Supplementary Table 1
The frequencies of haplogroups K*, N-O in the studied populations (%)
K* / NO* / N* / N1 / N2 / N3 / ORegion and Population / N / M9 / M214 / M231 / M128 / P43 / M178 / M175
LLY22g / TAT
Europe
Andalusians1 / 29 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Basque French 1 / 22 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Basque Spanish 1 / 45 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Catalans 1 / 24 / 0 / 0 / 0 / 0 / 0 / 0 / 0
French 1 / 23 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Italians (Central-north)1 / 50 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Sardinians1 / 77 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Croats A,2 / 109 / 0.9 / 0 / 0 / 0 / 0 / 0 / 0
Albanians 1 / 51 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Greeks 1 / 76 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Makedonians1 / 20 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Dutch 1 / 27 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Germans 1 / 16 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Danes 3 / 194 / 0 / 0 / 0 / 0 / 0 / 0.5 / 0
Icelanders4 / 181 / 0 / 0 / 0 / 0 / 0 / 0.6 / 0
Norwegians4 / 112 / 0 / 0 / 0 / 0 / 0 / 2.7 / 0
Norwegians5 / 72 / 1.4 / nd / nd / nd / nd / 6.9 / nd
Norwegians 6 / 300 / nd / nd / nd / nd / nd / 5.7 / nd
SwedesA,7 / 141 / 4.6 / 0 / 0 / 0 / 0 / 2.8 / 0
Swedes4 / 110 / 0.9 / nd / nd / nd / nd / 7.3 / nd
Saami8 / 24 / 0 / 0 / 0 / 0 / 0 / 41.7 / 0
Finns 9 / 536 / 0.2 / nd / nd / nd / 0.4 / 58.2 / nd
Finns 10 / 127 / 0.8 / nd / nd / nd / nd / 77.0 / nd
Estonians A,7 / 209 / 0 / 0 / 0 / 0 / 0 / 30.6 / 0
LatviansA,7 / 86 / 0 / 0 / 0 / 0 / 0 / 41.9 / 0
Lithuanians 11 / 196 / 0.5 / nd / nd / nd / nd / 36.7 / nd
Karelians A / 140 / 0 / 0 / 0 / 0 / 0.7 / 36.4 / 0
VepsasA / 39 / 0 / 0 / 0 / 0 / 17.9 / 38.4 / 0
KomisA,7 / 94 / 4.2 / 0 / 0 / 1.1 / 12.8 / 22.3 / 0
Mordvin A,7 / 83 / 1.2 / 0 / 0 / 0 / 2.4 / 16.9 / 0
Udmurts A,7 / 87 / 0 / 0 / 0 / 0 / 28.7 / 56.3 / 0
MarisA / 51 / 0 / 0 / 0 / 0 / 15.7 / 25.5 / 0
Chuvashes A,7 / 79 / 1.2 / 0 / 0 / 0 / 10.1 / 17.7 / 0
Komis 12 / 28 / 0 / 0 / 0 / 0 / 35.7 / 50.0 / 0
Tatars13 / 79 / 0 / 0 / 0 / 0 / 0 / 25.4 / 0
Hungarians A,7 / 113 / 0 / 0 / 0 / 0 / 0 / 0.9 / 0
SlovaksA / 263 / 0 / 0 / 0 / 0 / 0 / 3.0 / 0
Poles A,7 / 93 / 0 / 0 / 0 / 0 / 0 / 4.3 / 0
Ukrainians 13 / 93 / 0 / 0 / 0 / 0 / 0 / 9.7 / 0
Ukrainians A / 233 / 0 / 0 / 0 / 0 / 0 / 6.0 / 0
Russians 13 / 264 / 0 / 0 / 0 / 0 / 0.4 / 13.3 / 0
continued
Supplementary Table 1 (continued)
Byelorussians13 / 68 / 0 / 0 / 0 / 0 / 0 / 8.2 / 0
Caucasus
Caucasus (pooled) A* / 1404 / 0 / 0 / 0 / 0 / 0 / 0.2 / 0
Georgians 1 / 63 / 1.6 / nd / nd / nd / nd / 0 / nd
Siberia, Central &Inner Asia
Nenets Forest 12 / 89 / 0 / 0 / 1.1 / 0 / 44.9 / 51.7 / 1.1
Nenets Tundra12 / 59 / 0 / 0 / 0 / 0 / 74.6 / 23.7 / 0
Khants A / 57 / 0 / 0 / 0 / 0 / 52.0 / 26.0 / 0
Khants 12 / 47 / 0 / 0 / 0 / 0 / 38.3 / 38.3 / 0
Khants 13 / 10 / 0 / 0 / 0 / 0 / 16.7 / 58.3 / 0
Nganasans 12 / 38 / 0 / 0 / 0 / 0 / 91.1 / 2.6 / 0
Selkups 12 / 131 / 0 / 0 / 0 / 0 / 6.9 / 0 / 0
Dolgans12 / 67 / 0 / 0 / 0 / 0 / 11.9 / 22.4 / 4.5
Evenks Western 12 / 18 / 0 / 0 / 0 / 0 / 16.7 / 0 / 0
Evenks Eastern 12 / 78 / 0 / 0 / 0 / 0 / 0 / 20.5 / 0
Yukagirs 12 / 11 / 0 / 0 / 0 / 0 / 0 / 27.3 / 0
Tuvinians 13 / 311 / 2.9 / nd / 1.6 / 0 / 21.9 / 16.0 / 8.6
Altay North 13 / 50 / 8.0 / nd / 0 / 0 / 4.0 / 6.0 / 4.0
Altay South 13 / 93 / 1.1 / nd / 5.3 / 0 / 4.3 / 2.1 / 7.5
Altaians 12,14 / 98 / 0 / 0 / 1.0 / 0 / 2.0 / 1.0 / 1.0
ShoriansA / 23 / 0 / 0 / 8.7 / 0 / 8.7 / 56.5 / 0
Khakas A / 181 / 1.6 / 0 / 2.8 / 0.6 / 17.1 / 28.2 / 1.1
Yakuts (pooled from 14 districts) A / 215 / 0 / 0 / 0 / 0 / 4.1 / 81.9 / 0
Yakuts 13 / 121 / 0 / 0 / 0.8 / 0 / 2.4 / 89.3 / 0
Yakuts 12 / 35 / 0 / 0 / 0 / 0 / 0 / 94.3 / 0
Koryaks 13 / 36 / 0 / 0 / 0 / 0 / 0 / 22.2 / 0
Koryaks 12 / 12 / 0 / 0 / 0 / 0 / 0 / 33.3 / 8.3
Chukchi13 / 56 / 0 / 0 / 0 / 0 / 0 / 53.6 / 0
Eskimos13 / 31 / 0 / 0 / 0 / 0 / 12.8 / 0 / 3.9
Eskimos 12 / 22 / 0 / 0 / 0 / 0 / 0 / 54.5 / 0
Evenks13 / 21 / 3.2 / nd / 0 / 0 / 0 / 35.5 / 3.2
Evenks 12,14 / 95 / 0 / 0 / 0 / 0 / 2.1 / 16.8 / 0
Kets13 / 12 / 4.8 / nd / 0 / 0 / 0 / 0 / 4.8
Kets12 / 48 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Nihvkis 13 / 55 / 0 / 0 / 0 / 0 / 0 / 0 / 20
Buryats 12,14 / 81 / 0 / 0 / 0 / 0 / 2.5 / 28.4 / 2.5
Buryats 13 / 66 / 3.3 / nd / 0 / 0 / 0 / 51.5 / 1.5
Evens12,14 / 31 / 0 / 0 / 0 / 0 / 0 / 12.9 / 0
Oroqens 12,14 / 22 / 0 / 0 / 0 / 0 / 0 / 4.5 / 4.5
Koreans 14 / 75 / 0 / 0 / 1.3 / 1.3 / 0 / 0 / 80.0
Koreans South A,15 / 25 / 0 / 0 / 8 / 0 / 0 / 0 / 64.0
NorthernHan 12,14 / 44 / 0 / 2.3 / 6.8 / 2.3 / 0 / 0 / 72.7
Manchus 12,14 / 52 / 0 / 0 / 3.8 / 1.9 / 0 / 0 / 57.7
Manchurian Evenks 12,14 / 41 / 0 / 0 / 2.4 / 0 / 2.4 / 0 / 36.5
Uzbeks 12 / 54 / 1.8 / nd / 0 / 1.8 / 1.8 / 1.8 / 3.6
Uzbeks 13 / 78 / 4.2 / nd / 0 / 0 / 0 / 8.3 / 8.4
Kazakhs12 / 30 / 0 / 0 / 0 / 0 / 0 / 10.0 / 10.0
Kazakhs 13 / 55 / 10.9 / nd / 0 / 0 / 0 / 5.4 / 32.7
Kazakhs (pooled from 3 locations) A / 185 / 14.6 / 0 / 0 / 8.1 / 1.1 / 3.2 / 4.9
continued
Supplementary Table 1 (continued)
Kirghyz 12 / 13 / 0 / 0 / 0 / 0 / 0 / 0 / 30.8
Kirghiz 13 / 24 / 2.5 / nd / 0 / 0 / 0 / 10.3 / 1.3
Tadziks 13 / 24 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Dungans13 / 16 / 0 / 0 / 0 / 0 / 0 / 0 / 6.2
Uygurs 12,14 / 67 / 0 / 0 / 3.0 / 0 / 3 / 0 / 13.5
Mongolians 12,14 / 149 / 0 / 0.7 / 0 / 0 / 6.0 / 2.0 / 25.5
Tibetans 14 / 105 / 0 / 0 / 2.9 / 0 / 0 / 0 / 36.3
Near East, South Asia
TurksA,16 / 523 / 0 / 0 / 0.2 / 0 / 2.7 / 1.0 / 0.2
Iranians A / 82 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Pakistani 17 / 176 / 0.6 / nd / 0 / 0 / 0 / 0 / 2.3
Indians 14 / 405 / 0 / 0 / 0 / 0 / 0 / 0 / 9.8
Indians (cast populations) 17 / 357 / 0 / 0 / 0 / 0 / 0 / 0 / 1.1
Indians (Tribal populations) 17 / 352 / 0 / 0 / 0 / 0 / 0 / 0 / 46.3
Sri Lanka 14 / 91 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Bengalese West 18 / 31 / 0 / 0 / 0 / 0 / 0 / 0 / 3
Japan
Japan Ainu 14 / 4 / 0 / 0 / 0 / 0 / 0 / 0 / 0
Japan Aomori 14 / 26 / 0 / 0 / 7.7 / 0 / 0 / 0 / 46
Japan Okinawa14 / 45 / 0 / 0 / 0 / 0 / 0 / 0 / 37.8
Japan Shizuoka 14 / 61 / 0 / 0 / 1.6 / 0 / 0 / 0 / 55.7
Japan Tokushima 14 / 70 / 0 / 5.7 / 0 / 0 / 0 / 1.4 / 54.4
Japan Kyushu 14 / 53 / 0 / 3.8 / 0 / 0 / 0 / 0 / 62.3
Southeast Asia
Taiwanese (Han and Hakka)14 / 84 / 0 / 0 / 3.6 / 0 / 0 / 2.4 / 84.5
Taiwan ChineseA,15 / 26 / 0 / 0 / 0 / 0 / 0 / 3.8 / 92.3
Taiwanese (Aboriginal)14 / 48 / 0 / 0 / 0 / 0 / 0 / 0 / 98
Taiwan Aborigines A,15 / 43 / 0 / 0 / 0 / 0 / 0 / 0 / 95.4
Southern Han14 / 40 / 0 / 2.5 / 15 / 0 / 0 / 0 / 77.5
China Southern Han Chinese A,15 / 36 / 0 / 0 / 11.1 / 0 / 0 / 0 / 83.3
South Chinese 17 / 78 / 0 / 0 / 10.2 / 0 / 0 / 0 / 67.8
Cambodians 17 / 6 / 0 / 0 / 16.7 / 0 / 0 / 0 / 66.7
North Chinese 17 / 50 / 0 / 0 / 4.0 / 0 / 0 / 10 / 30
Tujia 14 / 49 / 0 / 0 / 4.1 / 0 / 0 / 0 / 65.3
Yizu14 / 43 / 0 / 2.3 / 30.2 / 0 / 0 / 0 / 44.1
Miao 14 / 58 / 0 / 0 / 0 / 0 / 0 / 0 / 86.1
Yao 14 / 60 / 0 / 0 / 0 / 0 / 0 / 0 / 78.4
Zhuang 14 / 20 / 0 / 0 / 0 / 0 / 0 / 0 / 100
She 14 / 51 / 0 / 0 / 0 / 0 / 0 / 0 / 100
Vietnam14 / 70 / 0 / 0 / 2.9 / 0 / 0 / 0 / 78.5
Vietnam A,15 / 10 / 0 / 0 / 0 / 0 / 0 / 0 / 91.0
Malay14 / 32 / 6.3 / 3.1 / 0 / 0 / 0 / 0 / 72
MalaysiaA,15 / 18 / 11.1 / 0 / 0 / 0 / 0 / 0 / 66.7
Philippines14 / 48 / 45.8 / 0 / 0 / 0 / 0 / 0 / 48
PhilippinesA,15 / 39 / 2.6 / 0 / 0 / 0 / 0 / 0 / 82.1
JavaA,15 / 53 / 1.9 / 0 / 0 / 0 / 0 / 0 / 88.6
Borneo southernA,15 / 40 / 5.0 / 0 / 2.5 / 0 / 0 / 2.5 / 75.0
Moluccas A,15 / 34 / 17.6 / 0 / 0 / 0 / 0 / 0 / 17.7
Nusa Tenggara A,15 / 31 / 32.3 / 0 / 0 / 0 / 0 / 0 / 25.8
continued
Supplementary table 1 (continued)
SumatraA / 57 / 3.5 / 0 / 0 / 0 / 0 / 0 / 61.4
Indonesians East14 / 55 / 20.0 / 0 / 0 / 0 / 0 / 0 / 21.8
Indonesians West14 / 25 / 4.0 / 0 / 0 / 0 / 0 / 0 / 84.0
Oceania
Australian Aborigines14 / 33 / 42.4 / 0 / 0 / 0 / 0 / 0 / 0
Australian Aborigenes A,15 / 95 / 35.3 / 0 / 0 / 0 / 0 / 0 / 1.1
Papuans NG14 / 46 / 54.3 / 0 / 0 / 0 / 0 / 0 / 6.5
Papua GN, West NG mainland A,15 / 245 / 6.9 / 0 / 0 / 0 / 0 / 0 / 2.5
Tolai New Britain A,15 / 16 / 37.5 / 0 / 0 / 0 / 0 / 0 / 6.3
Trobirand Islands A,15 / 53 / 22.6 / 0 / 0 / 0 / 0 / 0 / 37.7
Melanesians14 / 53 / 24.5 / 0 / 0 / 0 / 0 / 0 / 9.5
Micronesians 14 / 17 / 35.3 / 0 / 0 / 0 / 0 / 0 / 35.3
Polynesians 14 / 60 / 3.3 / 0 / 0 / 0 / 0 / 0 / 28.3
Cook islandsA,15 / 28 / 3.6 / 0 / 0 / 0 / 0 / 0 / 7.1
FijiA / 107 / 25.2 / 0 / 0.9 / 0 / 0 / 0 / 13.1
N – sample size;
nd – not determined, because of lower phylogenetic resolution level of study;
Data from:
A present study,
A*Caucasus pooled – Avars, Chamalals, Bagvalals, Darginians, Lezgis, Tabassarans, Andis, Adyghes, Abazas, Karachays, Kumyks, Megrels, Agkhazes, Balkars, Osetins, Tats, Kurds, Kabardinians, Armenians
1. Semino O, Passarino G, Oefner PJ et al: The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: A Y chromosome perspective. Science 2000; 290:1155-1159.
2. Barac L, Pericic M, Klaric IM et al: Y chromosomal heritage of Croatian population and its island isolates. Eur J Hum Genet 2003; 11:535-542.
3. Sanchez JJ, Borsting C, Hallenberg C, Buchard A, Hernandez A, Morling N: Multiplex PCR and minisequencing of SNPs - a model with 35 Y chromosome SNPs. Forensic Sci Int 2003;137:74-184.
4. Helgason A, Sigureth ardottir S, Nicholson J et al: Estimating Scandinavian and Gaelic ancestry in the male settlers of Iceland. Am J Hum Genet 2000; 67: 697-717.
5. Passarino G, Cavalleri GL, Lin AA, Cavalli-Sforza LL, Borresen-Dale AL, Underhill PA: Different genetic components in the Norwegian population revealed by the analysis of mtDNA and Y chromosome polymorphisms. Eur J Hum Genet 2002; 10: 521-529.
6. Dupuy BM, Andreassen R, Flones AG et al: Y-chromosome variation in a Norwegian population sample. Forensic Sci Int 2001; 117: 163-173.
7. Tambets K, Rootsi S, Kivisild T et al: The western and eastern roots of the Saami - the story of genetic “outliers” told by mtDNA and Y-chromosome. Am J Hum Genet 2004; 74: 661:682.
8. Dupuy BM, Stenersen M, Egeland T, Olaisen B: Y-chromosomal microsatellite mutation rates: differences in mutation rate between and within loci. Hum Mutat. 2004; 23:117-124.
9. Lappalainen T, Koivumki S, Salmela E et al.: Regional differences among the Finns: A Y-chromosomal perspective. Gene 2006 (in press).
10. Raitio M, Lindroos K, Laukkanen M et al: Y-chromosomal SNPs in Finno-Ugric-speaking populations analyzed by minisequencing on microarrays. Genome Res 2001; 11: 471-482.
11. Kasperaviciute D, Kucinskas V, Stoneking M: Y chromosome and mitochondrial DNA variation in Lithuanians. Ann Hum Genet 2004; 68: 438-452.
12.Karafet TM, Osipova LP, Gubina MA, Posukh OL, Zegura SL, Hammer MF: High levels of Y-chromosome differentiation among native Siberian populations and the genetic signature of a boreal hunter-gatherer way of life. Hum Biol 2002; 74: 761-789.
13. Kharkov VN: Structure of Y-chromosomal lineages in Siberian populations. PhD thesis (in Russian). Tomsk, Research Institute of Medical Genetics at the Tomsk Scientific Center, Siberian Division of RussianAcademy of Medical Sciences, 2005.
14. Hammer MF, Karafet TM, Park H et al: Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. J Hum Genet 2006; 51: 47-58.
15. Kayser M, Brauer S, Weiss G et al: Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea. Am J Hum Genet 2003; 72: 281-302.
16. Cinnioġlu C, KingR, KivisildT et al: Excavating Y-chromosome haplotype strata in Anatolia. Hum Genet 2004; 114:127-148.
17. Sengupta S, Zhivotovsky LA, King R et al: Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of central asian pastoralists. Am J Hum Gen 2006; 78: 202-221.
18. Kivisild T, Rootsi S, Metspalu M et al: The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations. Am J Hum Genet 2003; 72: 313-332.