Supplemental Table 1 Putative Cis-Acting Elements of Ghpaos

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GhPAO1 / GhPAO2 / GhPAO3 / GhPAO4 / GhPAO5 / GhPAO6 / GhPAO7 / GhPAO8 / GhPAO9 / GhPAO10 / GhPAO11 / GhPAO12
+4cl-CMA2b / +AAGAA-motif / +AT-rich sequence / +5UTRPy-rich stretch / +5UTRPy-rich stretch / +3-AF1 binding site / +4cl-CMA2b / +ABRE / +5UTRPy-rich stretch / +5UTRPy-rich stretch / +5UTRPy-rich stretch / +5UTRPy-rich stretch
+5UTRPy-rich stretch / +ABRE / +ATCT-motif / +AAAC-motif / +A-box / +5UTRPy-rich stretch / +AAGAA-motif / +ACE / +AAGAA-motif / +AAAC-motif / +A-box / +AAGAA-motif
+AAGAA-motif / +ATCT-motif / +Box 4 / +ARE / +ACE / +AAGAA-motif / +AC-I / +ATCT-motif / +ABRE / +AAGAA-motif / +AAAC-motif / +ABRE
+AC-I / +Box 4 / +Box I / +AuxRR-core / +ARE / +ABRE / +AC-II / +Box I / +ACE / +ARE / +AAGAA-motif / +AC-II
+AC-II / +Box I / +CAAT-box / +Box 4 / +ATC-motif / +AC-II / +ARE / +CAAT-box / +ATCT-motif / +AT-rich element / +ACE / +ACE
+Box 4 / +Box-W1 / +GA-motif / +Box I / +Box 4 / +ARE / +ATCC-motif / +CAT-box / +Box 4 / +AT1-motif / +ARE / +ARE
+Box II / +CAAT-box / +GCC box / +Box-W1 / +Box-W1 / +AuxRR-core / +Box 4 / +CGTCA-motif / +CAAT-box / +Box 4 / +Box 4 / +AuxRR-core
+CAAT-box / +CAT-box / +HSE / +CAAT-box / +CAAT-box / +Box I / +Box II / +EIRE / +G-Box / +Box I / +Box I / +Box I
+CGTCA-motif / +CGTCA-motif / +MBS / +CAG-motif / +CAT-box / +Box-W1 / +CAAT-box / +G-Box / +G-box / +CAAT-box / +CAAT-box / +Box-W1
+CTAG-motif / +ERE / +Skn-1_motif / +CAT-box / +CCGTCC-box / +CAAT-box / +CGTCA-motif / +G-box / +GA-motif / +CAG-motif / +CCAAT-box / +CAAT-box
+I-box / +G-Box / +Sp1 / +G-box / +CGTCA-motif / +CGTCA-motif / +CTAG-motif / +GAG-motif / +GCC box / +ERE / +CCGTCC-box / +CGTCA-motif
+L-box / +G-box / +TATA-box / +GARE-motif / +GA-motif / +G-Box / +ELI-box3 / +GARE-motif / +GCN4_motif / +G-box / +CGTCA-motif / +G-Box
+MBS / +GARE-motif / +TC-rich repeats / +GATA-motif / +GAG-motif / +G-box / +G-Box / +GATA-motif / +GT1-motif / +GT1-motif / +GA-motif / +G-box
+P-box / +GT1-motif / +TCA-element / +GT1-motif / +GARE-motif / +GCN4_motif / +G-box / +GCN4_motif / +HSE / +HSE / +GAG-motif / +GARE-motif
+Skn-1_motif / +HSE / +TCCC-motif / +I-box / +GATA-motif / +HSE / +GT1-motif / +GT1-motif / +LTR / +I-box / +GARE-motif / +GC-motif
+TATA-box / +I-box / +TCT-motif / +LTR / +GT1-motif / +I-box / +L-box / +HSE / +MBS / +Skn-1_motif / +GATA-motif / +GCN4_motif
+TC-rich repeats / +LTR / +Unnamed__4 / +MBS / +LAMP-element / +L-box / +MBS / +I-box / +Skn-1_motif / +TATA-box / +GT1-motif / +GT1-motif
+TCCACCT-motif / +MBS / +Unnamed__6 / +Skn-1_motif / +LTR / +MBS / +P-box / +MBS / +Sp1 / +TCA-element / +HSE / +HSE
+TCT-motif / +MBSI / +box E / +TATA-box / +MBS / +MRE / +Skn-1_motif / +MBSI / +TATA-box / +TCT-motif / +I-box / +I-box
+TGACG-motif / +Skn-1_motif / +circadian / +TC-rich repeats / +O2-site / +Skn-1_motif / +TATA-box / +P-box / +TC-rich repeats / +Unnamed__4 / +L-box / +MBS
+Unnamed__13 / +Sp1 / +TCT-motif / +P-box / +Sp1 / +TC-rich repeats / +Skn-1_motif / +TCCC-motif / +as-2-box / +MBS / +Skn-1_motif
+Unnamed__4 / +TATA-box / +Unnamed__1 / +Skn-1_motif / +TATA-box / +TCA-element / +Sp1 / +TCT-motif / +circadian / +O2-site / +Sp1
+chs-CMA2a / +TC-rich repeats / +Unnamed__3 / +Sp1 / +TC-rich repeats / +TCCACCT-motif / +TATA-box / +Unnamed__1 / +Skn-1_motif / +TATA-box
+circadian / +TCT-motif / +Unnamed__4 / +TATA-box / +TCCACCT-motif / +TCT-motif / +TC-rich repeats / +Unnamed__3 / +Sp1 / +TC-rich repeats
+TGACG-motif / +W box / +TC-rich repeats / +TCCC-motif / +TGACG-motif / +TCA-element / +Unnamed__4 / +TATA-box / +TCCACCT-motif
+Unnamed__1 / +TCA-element / +TGACG-motif / +Unnamed__1 / +TCT-motif / +Unnamed__6 / +TATCCAT/C-motif / +TCCC-motif
+Unnamed__2 / +TCCC-motif / +Unnamed__1 / +Unnamed__3 / +TGA-element / +circadian / +TC-rich repeats / +TGACG-motif
+Unnamed__3 / +TGA-box / +Unnamed__13 / +Unnamed__4 / +TGACG-motif / +TCA-element / +Unnamed__1
+Unnamed__4 / +TGACG-motif / +Unnamed__3 / +as-2-box / +Unnamed__1 / +TCCC-motif / +Unnamed__13
+W box / +Unnamed__11 / +Unnamed__4 / +chs-CMA2a / +Unnamed__2 / +TGA-box / +Unnamed__3
+box II / +Unnamed__4 / +W box / +Unnamed__3 / +TGACG-motif / +Unnamed__4
+circadian / +W box / +Unnamed__4 / +Unnamed__1 / +W box
+circadian / +box II / +Unnamed__3 / +circadian
+circadian / +Unnamed__4 / +rbcS-CMA7a
+box S
+chs-CMA1a
+circadian

Supplemental Table 1 Putative cis-acting elements of GhPAOs

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