Supplementary Table 1 Functional Roles of Candidate Genes Identified in the QTL Regions

Supplementary table 1 Functional roles of candidate genes identified in the QTL regions based on literature

Chr / QTL / Marker name / Gene ID / Description / Functional role / Reference*
SBI-10 / Xtxp331-SvPEPcA / XnhsbmSFC1 / Sb10g020820 / Serine carboxypeptidase family protein / Defense responses against biotic stress / Liu et al. (2008)
XnhsbmSFC2 / Sb10g020850 / Nac6 protein / Biotic and abiotic stress / Olsen et al. (2005)
XnhsbmSFC3 / Sb10g020860 / Nac5 prtoein / Biotic and abiotic stress / Olsen et al. (2005)
XnhsbmSFC4 / Sb10g021130 / Elicitor inducible beta-1,3-glucanase / Insect resistance / Sardesai et al. (2005)*
XnhsbmSFC5 / Sb10g021360 / MYB transcription factor / Hypersensitive response and defense / Raffaele et al. (2008)
XnhsbSFCILP2 / Sb10g010680 / NBS-LRR type R protein, Nbs1-Pi2--a / Disease and pest resistance / Du et al. (2009)*
SBI-10 / Xgap1-Xcup16 / XnhsbmSFC8 / SB10g025053 / Glossy15 / Insect resistance and wax synthesis / Brooks et al. (2005)*
XnhsbmSFC10 / Sb10g025180 / Phox (PX) domain-containing protein / Signalling / Xu et al. (2001)
XnhsbmSFC12 / Sb10g025310 / Ankyrin repeat containing protein / Systemic acquired resistance / Cao et al. (1997)
XnhsbmSFC13 / Sb10g025740 / NADPH HC toxin reductase / Disease resistance / Han et al. (1997)
XnhsbmSFC14 / Sb10g026080 / Kelch repeat containing F-box protein / Defense responses and diverse cellular procesess / Kuroda et al. (2002)
XnhsbmSFC16 / Sb10g026130 / 4-coumarate--CoA ligase 4CL2 / Defense related mechanisms / Hu et al. (1998)
XnhsbmSFC17 / Sb10g026190 / Homogentisate phytyl transferase vte2 / Tocopherol biosynthesis and defense / Sattler et al. (2006)
XnhsbmSFC19 / Sb10g026340 / Putative leucine-rich repeat transmembrane protein kinase / Meristem growth and defense / Dievart and Clark (2004)
XnhsbmSFC20 / Sb10g026480 / Skp1 protein / Induced defense response / Yin et al. (2009)
XnhsbmSFC21 / Sb10g026520 / Peptidyl-prolyl cis-trans isomerise / Biotic and abiotic stress / Meza-Zepeda et al. (1998)
XnhsbmSFC23 / Sb10g027100 / NAC domain protein NAC1 / Disease resistance / Oh et al. (2005)
XnhsbmSFC26 / Sb10g027200 / Zinc finger (C3HC4-type RING finger) protein / Botic and abiotic stress resistance / Zeba et al. (2006)
XnhsbmSFC27 / Sb10g027220 / Auxin response factor 17 / Plant growth and stress response / Mallory et al. (2005)
XnhsbmSFC28 / Sb10g027280 / Putative transcription factor GAMyb / Plant growth and development / Woodger et al. (2003)
XnhsbmSFC29 / Sb10g027430 / Putative cytochrome P450 / Biotic and abiotic stress / Narusaka et al. (2004)
XnhsbmSFC30 / Sb10g027490 / Class III peroxidase 89 precursor / Defense responses to wounding / Espelie et al. (1986)
XnhsbmSFC32 / Sb10g027610 / EF-hand Ca2+-binding protein CCD1 / Biotic and abiotic stress response / Alvarado-Gutiérrez et al. (2008)
Chr / QTL / Marker name / Gene ID / Description / Functional role / Reference*
XnhsbmSFC34 / Sb10g028000 / Cysteine protease Mir1 / Insect resistance / Pechan et al. (2000)*
XnhsbmSFC36 / Sb10g028060 / Glycosyl hydrolase family 1 protein / Biotic, abiotic stresses and cell wall modelling / Opassiri et al. (2006)
XnhsbmSFC37 / Sb10g028170 / Brassinosteroid insensitive 1 gene / Signalling, development and defense / Friedrichsen et al. (2000)
XnhsbmSFC41 / Sb10g029175 / Beta-amyrin synthase / Triterpene synthesis and biotic stress / Ormaetxe et al. (2003)
XnhsbSFCILP7 / Sb10g025283 / NBS-LRR disease resistance protein / Disease and pest resistance / Hulbert et al. (2001)
XnhsbSFCILP11 / Sb10g025850 / GDSL-lipase / Cuticulat wax biosynthesis / Mintz-Oron et al. (2008)
XnhsbSFCILP12 / Sb10g025910 / Fibroin heavy chain / Leaf trichome specific expression / NCBI-Uigene database (2008)
XnhsbSFCILP17 / Sb10g026548 / Hydroxyproline-rich glycoprotein / Biotic stress / Showwalter et al. (1985)
XnhsbSFCILP20 / Sb10g026750 / Zinc finger POZ domain protein / Develpmental responses and defense / Takatsuji (1998)
XnhsbSFCILP24 / Sb10g027010 / Tubulin beta-2/beta-3 chain / Leaf trichome specific expression / Jakoby et al. (2008)
XnhsbSFCILP30 / Sb10g027970 / Glycosyltransferase / Biotic and abiotic stresses / Aksamit-Stachurska et al. (2008)
XnhsbSFCILP40 / Sb10g029150 / Cycloartenol synthase / Disease resistance / Qiu et al. (2008)
SBI-05 / Xtxp65-Xtxp30 / XnhsbmSFC43 / Sb05g001740 / Long chain acyl-CoA synthetase / Cuticulat wax biosynthesis / Schnurr et al. (2004)
XnhsbmSFC44 / Sb05g001770 / GDSL-like Lipase/Acylhydrolase family protein / Cuticulat wax biosynthesis / Cominelli et al. (2008)
XnhsbmSFC45 / Sb05g002110 / Calcium-dependent protein kinase / Plant defense response / Romeis et al. (2001)
XnhsbmSFC47 / Sb05g002285 / Pectinesterase / Cell wall degradation and biotic stress / Freitas-Astúa et al. (2007)
XnhsbmSFC48 / Sb05g002410 / EF hand family protein / Biotic and abiotic stress / Day et al. (2002)
XnhsbmSFC50 / Sb05g002500 / Ankyrin repeat family protein / Systemic acquired resistance / Cao et al. (1997)
XnhsbmSFC51 / Sb05g002520 / Strictosidine synthase family protein / Insect resistance / Sarosh and Mekjer (2007)
XnhsbmSFC61 / Sb05g003240 / BZIP transcription factor / Disease resistance and abiotic stress / Zhang et al. (2008)
XnhsbmSFC62 / Sb05g003400 / No apical meristem (NAM) protein / Biotic and abiotic stress / Olsen et al. (2005)
XnhsbmSFC65 / Sb05g003450 / RAV2-like DNA binding protein / AP2/EREBP-mediated defense pathway / Li et al. (2011)
XnhsbmSFC67 / Sb05g003630 / Harpin-induced protein 1 (Hin1) / Pathogen induced defense response / Dörmann et al. (2000)
XnhsbmSFC69 / Sb05g003690 / Mitogen-activated protein kinase kinase / Insect resistance and signalling / Heinrich et al. (2011)
XnhsbmSFC71 / Sb05g003700 / Epoxide hydrolase / Wax metabolism and biotic stress / Gomi et al. (2003)
Chr / QTL / Marker name / Gene ID / Description / Functional role / Reference*
XnhsbSFCILP43 / Sb05g002270 / Lipase / Wax metabolism / Mintz-Oron et al. (2008)
XnhsbSFCILP58 / Sb05g003830 / NB-ARC domain, putative / Disease resitance / Takken et al. (2006)
XnhsbSFCILP62 / Sb05g003920 / NBS-LRR type R protein, Nbs1-Pi2 / Disease and pest resistance / Hulbert et al. (2001)
SBI-03 / Xtxp59-Xtxp336 / XnhsbmSFC78 / Sb03g028070 / Protein phosphatase 2C / Disease resistance and plant growth / Hu et al. (2009)
XnhsbmSFC81 / Sb03g028340 / Calcium-dependent protein kinase / Plant defense response / Romeis et al. (2001)
XnhsbmSFC82 / Sb03g028368 / Cell division cycle gene CDC48 / Plant growth / Feiler et al. (1995)
XnhsbmSFC84 / Sb03g028430 / Sgt1 / Disease resistance and developmental responses / Azevedo et al. (2006)
XnhsbmSFC87 / Sb03g028740 / Mitogen-activated protein kinase 10 / Insect resistance and signalling / Heinrich et al. (2011)
XnhsbmSFC88 / Sb03g028790 / Beta 1,3-glucanase-like / Plant defense response / Zemanek et al. (2002)
XnhsbmSFC89 / Sb03g028930 / Pectinesterase / Cell wall degradation and biotic stress / Freitas-Astúa et al. (2007)
XnhsbmSFC93 / Sb03g029600 / Lipase / Wax metabolism / Mintz-Oron et al. (2008)
XnhsbSFCILP68 / Sb03g028240 / Indole-3-acetic acid-amido synthetase GH3.5 / Plant growth and stress response / Eun park et al. (2007)
XnhsbSFCILP64 / Sb03g027600 / Iintegral membrane Yip1 family protein / Vacuolar trafficking and plant development / Heo et al. (2010)
XnhsbSFCILP75 / Sb03g029430 / Serine/threonine-protein kinase 12 / Disease resistance / Cao et al. (2011)
SBI-01 / Xcup24-Drenhsbm64 / XnhsbmSFC95 / Sb01g014130 / Auxin-responsive protein IAA30 / Plant growth and developmental responses / Kulaeva and Prokoptseva (2004)
XnhsbmSFC96 / Sb01g014150 / Leucine Rich Repeat family protein / Plant growth and developmental responses / Jung et al. (2004)
XnhsbmSFC99 / Sb01g014720 / Serine/threonine-protein kinase SAPK10 / Disease resistance / Cao et al. (2011)
XnhsbmSFC101 / Sb01g015040 / Cytochrome P450 85A1 / Biotic and abiotic stress / Narusaka et al. (2004)
XnhsbSFCILP81 / Sb01g014730 / Serine protease inhibitor / Insect resistance / Hartl et al. (2010)
XnhsbSFCILP83 / Sb1g015030 / PfkB-type carbohydrate kinase family protein / Soyabean Cyst nematode resistance / Ithal et al. (2007)
SBI-07 / Xtxp36-Xtxp312 / XnhsbmSFC105 / Sb07g003570 / Cycloartenol synthase / Sterol biosynthesis, biotic and abiotic stresses / Tholl (2006)
XnhsbmSFC106 / Sb07g003590 / Pectinesterase / Cell wall degradation and biotic stress / Freitas-Astúa et al. (2007)
XnhsbmSFC107 / Sb7g003810 / Mitogen-activated protein kinase / Insect resistance and signalling / Heinrich et al. (2011)
XnhsbmSFC110 / Sb07g003860 / Caffeic acid 3-O-methyltransferase / Lignin biosynthesis / Zhao and Dixon (2011)*
Chr# / QTL / Marker name / Gene ID / Description / Functional role / Reference*
XnhsbmSFC111 / Sb07g003970 / Stomatin / Disease resistance / Nadimpalli et al. (2000)
XnhsbmSFC112 / Sb07g004480 / Terpene synthase 10 / Insect resistance / Köllner et al. (2009)
XnhsbmSFC113 / Sb07g004490 / Terpene synthase 5 / Insect resistance / Köllner et al. (2009)
XnhsbmSFC114 / Sb07g004540 / Haloacid dehalogenase / Insect resistance / Liu et al. (2005)
XnhsbSFCILP85 / Sb07g002710 / Putative beta-1,3-glucanase / Plant defense response / Zemanek et al. (2002)
XnhsbSFCILP88 / Sb07g003010 / Tryptophan decarboxylase / Insect resistance / Thomas et al. (1995)
XnhsbSFCILP93 / Sb07g003636 / LRK1 protein / Defense signalling pathway / Scheer and Ryan (2002)*
XnhsbSFCILP94 / Sb07g003900 / NAC2 protein / Biotic and abiotic stress / Olsen et al. (2005)

# Chromosome; * References marked with an asterisk are provided in the main document. All other references are provided as supplementary references