SupplementaryTable4 Annotation of candidate genes for fatty acid biosynthesis in the castor bean genome

Gene name / Contig / CDS length / Exon/intron coordinates
ACCase / 29908.m005991 / 6,723 / 1–351, 835–1041, 1121–1282, 1380–1472, 1573–1668, 1814–1987, 2420–2512, 2607–2789, 2878–2928, 3025–3063, 4045–4167, 4287–4403, 4543–4617, 4697–4753, 4896–4985, 5155–5400, 5491–5679, 5856–5966, 6052–6138, 6230–6406, 7030–7107, 7216–7338, 7623–7892, 7980–8318, 8606–8842, 8956–9306, 9393–9605, 10099–10275, 10430–12583, 12671–12715
Alpha-carboxyl transferase / 27798.m000585 / 2,355 / 764–1915,2100–2177,2425–2547, 2627–2677,3258–3410, 3491–3604, 3741–3899, 4034–4141, 5006–5080, 5187–5522
Beta-carboxyl transferase / 28890.m000006 / 528 / 115–642
Biotin carboxylase / 30185.m000954 / 1,935 / 193–246, 332–679, 792–932, 2133–2231, 2942–2998, 4560–4631, 4995–5084, 5689–5814, 6091–6150, 7302–7487, 7584–7676, 7771–7851, 8689–8793, 9588–9662, 9928–9972, 10031–10150, 10396–10569
Biotin carrier / 29630.m000809
29929.m004560 / 780
924 / 465–578,1165–1218,1316–1465, 1563–1862, 2470–2541, 2692–2757, 3013–3033
162–308,1702–2001,2083–2418, 2521–2592, 2990–3055
Malonyl-CoAtransacylase / 30113.m001448 / 987 / 4630–4698, 4940–5119, 5359–5406, 5510–5647, 5739–5819, 5916–6092, 6166–6252, 6365–6418, 6483–6626
Beta-ketoacylACPsynthase I / 29693.m002034 / 1,437 / 63–515, 1394–1825, 2050–2223, 3088–3201, 3308–3409, 3544–3615, 3737–3826
Beta-ketoacylACPsynthase II / 29739.m003711 / 2,013 / 256–609, 1080–1283, 1370–1573, 1744–1854, 1956–2051, 2158–2373, 2857–2925, 3458–3556, 3589–3693,3994–4125,4451–4603, 4681–4761, 5013–5072, 5191–5307
Beta-ketoacylACPsynthase III / 28455.m000368 / 1,233 / 418–597, 2310–2456, 3062–3196, 3899–4003, 4088–4186, 4930–5037, 5124–5345, 5501–5722
3-ketoacylACPdehydrase / 30147.m013777 / 735 / 241–372, 484–537, 1384–1464, 1551–1595, 1668–1718, 1851–1883, 2117–2251, 2406–2498, 2907–2987, 3085–3108
3-ketoacyl-CoAreductase(KAR) / 29929.m004732 / 987 / 438–581, 686–739, 1170–1250, 1334–1378, 1455–1547, 1630–1662, 2088–2222, 2293–2385, 2608–2688, 2791–2823
EnoylACPreductase(ENR) / 27843.m000160
29650.m000277 / 1,083
1,083 / 1019–1294,1604–1654,1965–2072, 2173–2226, 2322–2405, 2491–2538, 3855–3911, 3972–4058, 4159–4215, 4453–4548, 4810–4959
1–279, 989–1096, 1194–1247, 1336–1419, 3871–3945, 4020–4079, 4225–4272, 4364–4414, 4488–4544, 4687–4782, 4879–5031
HydroxyacylACPdehydrase(HD) / 30200.m000354 / 534 / 52–306, 394–450, 598–741, 1175–1246
Plastidial 1 acylglycerol phosphate acyltransferase / 29687.m000572 / 987 / 278–349, 641–817, 919–1323, 1447–1548, 1960–2175
Plastidialglycerol phosphate acyltransferase / 30068.m002660 / 1,236 / 1–303, 798–893, 1685–1771, 1965–2048, 2959–3015, 4623–4724, 4818–4877, 4957–5064, 6553–6630, 8337–8456, 8560–8688
Monoglactoacsyldiacylglyceroldesaturase(FAD 5) / 29841.m002863 / 1,161 / 1–573, 726–866, 958–1098, 1816–1920, 2019–2216
StearoylACPdesaturase / 27985.m000877
28470.m000428
29929.m004515
30020.m000203 / 1,176
336
960
1,191 / 68–676, 772–1338
1–99, 331–564
1–84, 174–677, 836–1204
27–149, 3445–3948, 4628–5188
Oleatedesaturase(FAD 6) / 29696.m000105 / 825 / 149–202, 769–912, 980–1063, 1664–1807, 3287–3403, 3901–4014, 4288–4449
Linoleatedesaturase(FAD 7) / 28176.m000273
29681.m001360
29814.m000719 / 1,359
1,131
1,383 / 1–519, 627–713, 803–868, 981–1073, 1162–1347, 1453–1533, 1694–1831, 1966–2148
260–544, 633–719, 822–881, 977–1069, 1196–1381, 1469–1549, 1674–1811, 1884–2078
345–878, 1073–1159, 1286–1351, 1460–1552, 1635–1820, 2041–2121, 2214–2351, 2447–2638
Linoleatedesaturase(FAD 8) / 28176.m000273
29681.m001360
29814.m000719 / 1,359
1,131
1,383 / 1–519, 627–713, 803–868, 981–1073, 1162–1347, 1453–1533, 1694–1831, 1966–2148
260–544, 633–719, 822–881, 977–1069, 1196–1381, 1469–1549, 1674–1811, 1884–2078
345–878, 1073–1159, 1286–1351, 1460–1552, 1635–1820, 2041–2121, 2214–2351, 2447–2638
ER-oleatedesaturase(FAD 2) / 28035.m000362 / 1,164 / 2529–3692
ER-linoleatedesaturase(FAD 3) / 29681.m001360 / 1,131 / 260–544, 633–719, 822–881, 977–1069, 1196–1381, 1469–1549, 1674–1811, 1884–2078
AcylACPthioesterase(FatA) / 30217.m000262 / 1,269 / 64–336, 988–1119, 1214–1324, 1686–1778, 2550–2705, 3143–3286, 3374–3442, 3523–3801
PalmitoylACPthioesterase(FatB) / 29842.m003515
29848.m004677 / 753
1,260 / 1306–1806, 1928–2059, 3016–3126, 3218–3388, 3472–3540, 4684–4,53
1306–1806, 1928–2059, 3016–3126, 3218–3388, 3472–3540, 4684–4953
Diacylglycerolacyltranferase(DGAT 1) / 29912.m005373 / 1,830 / 237–614, 934–1014, 1145–1216, 1307–1381, 1504–1569, 2002–2124, 2446–2541, 3174–3275, 3376–3510, 4017–4097, 4922–4984, 5953–6240, 6322–6363, 6916–6978, 7131–7184, 7425–7523
Diacylglycerolacyltranferase(DGAT 2) / 29682.m000581 / 768 / 413–460, 591–674, 1156–1260, 1357–1512, 2244–2330, 2589–2684, 2893–2979, 3052–3147
Lysophosphosphatidic acid acyltransferase(LPAAT) / 27810.m000646
29851.m002448
30169.m006433
30170.m013990
29736.m002070
29822.m003441
29969.m000267
30174.m008615 / 1,188
1,050
852
738
1,515
1,539
594
1,506 / 267–347, 585–707, 1628–1666, 1802–1873, 2111–2170, 2581–2658, 2809–967, 4289–4414, 5324–5416, 5499–5585, 5707–5973
1–570, 727–948, 1120–1155, 1362–1577
1–81,389–511, 1013–1051, 1190–1261, 1744–1803, 2034–2111, 2198–2356, 2667–2792, 3274–3366, 3456–3473
1–351, 532–660, 1556–1807
1–615, 806–1705
1–639, 1799–2698
62–655
47–355, 508–819, 2296–3177
Diacylglycerolcholinephosphotransferase / 30138.m003845 / 1,449 / 617–763,1163–1201,1398–1448, 1554–1631, 1742–1816, 1916–1936, 2014–2112, 2,08–2400, 2563–2628, 3465–3530, 4049–4111, 4192–4230, 4,519–4563, 4748–4867, 5466–5513, 5955–6017, 6491–6556, 6878–6949, 7052–7105, 7463–7504, 7712–7783
Digalactosyldiacyglycerolsynthase(DGD1) / 28726.m000069 / 2,538 / 1–639, 1330–1359, 2004–2042, 2222–2311, 2378–2473, 3017–3499, 3607–3873, 4054–4401, 4794–5327
ER phosphatidatephosphatase / 29586.m000620
29660.m000760
29660.m000759
29660.m000759 / 954
564
930
945 / 1–216, 317–403, 519–626, 698–787, 1002–1187, 1306–1362, 2631–2828.
6754–6780, 7063–7155, 7219–7404, 7495–7551, 8141–8332
1–60,671–895,1002–1088,1182–1289, 1420–1509, 1715–1900, 2200–2256, 2378–2482
1–255, 374–460, 571–678, 801–893, 1087–1260, 1385–1441, 1606–1764
Caleosin / 29673.m000932
0008.m000820 / 597
702 / 1–39, 128–223, 323–406, 2037–2129, 2363–2485, 2598–2747
1–105,550–696,796–879,1264–1356, 1461–1583, 1674–1811
Oleosin / 29794.m003372
30147.m013891
30147.m014333 / 564
489
495 / 1–699
1–426
87–581