Supplementary Table S1 Length variation and G+C content of the cp trnL intron, 3'trnL exon, and trnL-F spacer in Taxaceae and Cephalotaxaceae

Taxon / Vouchera / GenBank acc.no.b / Length in bp (G+C, %)
trnL intron / 3'trnL exon / trnL-F spacer
complete / [PQRS] / P8 / P9

Taxus

Taxus cuspidata Siebold &
Zuccarini / JA001 / EF660637 / 448 (31.8) / (40.8) / (28.1) / (30.7) / 50 (44) / 315 (26.3)
AF506838 / 448 (31.8) / (40.8) / (28.1) / (30.7) / 50 (44) / 298 (25.3)*
Taxus cuspidata var. nana Rehder / DD001 / EF660616 / 448 (31.6) / (38.8) / (28.1) / (30.7) / 50 (44) / 315 (26.3)
Taxus yunnanensis W. C. Cheng
& L. K. Fu / CY001 / EF660605 / 448 (31.4) / (38.8) / (28.1) / (30.1) / 50 (44) / 355 (25.1)
Taxus chinensis (Pilger) Florin / SNJ001 / EF660633 / 448 (31.8) / (40.8) / (28.1) / (30.7) / 50 (44) / 307 (28.3)
Taxus mairei (Lemée & H. Léveillé)
L. K. Fu & Nan Li / LS001 / EF660632 / 440 (31.6) / (40.8) / (28.1) / (30.7) / 50 (44) / 314 (27.4)
Taxus wallichiana Zuccarini / CY007 / EF660620 / 449 (31.6) / (40.8) / (28.1) / (30.1) / 50 (44) / 315 (26.3)
Taxus contorta Griff. / JL001 / EF660638 / 448 (31.8) / (40.8) / (28.1) / (30.7) / 50 (46) / 307 (28)
Taxus sumatrana
(Miquel) de Laubenfels / Determann, ABG20051056
(ATLAN) / EF660609 / 448 (32.1) / (40.8) / (28.1) / (31.3) / 50 (44) / 315 (26.7)
Taxus× media / Ursem, HL200702 (DELF) / EF660639 / 448 (31.8) / (40.8) / (28.1) / (30.7) / 50 (44) / 315 (26.7)
Taxus brevifolia Nuttall / Spjut, 11835 / EF660604 / 449 (32.0) / (40.8) / (27.5) / (30.7) / 50 (44) / 303 (27.1)
Taxus baccata Linnaeus
/ Stevenson, 0000381 (OXF) /
EF660635
/ 448 (31.4) / (40.8) / (28.1) / (29.5) / 50 (44) / 316 (26.9)
Taxus×hunnewelliana
/ WC001 (WAT) /
EF017314
/ 448 (31.8) / (40.8) / (28.1) / (30.7) / 50 (44) / 315 (26.3)
Taxus canadensis Marshall
/ Bailleul, 1960-2000 (MTJB) /
EF660636
/ 448 (31.6) / (42.9) / (28.1) / (30.1) / 50 (46) / 315 (26.3)
AF506837
/ 448 (31.4) / (40.8) / (28.1) / (30.1) / 50 (44) / 311 (25.8)*
Taxus floridana Nuttall ex Chapman
/ Spjut, 12172 /
EF660614
/ 441 (31.4) / (40.8) / (28.1) / (29) / 50 (46) / 223 (33.6)
Taxus globosa Schlectendahl
/ Determann, ABG19971263
(ATLAN) /
EF660613
/ 442 (32.1) / (40.8) / (28.1) / (30.5) / 50 (44) / 302 (26.8)

Torreya

Torreya nucifera (L.)
Siebold & Zuccarini
/ Quinn, 876809 (NSW) /
EF660644
/ 462 (34.9) / (52.1) / (28.6) / (31.2) / 50 (46) / 370 (28.9)
Torreya yunnanensis

(W. C. Cheng & L. K. Fu) N. Kang

/ Geng, AF20070401 /

EF660625

/ 462 (34.9) / (52.1) / (28.6) / (31.2) / 50 (46) / 370 (28.9)

AY013731

/ 454 (34.9)* / (52.1) / (28.6) / (31.2) / 50 (46) / 370 (29.5)

Torreya fargesii Franchet

/ Wang, WH20070101
(WUCHB) /

EF660640

/ 462 (34.9) / (52.1) / (28.6) / (31.2) / 50 (46) / 370 (28.9)

Torreya jackii Chun

/ Zhang, HZ20070101
(HHBG) /

EF660624

/ 462 (35.4) / (52.1) / (29.6) / (31.7) / 50 (46) / 370 (28.9)

AY013732

/ 454 (35.4)* / (52.1) / (29.6) / (31.7) / 50 (46) / 370 (28.9)

Torreya grandis Fortune

/ Huang, LS20061206 /

EF660623

/ 462 (35.2) / (52.1) / (28.6) / (31.9) / 50 (46) / 370 (28.4)

Torreya taxifolia Arnott

/ Maerki, 20070301 /

EF660642

/ 463 (35.1) / (52.1) / (28.6) / (31.2) / 50 (46) / 371 (28.6)

Torreya californica Torrey

/ Maerki, 20070302 /

EF660643

/ 457 (35.4) / (50) / (28) / (31.7) / 50 (46) / 370 (29.2)

Amentotaxus

Amentotaxus formosana Li

/ Determann, ABG20010355
(ATLAN) /

EF660611

/ 477 (34.4) / (52.1) / (31.1) / (28.5) / 50 (46) / 404 (27.7)

AY013743

/ 456 (34.7)* / (52.1) / (31.1) / (28.4) / 51 (45.1) / 405 (27.4)

Amentotaxus argotaenia

(Hance) Pilger

/ Huang, LS20061201 /

EF660621

/ 468 (34.9)* / (52.1) / (31.1) / (28.9) / 50 (46) / 404 (26.7)

Amentotaxus yunnanensis H. L. Li

/ Geng, AF20070402 /

EF660622

/ 477 (34.9) / (52.1) / (31.1) / (28.9) / 50 (46) / 404 (27.7)

Austrotaxus spicata Compton

/ Determann, ABG20060714

(ATLAN)

/

EF660606

/ 447 (33.6) / (45.8) / (29.5) / (30.3) / 50 (46) / 371 (29.1)

AY013746

/ 438 (33.5)* / (45.8) / (29.5) / (30.3) / 50 (46) / 370 (28.4)
Pseudotaxus chienii W.C. Cheng / Huang, LS20061204 / EF660615 / 450 (34.3) / (50) / (29.9) / (28.1) / 50 (44) / 335 (28.1)
Cephalotaxaceae

Cephalotaxus sinensis

(Rehder & Wilson) H.L. Li

/ Huang, LS20061205 /

EF660628

/ 471 (35.5) / (52.1) / (30) / (32.8) / 50 (46) / 224 (33.9)

Cephalotaxus fortunei Hooker

/ Huang, LS20061202 /

EF660626

/ 472 (35.9) / (52.1) / (30) / (33.3) / 50 (46) / 223 (33.6)

Cephalotaxus latifolia Cheng et Fu

/ FCH001 /

EF017315

/ 472 (35.0) / (52.1) / (30) / (31.7) / 50 (48) / 223 (33.6)
Cephalotaxus lanceolata K.M. Feng / Determann, ABG19980147
(ATLAN) / EF660612 / 472 (35.7) / (52.1) / (30) / (32.8) / 50 (46) / 223 (33.6)
Cephalotaxus hainanensis H.L. Li / Xu, DZ200612 / EF660629 / 470 (35.1) / (53.2) / (29.1) / (32.1) / 50 (46) / 223 (34.1)
Cephalotaxus oliveri Masters / Liu, GL200703 / EF660619 / 472 (34.8) / (52.1) / (28.2) / (31.7) / 50 (46) / 223 (34.5)
Cephalotaxus fortunei var.
alpina H. L. Li / Geng, AF20070403 / EF660618 / 472 (35.4) / (52.1) / (30) / (32.6) / 50 (46.9) / 223 (33.6)
Cephalotaxus mannii Hooker / Determann, ABG20040402
(ATLAN) / EF660608 / 471 (35.3) / (52.1) / (29.1) / (32.4) / 50 (46) / 223 (33.6)
Cephalotaxus griffithii Hooker / Maxwell, 200705 / EF676091 / 472 (33.9) / (52.1) / (28.2) / (30.2) / 50 (46) / 223 (31.8)
Cephalotaxus wilsoniana Hayata / Determann, ABG20000105
(ATLAN) / EF660610 / 472 (35.0) / (50) / (29.1) / (32.8) / 50 (46) / 223 (33.6)
Cephalotaxus koreana Nakai / Maerki, 20070303 / EF660627 / 472 (35.0) / (50) / (29.1) / (32.8) / 50 (46) / 224 (33.9)
Cephalotaxus harringtonia var. drupacea (Siebold & Zucc.) Koidz / Maerki, 20070304 / EF660617 / 472 (35.5) / (52.1) / (30) / (32.8) / 50 (46) / 223 (33.6)
Cephalotaxus harringtonia
(Knight ex J. Forbes) K. Koch / Quinn, D141 (NSW) / EF660607 / 472 (35.5) / (52.1) / (30) / (32.8) / 50 (46) / 223 (33.6)
Cephalotaxus harringtonia
cv. fastigiata Ohwi / Zhang, HZ20070102
(HHBG) / EF660641 / 472 (35.0) / (50) / (29.1) / (32.8) / 50 (46) / 223 (33.6)
Podocarpaceae
Nageia nagi (Thunberg) Kuntze / Huang, LS20061203 / EF660630 / 448 (33.5) / (41.7) / (24.2) / (30.1) / 45 (31.1) / 368 (34.2)
AJ441091 / 447 (34.0) / (41.7) / (25.3) / (30.7) / 45 (31.1) / 368 (34.5)
Podocarpus macrophyllus
(Thunberg) Sweet / Zhang, HZ20070103
(HHBG) / EF660631 / 442 (33.5) / (39.6) / (25.7) / (30.6) / 45 (31.1) / 368 (33.2)
AJ441088 / 442 (33.7) / (39.6) / (26.7) / (30.6) / 45 (31.1) / 368 (33.4)
Podocarpus costalis C. Presl /

AY678114

/ 450 (32.4) / (39.6) / (23) / (30.6) / 45 (33.3) / 321 (34.9)
Podocarpus henkelii
Stapf ex Dallim. & Jacks / AY678113 / 422 (34.4) / (41.7) / (26.7) / (31.5) / 45 (31.1) / 368 (31.3)
Podocarpus macrophyllus
var. maki Siebold & Zuccarini / AY678111 / 442 (33.7) / (41.7) / (24.3) / (31.8) / 45 (33.3) / 369 (35)

aAll unmarked vouchers are deposited in Herbarium, Lushan Botanical Garden, Chinese Academy of Sciences, Jiangxi, China (LUS)

bAccession numbers of new sequences are given in boldface

*Incomplete sequence