Publications (Including Manuscripts Submitted and Approved, Abstracts, Proceedings And

PUBLICATIONS (INCLUDING MANUSCRIPTS SUBMITTED AND APPROVED, ABSTRACTS, PROCEEDINGS AND OTHER MISCELLANEOUS REPORTS:

ARKANSAS, UNIVERSITY OF ARKANSAS, Fayetteville, AR

Bailes, S., J. Devers, J.D. Kirby and D.D. Rhoads. 2005. A Fast, Simple Protocol for DNA Isolation from Blood for High Throughput PCR or Restriction Endonuclease-based Genotyping. Poultry Science (In Revision).

Collins, K., 2005. Chromosomal Mapping and QTL Analysis of Estrogen Receptors in the Chicken. MS Degree, University of Arkansas.

Froman, D.P., J.D. Kirby, and D.D. Rhoads. 2005. An Expressed Sequence Tag Analysis of the Chicken Reproductive Tract Transcriptome. Poultry Science (In Revision).

Jurkevich, A., L.R. Berghman, L.E. Cornett and W.J. Kuenzel. 2005. Characterization and immunohistochemical visualization of the vasotocin VT2 receptor in the pituitary gland of the chicken, Gallus gallus. Gen. Comp. Endocrinol. 143:82-91.

Kuenzel, W.J., M.B. Ferrari, T. Rathinam and H. Li. 2005. The possible role of the lateral septal organ in housing encephalic photoreceptors responsible for regulating gonadal development. In: Functional Avian Endocrinology. (Eds. A Dawson and P.J. Sharp), Narosa Publishing House, New Delhi, India, pp. 129-140.

Kuenzel, W.J., A.M. Rowland, P. Pillai, T. O’Connor-Dennie, J.L. Emmert and R.F. Wideman. 2005.The use of vitamin A deficient diets and jugular vein ligation to increase intracranial pressure in chickens, Gallus gallus. Poultry Sci.(in press).

Kuenzel, W.J., R.F. Wideman, M. Chapman, C. Golden and D.M. Hooge. 2005. A Practical method for induced moulting of caged layers that combines full access to feed and water, dietary thyroactive protein, and short day length. World’s Poultry Sci. J. 61:599-624.

Rathinam, T. and W.J. Kuenzel. 2005. Attenuation of gonadal response to Photostimulation following ablation of neurons in the lateral septal organ of chicks. Brain Res. Bull. 64:455-461.

The Avian Brain Nomenclature Consortium. 2005. Jarvis, E.D., O. Güntürkün, L. Bruce, A. Csillag, H. Karten, W. Kuenzel, L. Medina, G. Paxinos, D.J. Perkel, T. Shimizu, G. Striedter, J. Martin Wild, G.F. Ball, J. Dugas-Ford, S.E. Durand, G.E. Hough, S. Husband, L. Kubikova, D.W. Lee, C.V. Mello, A. Powers, C. Stang, T.V. Smulders, K. Wada, S.A. White, K. Yamamoto, J.Yu, A. Reiner and A.B. Butler. Avian brains and a new understanding of vertebrate brain evolution. Nature Rev. Neurosci. 6(2): 151-159.

CALIFORNIA, CITY OF HOPE, Duarte, CA

Miller, M.M., C. Wang, E. Parisini, R.D. Coletta, R.M. Goto, S.Y. Lee, D.C. Barral, M. Townes, C. Roura-Mir, H.L. Ford, M.B. Brenner, C.C. Dascher. 2005. Characterization of two avian MHC-like genes reveals an ancient origin of the CD1 family. Proc Natl Acad Sci U S A. 102(24):8674-8679.

Hunt, HD, R.M. Goto, D.N. Foster, L.D. Bacon, M.M. Miller. At least one YMHCI molecule in the chicken is alloimmunogenic and dynamically expressed on spleen cells during development. Immunogenetics, in press.

Miller, M.M. Why Do We Need to Conserve What We Have? A Post-Genome Sequencing Perspective on Existing Chicken Strains. Poultry Sci, in press.

Foster, T. L., R.M. Goto, W.M. Yokoyama, and Miller, M. M., Reporter cell assays reveal interaction between a putative NK cell receptor encoded within chicken MHC B and a nonclassical class I allele encoded within chicken MHC Y. Abstract #250, Experimental Biology 2005, San Diego, California.

CALIFORNIA, UNIVERSITY OF CALIFORNIA, DAVIS, Davis, CA

Chang, H., M.E. Delany. 2005. Alternative splice variants of the chicken telomerase reverse transcriptase (chTERT) catalytic subunit in vivo and in vitro. International Plant and Animal Genome XIII, San Diego, CA.

Delany, M.E. 2005. Avian genetic stocks: the high and low points from an academia researcher. Ancillary Scientists Symposium: Conservation of Avian Genetics Resources: Current Opportunities and Challenges. Poultry Science Association Annual Meeting. Auburn University, Auburn AL. July 31-August 3, 2005. Poultry Science 84(s1):2.

Delany, M.E. 2005. Development of high resolution integrated maps for the identification of genes and other DNA sequences of economic importance in poultry. (for NC1008 Multi-state Research Objective 1).

Delany, M.E., L.M. Daniels, T.M. Gessaro, K.L. Rodrigue. 2005. Organization and inheritance provide clues to the function of the megabase telomere arrays of the chicken genome. Telomerase and Telomerase. Cold Spring Harbor Laboratory, Cold Spring Harbor NY. May 4-8, 2005.

Delany, M.E., T.M. Gessaro, K.L. Rodrigue, L.M. Daniels. 2005. Cytogenomic approach to mapping the mega-telomere arrays of the chicken genome. Workshop on Chicken Genomics and Development. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY. May 8-11, 2005.

Delany, M.E., T. M. Gessaro. 2005 Stocks information for the diverse chicken biology research communities. Workshop on Chicken Genomics and Development, May 8-11, 2005. Cold Spring Harbor Laboratory, Cold Spring Harbor NY.

O’Hare, T.H. 2005. Analysis of telomerase gene expression during normal growth and development of the chicken using quantitative real – time PCR. University of California, Davis, CA. (M.S.).

O’Hare, T.H., M.E. Delany. Telomerase gene expression in the chicken: telomerase RNA (TR) and reverse transcriptase (TERT) transcript profiles are tissue-specific and correlated with telomerase activity. AGE. In press.

O’Hare, T.H., M.E. Delany. 2005. Developmental profiling of telomerase genes by quantitative real-time pcr in the chicken embryo. Poultry Science Association Annual Meeting. Auburn University, Auburn AL. July 31-August 3, 2005. Poultry Science 84(s1):38.

Rodrigue, K.L., May, B.P., Famula, T.R., M.E. Delany. 2005. Meiotic instability of chicken ultra-long telomeres and mapping of a 2.8 megabase array to the W-sex chromosome. Chromosome Research 13:581-591.

Romanov, M.N., L.M. Daniels, J.B. Dodgson, M.E. Delany. 2005. Integration of the cytogenetic and physical maps of chicken chromosome 17. Chromosome Research 13:215-222.

Schmid, M., Nanda, I., Hoehn, H., Schartl, M., Haaf, T., Buerstedde, J.-M., Arakawa, H., Caldwell, R.B., Weigend, S., Burt, D.W., Smith, J., Griffin, D.K., Masabanda, J., Groenen, M.A.M., Crooijmans, R.P.M.A., Vignal, A., Fillon, V., Morisson, M., Pitel, F., Vignoles, M., Garrigues, A., Gellin, J., Rodionov, A.V., Galkina, S.A., Lukina, N.A., Ben-Ari, G., Blum, S., Hillel, J., Twito, T., Lavi, U., David, L., Feldman, M.W., Delany, M.E., Conley, C.C., Fowler, V.M., Hedges, S.B., Godbout, R., Katyal, S., Smith, C., Hudson, Q., Sinclair, A., Mizuno, S. 2005. Second report on chicken genes and chromosomes. Cytogenetic and Genome Research 109:415-479.

Swanberg, S.E. 2005. Telomere length regulation in an avian model. University of California, Davis, CA. (Ph.D.).

Swanberg, S.E., M.E. Delany. Telomeres in aging: Birds. In Handbook of Models for Human Aging (editor: M. Conn), Chapter 29, p. 339-349. Academic Press (Elsevier, Inc.). Burlington MA (USA). In press.

Swanberg, S.E., M.E. Delany. 2005. Differential expression of genes associated with telomere length homeostasis and oncogenesis in an avian model. Mechanisms of Aging and Development 126:1060-1070.

DELAWARE, UNIVERSITY OF DELAWARE, Newark, DE

Bliss, T.W., J. E. Dohms, M.G. Emara, C.L. Keeler, Jr. 2005. Gene expression profiling f avian macrophage activation. Vet. Immunol. Immunopathol., 105:289-99.

Kim, S., H. Kim, M.G. Emara. 2005. Skp2 and Other F-box proteins in the Chicken. Plant and Animal Genome XIII Meeting, San Diego, CA. January 15-19, 2005.

GEORGIA, UNIVERSITY OF GEORGIA, Athens, GA

Aggrey, SE., G.M. Pesti, W. Zhang, G.A. Ankra-Badu, J.P. McMurtry, R.I. Bakalli, H.M. Edwards, 2005. Molecular and quantitative genetics aspects of phytate phosphate utilization in growing birds. Page 36-57. In: Proc. 54th Annual National Roundtable. US Poultry and Egg Association, St. Louis.

Abasht, B., F. Pitel, S. Lagarrigue, E. Bihan-Duval, P. Pascal, D. Olivier, J. Simon, L. Cogburn, S. Aggrey, A. Vignal, M. Douaire, 2006. Fatness QTL on chicken chromosome 5 and interaction with sex. Genet. Sel. Evol. 38: In press.

Ankra-Badu, G.A., S.E. Aggrey, 2006. Identification of candidate genes at quantitative trait loci on chicken Chromosome Z using orthologous comparison of chicken, mouse, and human genomes. In Silico Biology (in press; published online Dec 2005).

Duclos, M.J., C. Jenkins, E. Le Bihan-Duval, J. Simon, T.E. Porter, S.E. Aggrey, L. Cogburn, 2006. Contribution of functional genomics to the identification of genes controlling growth, body composition and breast muscle quality in chickens. World’s Poult. Sci. J. (In Press).

Lagarrigue, S., F. Pitel, W. Carré, B. Abasht, P. Le Roy, A. Neau, Y. Amigues, M. Sourdioux, J. Simon, L. Cogburg S. Aggrey, B. Leclercq, A. Vignal, Douaire M., 2006. Mapping quantitative trait loci affecting fatness and breast muscle weight in experimental meat-type chicken lines divergently selected on fatness. Genet. Sel. Evol. 38:85-97.

Zhang, W, S.E. Aggrey , G.M. Pesti , R.I. Bakalli , H.M. Edwards Jr., 2005 Genetic analysis on the direct response to divergent selection for phytate phosphorus bioavailability in a randombred chicken population. Poult. Sci. 84:370-375.

Zhang, W, S.E. Aggrey, G.M. Pesti , R.I. Bakalli, H.M. Edwards Jr., 2005. Correlated responses to divergent selection for phytate phosphorus bioavailability in a randombred chicken population. Poult. Sci. 84: 536-542.

INDIANA, PURDUE UNIVERSITY, West Lafayette, IN

Cheng, H., W. M. Muir, 2005. The effects of genetic selection for survivability and productivity on chicken physiological homeostasis. Worlds Poultry Science Journal 61: 383-397.

Devlin, R.H. Sundström, L.F., W.M. Muir. Interface of biotechnology and ecology for environmental risk assessments of transgenic fish. Trends in Biotechnology (In Press).

Festucci-buselli, R. A., A. S. Carvalho-dias, M. De Oliveira-andrade, C. Caixeta-nunes, H. M. LI et al., 2005 Expression of Cyp6g1 and Cyp12d1 in DDT resistant and susceptible strains of Drosophila melanogaster. Insect Molecular Biology 14: 69-77.

Hostetler, H.A., P. Collodi, R.H. Devlin, W.M. Muir. 2005. Improved Phytate Phosphorus Utilization by Japanese Medaka Transgenic for the Aspergillus niger Phytase Gene. Zebrafish 2:19-31.

Muir, W. M., 2005 Incorporation of competitive effects in forest tree or animal breeding programs. Genetics 170: 1247-1259.

Muir, W.M., J. Romero-Severson, S.D. Rider Jr., A. Simons, and J. Ogas 2005. Application of One Sided t-tests and a Generalized Experiment Wise Error Rate to High-Density Oligonucleotide Microarray Experiments: An Example Using Arabidopsis J. Data Science, (In Press).

Pedra, J. H. F., R. A. Festucci-buselli, W. L. sun, W. M. Muir, M. E. scharf et.al., 2005. Profiling of abundant proteins associated with dichlorodiphenyltrichloroethane resistance in Drosophila melanogaster. Proteomics 5: 258-269.

IOWA, IOWA STATE UNIVERSITY, Ames, IA

Berry, N. U., J.J. van der Poel, S.J. Lamont. 2005. Polymorphism in TAP1, TAP2, TAPASIN, Genes of the Chicken and MHC-linked Response to GAT. Page 110 in Proc Third Internatl Symp on Genetics of Animal Health, ed.

Ciraci, C., J.H. Cheeseman, S.J. Lamont. 2005. Early apoptotic gene expression levels in three chicken genetic lines exposed to Salmonella enteritidis. Page 112 in Proc Third Internatl on Genetics of Animal Health, ed. S. J. Lamont, M. Rothschild and D. L. Harris. Iowa State University, Ames, IA.

Hangalapur, B. N., M.G. Kaiser, J.J. van der Poel, H.K. Parmentier, S.J. Lamont. 2005. Cold stress equally enhances in vivo pro-inflammatory cytokine gene expression in chicken lines divergently selected for antibody responses. Develop. Comp. Immunol. (in press; published on-line August 2005).

Hasenstein, J. R., G. Zhang, S.J. Lamont. 2005. Analysis of five Gallinacin genes in a salmonella enteritidis resource population in poultry. Page 107 In: Proc. Plant and Animal Genome XIII, San Diego, CA, January 15-19.

Hasenstein, J. R., G. Zhang, S.J. Lamont. 2005 Small Peptide, Sizable Effects: Gallinacin 7 and Salmonella Resistance in Chickens, pp. 118 in Proc Third International Symposium on Genetics of Animal Health, ed. S. J. Lamont, M. Rothschild and D. L. Harris. Iowa State University, Ames, IA.

Heifetz, E.M, J.C.M. Dekkers, J.E. Fulton, N. O’Sullivan, H. Cheng. 2005. Candidate Genes for Resistance to Marek’s Disease in Chickens. Proc. Third Int. Symposium on Genetics of Animal Health, July 13-14, Iowa State University.

Heifetz, E. M., J.E. Fulton, N. O’Sullivan, M. Soller, J.C.M. Dekkers. 2005. Interval mapping of QTL for Marek’s disease resistance with selective DNA pooling in crosses of commercial layer chicken lines. Abstract presented at the 2005 Midwest Animal Science meeting, J. Anim. Sci. 83 (Suppl. 1).

Heifetz, E. M., J.E. Fulton, N. O'Sullivan, H. Zhao, J.C.M. Dekkers, M. Soller. 2005. Extent and consistency across generations of linkage disequilibrium in commercial layer chicken breeding populations. Genetics 171: 1173-1181.

Heifetz, E. M., J.E. Fulton, N. O’Sullivan, H. Zhao, J.C.M. Dekkers, M. Soller. 2005. Marker to marker linkage disequilibrium in commercial chicken breeding populations. Abstract presented at the 2005 Midwest Animal Science meeting, J. Anim. Sci. 83 (Suppl. 1).

Kaiser, M. G., P. Kaiser, S.J. Lamont. 2005. Genetic line differences in IL- 2, IL-6, IL-5, IL-18, and IFN-gamma mRNA levels in response to salmonella exposure in chickens. Page 547 In: Proc. Plant and Animal Genome XIII, San Diego, CA, January 15-19.

Kaiser, M.G., P. Kaiser, S.J. Lamont. 2005. Genetic line differences in IL-2, IL-6, IL-15, IL-18, TGF- β4 and IFN-γ cecal mRNA levels in response to Salmonella exposure in chickens. in: Proc. Third International symposium on Genetics of Animal Health. eds. Susan J. Lamont, Max F. Rothschild and D.L. Hank Harris. Ames IA. p. 22.

Lamont, S. J. A bird’s-eye view of progress in avian immunology. Pp 131. in Proc 86th Conf Research Workers in Animal Diseases, ed. Robert P. Ellis, Blackwells Publ, Ames, IA.

Lamont, S. J., M. Rothschild, D. L. Harris. Iowa State University, Ames, IA. Cheeseman, J. H., Kaiser, P., and Lamont, S. J. 2005. Cytokine gene expression in spleen and ceca of three genetic lines of chickens exposed to Salmonella enteritidis. Page 111 in Proc Third Internatl Symp on Genetics of Animal Health, ed. S. J. Lamont, M. Rothschild and D. L. Harris. Iowa State University, Ames, IA.

Li, H., N. Deeb, C.M. Ashwell, S.J. Lamont. 2005. Chicken quantitative trait loci for growth and body composition associated with very low density apolipoprotein II gene. Poultry Sci. 84:697-703.

McElroy, J. P. 2005. Mapping Quantitative Trait Loci for Economic Traits in Chickens. Ph.D. dissertation. Iowa State University library.

McElroy, J. P., J.C.M. Dekkers, J.E. Fulton, N.P. O’Sullivan, M. Soller, E. Lipkin, W. Zhang, K.J. Koehler, S.J. Lamont, H.H. Cheng. 2005. Microsatellite markers associated with resistance to Marek’s disease in commercial layer chickens. Poultry Sci. 84:1678-1688.

McElroy, J. P., W. Zhang, K.J. Koehler, S.J. Lamont, J.C.M. Dekkers. 2005. Comparison of Cox, Weibull, and linear regression models to detect marker associations with survival traits using full and selective genotyping. Pp. 208. In: Proc. Plant and Animal Genome XIII, San Diego, CA, January 15-19.

Rothschild, M. F., S.J. Lamont, J.M. Reecy. 2005. Current status of animal genomics. In: Proc. Annual AAAS Meeting, Washington, DC, February 17-19.

Van der Poel, J.J., N.U. Berry, R. Onzima, S.J. Lamont. 2005. Polymorphism in TAP1, TAP2, and TAPASIN Genes Refine Definition of MHC Haplotypes. Page 22 in Proc 14th Annual Growth Factor & Signal Transduction Conf on the Integration of Structural and Functional Genomics. Iowa State University, Ames, IA. (Abstr.)