikul, SaowalakKalapanulak, PorntipChiewchankaset, SupatchareeNetrphan, MalineeSuksangpanomrung, AsawinMeechai, SupaponCheevadhanarak and TreenutSaithong (2016). Starch Biosynthesis Metabolic Pathway Of Cassava A Quest For Conservation And Uniqueness. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-03 # 4766 616

Ming Peng, Wenquan Wang*, Shengkui Zhang, Ping’an Ma, Haiyan Wang, Cheng Lu, Xin Chen, Zhiqiang Xia, MeilingZou and Xincheng Zhou (2016). Genomics approaches to unlock the high yield potential of cassava, a tropical model plant. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-04 # 4806 2073

Emily J McCallum*, Ludvik K Wachowski, Kim Schlegel, Serena Rigotti, Sandra Mansveld, Michiel TJ de Both and Wilhelm Gruissem (2016). A high-throughput chemical mutagenesis platform for production of herbicide-tolerant cassava.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-05 # 2182 3128

RatanaThanasomboon, SaowalakKalapanulak, SupatchareeNetrphan and TreenutSaithong (2016). Genome-Wide Prediction Of Protein-Protein Interaction Network In Cassava Based On Interolog Method.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-06 # 4683 524

ImaMulyamaZainuddin, EnnySudarmonowati, Wilhelm Gruissem and HervéVanderschuren (2016). Comparative transcriptome analysis of post-harvest physiological deterioration (PPD) in two Indonesian cassava landraces contrasting for PPD tolerance.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-07 # 4785 3191

Williams Esuma*, LiezelHerselman, MarykeLabuschagne, RamuPunna, Edward Buckler and Robert Kawuki (2016).Genome-Wide Association Mapping Of Carotenoid Content In Cassava (ManihotesculentaCrantz). Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-08 # 1052 435

MelakuGedil, Ismail Rabbi, Andreas Gisel and LiviaStavolone (2016). Understanding the genetic basis of cassava mosaic disease resistance through in-silico mining and experimental gene discovery. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-09 # 1090 3093

Xin Chen, Jing Xia, Zhiqiang Xia, Hefang Zhang, ChangyingZeng, Cheng Lu, Weixiong Zhang and Wenquan Wang* (2016). Potential functions of microRNAs in starch metabolism and development revealed by miRNAtranscriptome profiling of cassava cultivars and their wild progenitor. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-10 # 4589 2046

Wenquan Wang*, BinxiaoFeng, Jingfa Xiao, Zhiqiang Xia, Xincheng Zhou, Pinghua Li, WeixiongZhang,Ying Wang, Birger Lindberg Møller, Peng Zhang, Ming-Cheng Luo, Gong Xiao, Jingxing Liu, Jun Yang, Songbi Chen, Pablo D. Rabinowicz, Xin Chen, Hong-Bin Zhang, Henan Ceballos, Qunfeng Lou, MeilingZou, Luiz J.C.B. Carvalho, ChangyingZeng, Jing Xia, Shixiang Sun, Yuhua Fu, Haiyan Wang, Cheng Lu, MengbinRuan, Shuigeng Zhou, Zhicheng Wu, Hui Liu, Rubini Maya Kannangara, Kirsten Jørgensen, Rebecca Louise Neale, Maya Bonde, Nanna Heinz, Wenli Zhu, Shujuan Wang, Yang Zhang, Kun Pan, Mingfu Wen, Ping-An Ma, Zhengxu Li, Meizhen Hu, Wenbin Liao, Wenbin Hu, Shengkui Zhang, Jinli Pei, AnpingGuo, JianchunGuo, Jiaming Zhang, Zhengwen Zhang, Jianqiu Ye, WenjunOu, Yaqin Ma, Xinyue Liu, Luke J. Tallon, Kevin Galens, Sandra Ott, Jie Huang, JingjingXue, Feifei An, Qingqun Yao, Xiaojing Lu, Martin Fregene, L Augusto Becerra Lopez-Lavalle, Jiajie Wu, Frank M. You, Meili Chen, Songnian Hu, Guojiang Wu, SilinZhong, Peng Ling, Yeyuan Chen, Qinghuang Wang, Guodao Liu, Bin Liu, Kaimian Li and Ming Peng (2016). Cassava genome from a wild ancestor to cultivated varieties. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-11 # 1131 2035

Jun Yang*, M-HosseinMoeinzadeh, HeinerKuhl, Johannes Helmuth, Peng Xiao, Guiling Liu, JianliZheng, Zhe Sun, Weijuan Fan, Gaifang Deng, Hongxia Wang, Fenhong Hu, Alisdair R Fernie, Bernd Timmermann, Peng Zhang and Martin Vingron (2016). The haplotype-resolved genome sequence of hexaploid Ipomoea batatas reveals the evolutionary history of this polyploid species. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-12 # 6936 4242

Joel-E. Kuon*, Wilhelm Gruissem and HervéVanderschuren (2016).Exploitation of genetic resources.The search for the dominant gene conferring resistance to cassava mosaic disease.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-13 # 4685 4228

Claudia Samantha Perea*, Luis Augusto Becerra-Lavalle, Jorge Duitama, Tatiana Ovalle, Joe Tohme, Dominique Darfour and Clair Hershey (2016). A Cassava Genome-Wide Survey Of Sequence Variations Reveals Eco-Geographic Signature Of The Crop’s Evolution, Distribution And Modern Diversity.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-14 # 3368 406

Session 06: Posters Presentations

Abaca, A., Fathoni, A., Shi, L. and Beeching, J.R. (2016).Identification Of Phenylalanine Ammonia Lyase (PAL) Gene Family And Their Expression In Cassava (Manihotesculenta). Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-01 # 1062 96

OpasBoonseng, AthipongBoonchanawiwat and KanokpornTriwitayakorn* (2016).QTL Underlying Plant And First Branch Height In Cassava (ManihotesculentaCrantz). Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-02 # 1086 112

Luiz JCB Carvalho*, Thaís de MouraCipriano, Cínthia Caetano Bonatto, Luciano Paulino da Silva, Francisco Jose Lima Aragão, James V Anderson, Wang Wenquan, Songbi Chen, Claudia R B de Souza, Eduardo A Vieira and Barbara A Schaal (2016). Branching enzyme isoform I-null gene mutation in cassava (ManihotesculentaCrantz) alters amylopectin branching pattern and zeta potential of altered starch..Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-03 # 4472 2055

SomkidBumee, Bandit Khampoosa, TreenutSaithong and SaowalakKalapanulak* (2016).Integrative Approach For Predicting Transcription Factors Controlling Starch Genes In Cassava.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-05 # 4792 587

Otti*, G., Bouvaine S. and Maruthi, M.N. (2016).Assessment of allele-specific expression in Cassava brown streak virus-infected cassava germplasm.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-06 # 1115 2005

Jian-Chun Guo, Yuan Yao, Meng-Ting Geng ,Rui-Mei Li, Jiao Liu and Shao-Ping Fu (2016). The Researches On The Invertase Family Genes And The Role On Starch Accumulation In Cassava (ManihotesculentaCrantz). Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-07 # 2164 556

Meizhen Hu, Haiyan Wang, Xincheng Zhou, Cankui Zhang, Ming Pengand Wenquan Wang (2016). SUT1a mediated sucrose apoplastic phloem loading in leave of cassava (ManihotesculentaCrantz). Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-08 # 1131 2077

Roberto Lozano*, DuniaPino del Carpio, DenizAkdemir and Jean-Luc Jannink (2016).Using SNP Functional Annotation Into Genomic Selection (GS) For Biotic Stress Resistance In Cassava. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-10 # 3264 173

Jiao Liu, BinbinGeng, YuqiangGuo, Shaoping Fu, RuijunDuan, Ruimei Li, Yuan Yao and JianchunGuo* (2016). Isolation And Analysis Of Six Promoters From Cassava (ManihotesculentaCrantz) Cell-Wall Invertase Gene Family. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-11 # 2147 577

InostersNzuki*, Zander Myburg, Manpreet S Katari and Morag Ferguson (2016).QTL Mapping For Cassava Brown-Streak Disease And The Introgression Regions In Kiroba Derived From Manihotglaziovii. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-12 # 4646 1637

John Odipio*, Titus Alicai, Dmitri Nusinow, Rebecca Bart, Ivan Ingelbrecht and Nigel Taylor (2016).Identification And Analysis Of Putative Flowering Related Genes In Cassava.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-13 # 1022 89

Okereke*, N.R., Uba, E., Ogbonna, A., Kahya, S.S. and Egesi, C.N (2016).Toward designing and developing high density cassava microarray for gene expression profiling. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-14 # 3315 2066

Tatiana Ovalle, Claudia Perea, Mónica Pizarro, Nelson Morante, HernánCeballos, Dominique Dufour, Anderson Meike and Augusto Becerra López-Lavalle. (2016). Elucidating High Betacarotene Accumulation In Cassava Based On Next Generation Sequencing.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-15 # 3339 396

Kun Pan*, Haiyan Wang, Meizhen Hu, Xincheng Zhou, Zhiqiang Xia, Xin Chen, Cheng Lu, PeixianNie and Wenquan Wang (2016). A symplasmiccarbohydrate unloading model is correlated with efficient starch accumulation in cassava (ManihotesculentaCrantz). Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-17 # 1131 2036

PunchapatSojikul*, TreenutSaithong, SaowalakKalapanulak, NuttapatPisuttinusart, SiripanLimsirichaikul, Maho Tanaka, Yoshinori Utsumi, Tetsuya Sakurai, Motoaki Seki and JarunyaNarangajavana (2016). Genome-Wide Analysis Unraveling The Puzzle Of Phytohormones Acting In Concert During Storage Root Initiation Of Cassava.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-19 # 3257 500

Yuan Yao, Chong Sun*, Xiao-Hui Wu, Meng-Ting Geng, Yun-lin Wang, Jiao liu, Rui-Mei Li, Shao-Ping Fu and Jian-Chun Guo (2016). Cloning And Expression Analysis Of Fructokinase Genes From Cassava (ManihotesculentaCrantz). Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-21 # 4817 628

Chen Liu, Xin Chen, Kaixin Fang, Ping’an Ma, Cheng Lu and Wenquan Wang* (2016).Finding and Validation of Candidate Transcription Factors Involved in Regulation of MeSuSy1 in Cassava (ManihotesculentaCrantz).Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-24 # 4589 2045

Meizhen Hu*, Haiyan Wang, Xincheng Zhou, Cankui Zhang, Ming Peng and Wenquan Wang (2016).Cassava SUT1a functions in apoplastic phloem loading. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-25 # 4589 2067

Xincheng Zhou*, Haiyan Wang, Meizhen Hu, Danping Wang and Wenquan Wang (2016).Characterization of a high copy hAT family of MITE in the cassava genome.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-26 # 4589 2068

Zhiqing Xia*, Xin Chen, MeilingZou, ShujuanWang, Yang Zhang, Kun Pan, Xincheng Zhou, Cheng Lu and Wenquan Wang (2016). Transcriptomics unlocked evolutional differentiation of photosynthesis and starch metabolism from wild progenitor to cultivars in cassava (ManihotesculentaCrantz). Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-27 # 1131 2037

Yuan Yao*, Xiao-Hui Wu, Meng-Ting Geng, Chong Sun, Yun-lin Wang, Jiao liu, Rui-Mei Li, Shao-Ping Fu and Jian-Chun Guo (2016). Genome-Wide Identification, Expression And Enzymatic Activity Analysis Of Hexokinase Gene Family From Cassava. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-28 # 2145 629

Xia*, Z., Zou, M., Zhang, S., Feng, B. and Wang, W. (2016).AFSM sequencing approach a simple and rapid method for genome-wide SNP and methylation site discovery and genetic mapping. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-29 # 2137 2025

LijuanLuo, Qin Liu, XiaoshanGeng and Junzheng Wu (2016). Functional Characterization of the Monosaccharide Transporter Gene Family in Cassava.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-30 # 5854 4267

Session 06: Oral Presentations Accepted but not Presented

Patil*, B., Bagewadi, B., Yadav, J. and Fauquet, C. (2016).Mapping and Identification of Geminivirus Genome Sequences for Efficient RNAi Expression. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. S06-15 # 4598 2014

Session 06: Poster Presentations Accepted but not Presented

RaweewanCheukittisak, OpasBoonseng and SuparatLeethanatudom* (2016).Pre-Screening Of Resistance To Anthracnose Disease In Cassava (ManihotesculentaCrantz) By In Vitro Detached Leaf Assay. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-04 # 1106 113

Martina Kyallo, Peter Sseruwagi, Robert A. Skilton, Mildred Ochwo-Ssemakula, Peter Wasswa and Joseph Ndunguru (2016). A Novel Indigenous Old World Bipartite Begomovirus Of Non-Recombinant Nature Related To East African Cassava Mosaic Viruses Infects A Shrub (Deinbolliaborbonica) In Kenya.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-09 # 1113 470

NiponPachanawan, OpasBoonseng and SukhumanWhankaew* (2016).Reference Gene And Application In Analysis Of Linamarase And Α-HydroxynitrilLyase Expression At Different Growth Stages In Cassava (ManihotesculentaCrantz).Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-16 # 3282 182

Basavaprabhu L. Patil and Claude M. Fauquet (2016). Effect of Light & Temperature on Virus Infections, RNAi and their implications on VIGS.Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-18 # 4598 3148

BoonyaphaSrihata, OpasBoonseng and SupajitSraphet* (2016).Assessment Genetic Diversity Of Cassava (ManihotesculentaCrantz) Using SSR Markers. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-20 # 1126 118

Luyan Zhang and Jiankang Wang (2016). Linkage Analysis, QTL Mapping And Integrated Software Package Of Clonal F1. Ed. C.M. Fauquet, Electronic Proceedings of the First World Congress on Root and Tuber Crops, Nanning, Guangxi, China, January 18-22, 2016. SP06-23 # 3331 220