Table S1. Genes up-regulated in the NMB1966 mutantcompared to WT.

Gene # / Name / Fold change / P-value / Functional group
NMB0214 / prlC / 1.9 / 6.96E-04 / Amino acid transport and metabolism
NMB0629 / hisA / 1.5 / 2.85E-02 / Amino acid transport and metabolism
NMB0630 / hisH / 1.5 / 1.31E-02 / Amino acid transport and metabolism
NMB0696 / 1.6 / 2.03E-04 / Amino acid transport and metabolism
NMB0699 / trpB / 1.6 / 8.83E-03 / Amino acid transport and metabolism
NMB0943 / metF / 2.1 / 2.42E-02 / Amino acid transport and metabolism
NMB0944 / metE / 1.9 / 7.33E-03 / Amino acid transport and metabolism
NMB0967 / trpD / 1.4 / 2.22E-02 / Amino acid transport and metabolism
NMB1031 / leuB / 1.3 / 2.89E-02 / Amino acid transport and metabolism
NMB1073 / 1.6 / 1.64E-02 / Amino acid transport and metabolism
NMB1075 / 2.2 / 4.32E-04 / Amino acid transport and metabolism
NMB1379 / 4.3 / 1.04E-04 / Amino acid transport and metabolism
NMB1416 / pepN / 1.8 / 1.65E-02 / Amino acid transport and metabolism
NMB1428 / 1.8 / 3.67E-02 / Amino acid transport and metabolism
NMB1476 / 3.0 / 3.02E-03 / Amino acid transport and metabolism
NMB1579 / hisG / 1.5 / 1.73E-03 / Amino acid transport and metabolism
NMB1581 / hisD / 2.0 / 1.75E-02 / Amino acid transport and metabolism
NMB1582 / hisC / 2.0 / 1.17E-02 / Amino acid transport and metabolism
NMB1609 / metZ / 2.5 / 2.13E-04 / Amino acid transport and metabolism
NMB1710 / gdhA / 2.2 / 1.73E-03 / Amino acid transport and metabolism
NMB0207 / gapA / 1.8 / 4.90E-03 / Carbohydrate transport and metabolism
NMB1060 / fbp / 2.3 / 1.80E-03 / Carbohydrate transport and metabolism
NMB1887 / tpi / 2.1 / 2.00E-04 / Carbohydrate transport and metabolism
NMB2090 / lpcA / 1.9 / 1.33E-03 / Carbohydrate transport and metabolism
NMB1333 / 2.4 / 3.24E-02 / Cell cycle control, mitosis and meiosis
NMB1365 / 1.7 / 2.91E-02 / Cell cycle control, mitosis and meiosis
NMB0182 / omp85 / 1.5 / 3.86E-02 / Cell wall/membrane biosynthesis
NMB0928 / 2.0 / 6.48E-05 / Cell wall/membrane biosynthesis
NMB1283 / kdsA / 1.5 / 3.78E-02 / Cell wall/membrane biosynthesis
NMB2039 / porB / 1.2 / 2.07E-02 / Cell wall/membrane biosynthesis
NMB0323 / 1.4 / 4.64E-03 / Coenzyme transport and metabolism
NMB0870 / panB / 1.7 / 2.02E-02 / Coenzyme transport and metabolism
NMB1559 / gshB / 1.5 / 3.08E-02 / Coenzyme transport and metabolism
NMB1577 / ilvI / 3.0 / 1.37E-02 / Coenzyme transport and metabolism
NMB0401 / putA / 2.2 / 1.13E-03 / Energy production and conversion
NMB0955 / sucA / 2.0 / 1.36E-03 / Energy production and conversion
NMB0957 / lpdA3 / 3.8 / 1.61E-04 / Energy production and conversion
NMB1380 / 5.5 / 4.94E-04 / Energy production and conversion
NMB1450 / 2.3 / 3.14E-02 / Energy production and conversion
NMB0711 / 2.2 / 1.20E-02 / Function unknown
NMB1381 / 5.5 / 4.94E-03 / Function unknown
NMB1423 / 1.5 / 4.63E-03 / Function unknown
NMB1437 / 1.9 / 1.41E-02 / Function unknown
NMB1590 / 1.8 / 3.34E-02 / Function unknown
NMB0830 / 1.4 / 4.68E-02 / General function prediction only
NMB0924 / 1.6 / 7.54E-04 / General function prediction only
NMB1024 / 2.9 / 4.42E-04 / General function prediction only
NMB1263 / 1.7 / 1.61E-03 / General function prediction only
NMB1306 / 1.7 / 1.13E-04 / General function prediction only
NMB1619 / 1.5 / 3.14E-02 / General function prediction only
NMB1815 / 1.5 / 4.81E-02 / General function prediction only
NMB2091 / 2.6 / 1.00E-05 / General function prediction only
NMB0294 / 3.6 / 4.76E-03 / Not in COG
NMB0298 / 1.5 / 4.50E-02 / Not in COG
NMB0017 / lpxC / 13.5 / 4.22E-02 / Not in COG
NMB0105 / 1.4 / 1.32E-02 / Not in COG
NMB0640 / 1.3 / 2.77E-02 / Not in COG
NMB0647 / 1.5 / 2.61E-03 / Not in COG
NMB0761 / 1.6 / 1.40E-02 / Not in COG
NMB0893 / dut / 1.8 / 1.04E-02 / Not in COG
NMB0905 / 1.4 / 9.38E-03 / Not in COG
NMB0958 / 1.6 / 2.58E-03 / Not in COG
NMB1030 / 2.4 / 4.34E-04 / Not in COG
NMB1296 / 2.4 / 3.95E-04 / Not in COG
NMB1340 / 2.7 / 2.51E-03 / Not in COG
NMB1343 / 2.2 / 8.00E-03 / Not in COG
NMB1517 / 1.6 / 1.82E-02 / Not in COG
NMB1875 / 2.0 / 2.24E-03 / Not in COG
NMB2059 / 1.4 / 1.87E-02 / Not in COG
NMB2095 / 2.0 / 1.35E-02 / Not in COG
NMB0639 / 1.3 / 1.59E-02 / Nucleotide transport and metabolism
NMB1874 / pyrE / 1.5 / 9.50E-03 / Nucleotide transport and metabolism
NMB0554 / dnaK / 1.4 / 2.31E-02 / Post-translational modification, protein turnover, chaperones
NMB0946 / 1.5 / 4.97E-02 / Post-translational modification, protein turnover, chaperones
NMB1383 / hscB / 2.8 / 2.01E-06 / Post-translational modification, protein turnover, chaperones
NMB1472 / clpB / 3.8 / 3.88E-04 / Post-translational modification, protein turnover, chaperones
NMB1564 / 1.2 / 4.77E-02 / Post-translational modification, protein turnover, chaperones
NMB1567 / 2.6 / 6.29E-03 / Post-translational modification, protein turnover, chaperones
NMB1734 / grxB / 1.7 / 3.71E-03 / Post-translational modification, protein turnover, chaperones
NMB0698 / NMB0698 / 2.3 / 1.48E-02 / Replication recombination and repair
NMB1064 / 1.5 / 6.81E-03 / Replication recombination and repair
NMB1076 / 1.7 / 2.98E-02 / Replication recombination and repair
NMB1295 / fpg / 1.8 / 1.16E-02 / Replication recombination and repair
NMB0594 / 1.4 / 2.28E-02 / Signal transduction mechanisms
NMB0595 / 2.0 / 1.97E-02 / Signal transduction mechanisms
NMB1500 / 1.5 / 3.65E-02 / Signal transduction mechanisms
NMB1735 / relA / 1.4 / 3.11E-02 / Signal transduction mechanisms
NMB0556 / 1.9 / 2.35E-03 / Transcription
NMB0712 / rpoH / 1.7 / 1.11E-02 / Transcription
NMB1711 / 1.3 / 3.91E-02 / Transcription
NMB0204 / 1.7 / 1.63E-02 / Translation
NMB1025 / 1.9 / 1.61E-04 / Translation
NMB1339 / proS / 1.8 / 1.15E-02 / Translation
NMB1538 / rpoD / 1.6 / 1.31E-02 / Translation
NMB2093 / map / 1.9 / 5.17E-04 / Translation