Supporting Table 1. Genes That Are Up-Regulated in Type I Cells Relative to Type II Cells

Supporting Table 1. Genes that are up-regulated in type I cells relative to type II cells (SAM analysis).

Position / Gene ID / Score(d) / Numerator(r) / Denominator(s+s0) / Fold Change / q-value(%)
1 / DBNL / -1.9976 / -1.7757 / 0.8889 / 3.4240 / 12.5549
2 / ITGA3 / -4.2901 / -1.6614 / 0.3873 / 3.1633 / 0.0000
3 / TPM1 / -4.2896 / -1.5974 / 0.3724 / 3.0260 / 0.0000
4 / CALD1 / -3.2468 / -1.5885 / 0.4893 / 3.0073 / 1.6806
5 / MATN2 / -2.8880 / -1.5742 / 0.5451 / 2.9776 / 3.1843
6 / COL4A1 / -3.4797 / -1.5664 / 0.4501 / 2.9616 / 0.0000
7 / VCAN / -2.7982 / -1.4832 / 0.5300 / 2.7956 / 3.2598
8 / CYR61 / -3.4712 / -1.4759 / 0.4252 / 2.7816 / 0.0000
9 / AKR1B1 / -2.7017 / -1.4361 / 0.5315 / 2.7058 / 3.7194
10 / RAI14 / -4.0135 / -1.3933 / 0.3471 / 2.6267 / 0.0000
11 / PLCB4 / -3.4309 / -1.3867 / 0.4042 / 2.6149 / 0.9454
12 / MYLK / -4.1744 / -1.3725 / 0.3288 / 2.5892 / 0.0000
13 / EFEMP1 / -1.9480 / -1.3540 / 0.6951 / 2.5562 / 13.5674
14 / CAV2 / -2.3483 / -1.3446 / 0.5726 / 2.5396 / 6.6316
15 / DNAJA3 / -2.2914 / -1.3417 / 0.5856 / 2.5346 / 7.7537
16 / SERPINE1 / -2.8362 / -1.3180 / 0.4647 / 2.4933 / 3.2598
17 / CNN3 / -3.7790 / -1.3170 / 0.3485 / 2.4916 / 0.0000
18 / GJA1 / -2.2471 / -1.2906 / 0.5743 / 2.4463 / 7.7537
19 / IGFBP5 / -2.5825 / -1.2718 / 0.4925 / 2.4147 / 4.3465
20 / AMPD3 / -2.2125 / -1.2702 / 0.5741 / 2.4119 / 8.7431
21 / ZCCHC14 / -1.8506 / -1.2591 / 0.6804 / 2.3934 / 15.1716
22 / HMGN2 / -3.4249 / -1.2443 / 0.3633 / 2.3691 / 0.9454
23 / FAM13A / -2.7911 / -1.2270 / 0.4396 / 2.3409 / 3.2598
24 / PLK2 / -4.1107 / -1.2258 / 0.2982 / 2.3388 / 0.0000
25 / FGF2 / -2.8976 / -1.2223 / 0.4218 / 2.3331 / 3.1843
26 / NUDT1 / -3.3436 / -1.2122 / 0.3625 / 2.3169 / 1.6806
27 / NNMT / -2.1846 / -1.2118 / 0.5547 / 2.3163 / 9.2712
28 / UBL4A / -2.4814 / -1.1983 / 0.4829 / 2.2946 / 5.4020
29 / PMEPA1 / -3.7790 / -1.1917 / 0.3154 / 2.2843 / 0.0000
30 / LAPTM4B / -2.4850 / -1.1865 / 0.4775 / 2.2760 / 5.4020
31 / FGFR1 / -3.7311 / -1.1725 / 0.3143 / 2.2540 / 0.0000
32 / ITGB1 / -2.7237 / -1.1663 / 0.4282 / 2.2443 / 3.7194
33 / ZMAT1 / -2.0508 / -1.1564 / 0.5639 / 2.2289 / 11.7240
34 / VCL / -3.4107 / -1.1537 / 0.3383 / 2.2249 / 0.9454
35 / CAV1 / -2.5187 / -1.1526 / 0.4576 / 2.2231 / 4.9592
36 / VCAM1 / -2.3617 / -1.1381 / 0.4819 / 2.2009 / 6.6316
37 / RAB31 / -2.0660 / -1.1287 / 0.5463 / 2.1866 / 10.7004
38 / HSPB8 / -2.6011 / -1.1221 / 0.4314 / 2.1767 / 4.3465
39 / ADAM9 / -2.7146 / -1.1216 / 0.4132 / 2.1759 / 3.7194
40 / FHL2 / -3.1987 / -1.1183 / 0.3496 / 2.1710 / 1.6806
41 / SDC3 / -2.0546 / -1.0871 / 0.5291 / 2.1245 / 11.7240
42 / WWTR1 / -2.6045 / -1.0829 / 0.4158 / 2.1182 / 4.3465
43 / PEG10 / -2.8289 / -1.0823 / 0.3826 / 2.1175 / 3.2598
44 / GNGT1 / -1.9505 / -1.0719 / 0.5496 / 2.1022 / 13.5674
45 / SPARC / -2.0279 / -1.0618 / 0.5236 / 2.0876 / 11.7240
46 / PLOD2 / -2.1169 / -1.0509 / 0.4964 / 2.0718 / 10.2954
47 / C17orf91 / -3.5460 / -1.0451 / 0.2947 / 2.0635 / 0.0000
48 / MAP1B / -3.0830 / -1.0415 / 0.3378 / 2.0584 / 2.2576
49 / FBXL7 / -2.4495 / -1.0292 / 0.4202 / 2.0410 / 5.4020
50 / TGFB2 / -2.4962 / -1.0258 / 0.4109 / 2.0360 / 5.4020
51 / ZNF687 / -2.8402 / -1.0240 / 0.3605 / 2.0336 / 3.1843
52 / DPYSL3 / -2.4877 / -1.0227 / 0.4111 / 2.0316 / 5.4020
53 / LGALS3BP / -1.9276 / -1.0174 / 0.5278 / 2.0243 / 13.5674
54 / CDH2 / -2.2577 / -1.0110 / 0.4478 / 2.0153 / 7.7537
55 / NIT2 / -2.7077 / -1.0095 / 0.3728 / 2.0132 / 3.7194
56 / DHCR24 / -2.4249 / -1.0084 / 0.4159 / 2.0117 / 6.2015
57 / PPME1 / -3.0210 / -1.0067 / 0.3332 / 2.0093 / 2.6260
58 / NDUFA5 / -2.9214 / -0.9963 / 0.3410 / 1.9949 / 2.7336
59 / TRIM3 / -3.6031 / -0.9953 / 0.2762 / 1.9935 / 0.0000
60 / UGT2B7 / -2.7263 / -0.9912 / 0.3636 / 1.9879 / 3.7194
61 / TFPI2 / -2.1132 / -0.9857 / 0.4664 / 1.9802 / 10.2954
62 / TFPI / -2.1935 / -0.9853 / 0.4492 / 1.9797 / 9.2712
63 / PPP3CC / -2.2956 / -0.9839 / 0.4286 / 1.9778 / 7.7537
64 / LEPR / -2.8029 / -0.9798 / 0.3496 / 1.9723 / 3.2598
65 / LAMB1 / -2.5218 / -0.9758 / 0.3869 / 1.9667 / 4.9592
66 / TNFAIP2 / -3.4199 / -0.9634 / 0.2817 / 1.9499 / 0.9454
67 / DNER / -2.3183 / -0.9580 / 0.4132 / 1.9426 / 7.2769
68 / ANXA4 / -2.6713 / -0.9464 / 0.3543 / 1.9271 / 4.3465
69 / PRSS23 / -2.1298 / -0.9453 / 0.4439 / 1.9256 / 10.2954
70 / PROCR / -2.4942 / -0.9427 / 0.3779 / 1.9221 / 5.4020
71 / NCDN / -2.0627 / -0.9406 / 0.4560 / 1.9193 / 10.7004
72 / SDPR / -2.3247 / -0.9386 / 0.4037 / 1.9166 / 7.2769
73 / IGFBP7 / -2.3665 / -0.9321 / 0.3939 / 1.9081 / 6.6316
74 / ATP1B1 / -2.4921 / -0.9279 / 0.3723 / 1.9025 / 5.4020
75 / SCHIP1 / -3.7064 / -0.9127 / 0.2462 / 1.8825 / 0.0000
76 / PAPSS2 / -2.3874 / -0.9110 / 0.3816 / 1.8803 / 6.2015
77 / FLJ31356 / -3.1735 / -0.9102 / 0.2868 / 1.8793 / 1.8597
78 / FLNA / -2.4448 / -0.9027 / 0.3692 / 1.8696 / 5.4020
79 / DCBLD2 / -2.0069 / -0.9003 / 0.4486 / 1.8665 / 12.5549
80 / PTTG1IP / -3.6424 / -0.8981 / 0.2466 / 1.8636 / 0.0000
81 / ATP5G1 / -2.3578 / -0.8956 / 0.3799 / 1.8604 / 6.6316
82 / SYT6 / -2.3015 / -0.8948 / 0.3888 / 1.8594 / 7.2769
83 / GLIPR1 / -2.6316 / -0.8879 / 0.3374 / 1.8505 / 4.3465
84 / IL32 / -2.2242 / -0.8817 / 0.3964 / 1.8426 / 8.7431
85 / PEA15 / -3.2027 / -0.8767 / 0.2737 / 1.8362 / 1.6806
86 / CSF1 / -3.1758 / -0.8733 / 0.2750 / 1.8318 / 1.8597
87 / DKK3 / -4.6004 / -0.8717 / 0.1895 / 1.8298 / 0.0000
88 / TRPV1 / -2.8889 / -0.8706 / 0.3014 / 1.8284 / 3.1843
89 / C6orf108 / -2.6984 / -0.8635 / 0.3200 / 1.8194 / 3.7194
90 / GJB1 / -1.9523 / -0.8625 / 0.4418 / 1.8182 / 13.5674
91 / MT2A / -1.9223 / -0.8618 / 0.4483 / 1.8173 / 13.5674
92 / TGM2 / -2.1926 / -0.8605 / 0.3925 / 1.8157 / 9.2712
93 / CYP4V2 / -2.2294 / -0.8554 / 0.3837 / 1.8092 / 8.7431
94 / SUSD4 / -2.4992 / -0.8473 / 0.3390 / 1.7991 / 5.4020
95 / TWSG1 / -2.8680 / -0.8444 / 0.2944 / 1.7955 / 3.1843
96 / USP47 / -2.1179 / -0.8441 / 0.3985 / 1.7951 / 10.2954
97 / ANTXR1 / -1.8471 / -0.8439 / 0.4569 / 1.7949 / 15.1716
98 / CRABP1 / -2.1923 / -0.8437 / 0.3849 / 1.7947 / 9.2712
99 / ANXA2 / -2.0345 / -0.8420 / 0.4139 / 1.7926 / 11.7240
100 / KIAA1409 / -2.6930 / -0.8407 / 0.3122 / 1.7909 / 3.7194
101 / ACTB / -4.1718 / -0.8343 / 0.2000 / 1.7830 / 0.0000
102 / CAPN2 / -2.4710 / -0.8333 / 0.3372 / 1.7818 / 5.4020
103 / TARP / -2.3851 / -0.8306 / 0.3482 / 1.7784 / 6.2015
104 / AKT3 / -2.1743 / -0.8300 / 0.3817 / 1.7777 / 9.2712
105 / PFN2 / -2.3681 / -0.8287 / 0.3499 / 1.7760 / 6.6316
106 / S100A16 / -2.1378 / -0.8254 / 0.3861 / 1.7720 / 10.2954
107 / MICAL2 / -2.1998 / -0.8251 / 0.3751 / 1.7716 / 8.7431
108 / UGCG / -2.8981 / -0.8249 / 0.2846 / 1.7714 / 3.1843
109 / ITM2B / -3.5723 / -0.8210 / 0.2298 / 1.7666 / 0.0000
110 / ZDHHC18 / -1.9068 / -0.8128 / 0.4263 / 1.7566 / 14.2037
111 / JUB / -2.8341 / -0.8070 / 0.2847 / 1.7495 / 3.2598
112 / HSPB2 / -2.6281 / -0.8048 / 0.3063 / 1.7470 / 4.3465
113 / FKBP8 / -1.8935 / -0.8017 / 0.4234 / 1.7432 / 14.2037
114 / COL18A1 / -3.4234 / -0.8015 / 0.2341 / 1.7429 / 0.9454
115 / SNTB2 / -1.8551 / -0.7980 / 0.4301 / 1.7386 / 15.1716
116 / BRP44L / -3.7517 / -0.7978 / 0.2126 / 1.7384 / 0.0000
117 / GNAS / -3.3514 / -0.7938 / 0.2369 / 1.7336 / 1.6806
118 / UROS / -2.8081 / -0.7924 / 0.2822 / 1.7319 / 3.2598
119 / ADAMTS1 / -1.9959 / -0.7905 / 0.3961 / 1.7297 / 12.5549
120 / MYH9 / -2.6076 / -0.7879 / 0.3022 / 1.7265 / 4.3465
121 / THBS3 / -2.6326 / -0.7784 / 0.2957 / 1.7152 / 4.3465
122 / IL6ST / -2.9681 / -0.7778 / 0.2621 / 1.7145 / 2.7336
123 / OGFRL1 / -2.6208 / -0.7776 / 0.2967 / 1.7142 / 4.3465
124 / CRYZ / -2.0922 / -0.7759 / 0.3709 / 1.7123 / 10.7004
125 / ANXA5 / -2.2805 / -0.7746 / 0.3396 / 1.7107 / 7.7537
126 / PBX3 / -2.9938 / -0.7646 / 0.2554 / 1.6989 / 2.6260
127 / ALCAM / -1.9057 / -0.7639 / 0.4008 / 1.6980 / 14.2037
128 / ITGA6 / -1.9219 / -0.7635 / 0.3972 / 1.6976 / 13.5674
129 / PXN / -2.6920 / -0.7635 / 0.2836 / 1.6976 / 3.7194
130 / GABARAPL1 / -2.3962 / -0.7586 / 0.3166 / 1.6919 / 6.2015
131 / FAS / -2.9185 / -0.7537 / 0.2583 / 1.6861 / 2.7336
132 / RHOC / -2.3831 / -0.7537 / 0.3163 / 1.6861 / 6.2015
133 / PDS5B / -1.8991 / -0.7532 / 0.3966 / 1.6855 / 14.2037
134 / GNG12 / -2.0328 / -0.7499 / 0.3689 / 1.6817 / 11.7240
135 / COL6A1 / -2.1521 / -0.7492 / 0.3481 / 1.6808 / 9.2712
136 / FDPS / -2.8247 / -0.7483 / 0.2649 / 1.6799 / 3.2598
137 / AVPI1 / -1.8884 / -0.7461 / 0.3951 / 1.6772 / 14.2037
138 / ECE1 / -4.0357 / -0.7388 / 0.1831 / 1.6688 / 0.0000
139 / APOD / -2.8858 / -0.7310 / 0.2533 / 1.6598 / 3.1843
140 / VAPB / -3.3848 / -0.7305 / 0.2158 / 1.6592 / 0.9454
141 / CLDN1 / -1.8196 / -0.7286 / 0.4004 / 1.6570 / 16.1312
142 / REEP5 / -3.2448 / -0.7286 / 0.2245 / 1.6570 / 1.6806
143 / ADRA2C / -3.5591 / -0.7283 / 0.2046 / 1.6567 / 0.0000
144 / THBS1 / -2.3463 / -0.7245 / 0.3088 / 1.6524 / 6.6316
145 / PLEKHO2 / -2.8302 / -0.7211 / 0.2548 / 1.6485 / 3.2598
146 / ADRB2 / -1.8210 / -0.7143 / 0.3923 / 1.6407 / 16.1312
147 / RHEB / -3.1573 / -0.7139 / 0.2261 / 1.6402 / 1.8597
148 / AP2M1 / -1.9232 / -0.7137 / 0.3711 / 1.6400 / 13.5674
149 / PTPRF / -2.8040 / -0.7110 / 0.2536 / 1.6369 / 3.2598
150 / ROR1 / -2.2777 / -0.7058 / 0.3099 / 1.6311 / 7.7537
151 / TNFSF10 / -2.5252 / -0.7054 / 0.2793 / 1.6306 / 4.9592
152 / STMN4 / -3.4031 / -0.7044 / 0.2070 / 1.6295 / 0.9454
153 / PLEKHA5 / -3.6396 / -0.7042 / 0.1935 / 1.6293 / 0.0000
154 / C16orf80 / -1.8346 / -0.7027 / 0.3830 / 1.6276 / 15.1716
155 / RDX / -2.5370 / -0.6984 / 0.2753 / 1.6227 / 4.9592
156 / NRP1 / -2.3159 / -0.6952 / 0.3002 / 1.6191 / 7.2769
157 / WBP5 / -2.3038 / -0.6951 / 0.3017 / 1.6190 / 7.2769
158 / RAB13 / -2.5000 / -0.6911 / 0.2765 / 1.6146 / 5.4020
159 / CS / -2.2517 / -0.6843 / 0.3039 / 1.6069 / 7.7537
160 / SIRPA / -2.5335 / -0.6843 / 0.2701 / 1.6069 / 4.9592
161 / ITGB5 / -2.1416 / -0.6814 / 0.3182 / 1.6037 / 10.2954
162 / LAMC1 / -1.9327 / -0.6811 / 0.3524 / 1.6033 / 13.5674
163 / PHLDB1 / -3.5952 / -0.6751 / 0.1878 / 1.5967 / 0.0000
164 / LARP1B / -2.2534 / -0.6748 / 0.2994 / 1.5963 / 7.7537
165 / HMGCS2 / -3.3279 / -0.6742 / 0.2026 / 1.5957 / 1.6806
166 / TRAM1 / -2.2847 / -0.6677 / 0.2923 / 1.5886 / 7.7537
167 / FAM101B / -2.3788 / -0.6670 / 0.2804 / 1.5878 / 6.6316
168 / MUTED / -2.6584 / -0.6667 / 0.2508 / 1.5874 / 4.3465
169 / PCSK5 / -2.9550 / -0.6638 / 0.2246 / 1.5842 / 2.7336
170 / DKFZP761C1711 / -2.2485 / -0.6631 / 0.2949 / 1.5835 / 7.7537
171 / NEAT1 / -2.4406 / -0.6628 / 0.2716 / 1.5832 / 5.4020
172 / PLLP / -3.1782 / -0.6613 / 0.2081 / 1.5815 / 1.8597
173 / TROAP / -3.4110 / -0.6498 / 0.1905 / 1.5690 / 0.9454
174 / ELOVL5 / -2.4523 / -0.6490 / 0.2647 / 1.5681 / 5.4020
175 / NAV1 / -2.6694 / -0.6481 / 0.2428 / 1.5671 / 4.3465
176 / MT1X / -1.8724 / -0.6449 / 0.3444 / 1.5637 / 14.2037
177 / UBE2A / -3.0416 / -0.6434 / 0.2115 / 1.5620 / 2.2576
178 / DFNA5 / -2.5635 / -0.6401 / 0.2497 / 1.5584 / 4.9592
179 / DKFZP586B0319 / -3.6992 / -0.6400 / 0.1730 / 1.5584 / 0.0000
180 / TBC1D13 / -2.6215 / -0.6394 / 0.2439 / 1.5577 / 4.3465
181 / SLC5A6 / -1.9513 / -0.6381 / 0.3270 / 1.5563 / 13.5674
182 / TJP1 / -2.0466 / -0.6379 / 0.3117 / 1.5560 / 11.7240
183 / BCAR3 / -2.5987 / -0.6378 / 0.2454 / 1.5560 / 4.3465
184 / GNA12 / -3.1792 / -0.6362 / 0.2001 / 1.5542 / 1.8597
185 / SAP130 / -2.4114 / -0.6342 / 0.2630 / 1.5521 / 6.2015
186 / CITED2 / -1.9393 / -0.6326 / 0.3262 / 1.5503 / 13.5674
187 / SPATS2L / -2.0286 / -0.6263 / 0.3087 / 1.5436 / 11.7240
188 / C9orf27 / -3.1552 / -0.6252 / 0.1981 / 1.5424 / 1.8597
189 / PTRF / -2.6539 / -0.6248 / 0.2354 / 1.5420 / 4.3465
190 / PRKAG2 / -2.7028 / -0.6247 / 0.2311 / 1.5419 / 3.7194
191 / MT1F / -1.8408 / -0.6214 / 0.3375 / 1.5383 / 15.1716
192 / CCDC92 / -2.9456 / -0.6179 / 0.2098 / 1.5347 / 2.7336
193 / MYL6 / -2.9971 / -0.6162 / 0.2056 / 1.5329 / 2.6260
194 / RTN4 / -2.5418 / -0.6156 / 0.2422 / 1.5322 / 4.9592
195 / CDKN1A / -2.2777 / -0.6150 / 0.2700 / 1.5316 / 7.7537
196 / CORO1C / -2.2765 / -0.6144 / 0.2699 / 1.5309 / 7.7537
197 / MGLL / -2.6491 / -0.6137 / 0.2317 / 1.5302 / 4.3465
198 / IL6ST / -2.4447 / -0.6133 / 0.2509 / 1.5298 / 5.4020
199 / EIF2AK1 / -2.2798 / -0.6108 / 0.2679 / 1.5271 / 7.7537
200 / EBF1 / -2.0658 / -0.6050 / 0.2929 / 1.5210 / 10.7004
201 / HOXA3 / -2.9795 / -0.6039 / 0.2027 / 1.5199 / 2.6260
202 / SKAP2 / -2.1257 / -0.6023 / 0.2834 / 1.5182 / 10.2954
203 / SV2B / -2.0507 / -0.6008 / 0.2930 / 1.5165 / 11.7240
204 / SDC4 / -2.5722 / -0.6005 / 0.2334 / 1.5162 / 4.9592
205 / MT1B / -1.9143 / -0.5964 / 0.3116 / 1.5120 / 13.5674
206 / SQSTM1 / -1.8913 / -0.5963 / 0.3153 / 1.5118 / 14.2037
207 / FNDC3B / -2.4853 / -0.5956 / 0.2396 / 1.5111 / 5.4020
208 / KDELR2 / -2.0012 / -0.5910 / 0.2953 / 1.5063 / 12.5549
209 / LOC402778 / -2.1317 / -0.5880 / 0.2758 / 1.5031 / 10.2954
210 / AGPAT4 / -3.5450 / -0.5866 / 0.1655 / 1.5017 / 0.0000
211 / GEM / -2.0447 / -0.5857 / 0.2864 / 1.5007 / 11.7240
212 / LASP1 / -3.2006 / -0.5857 / 0.1830 / 1.5007 / 1.6806
213 / PON2 / -1.9720 / -0.5850 / 0.2966 / 1.5000 / 12.5549
214 / CLPB / -3.0292 / -0.5836 / 0.1927 / 1.4986 / 2.6260
215 / TREX1 / -2.5461 / -0.5790 / 0.2274 / 1.4938 / 4.9592
216 / ARMCX2 / -2.5749 / -0.5752 / 0.2234 / 1.4898 / 4.9592
217 / SPEG / -2.5085 / -0.5749 / 0.2292 / 1.4896 / 4.9592
218 / MGP / -1.8390 / -0.5701 / 0.3100 / 1.4846 / 15.1716
219 / FAM49A / -2.2064 / -0.5697 / 0.2582 / 1.4842 / 8.7431
220 / C9orf3 / -2.1695 / -0.5691 / 0.2623 / 1.4836 / 9.2712
221 / HOXA4 / -2.5669 / -0.5690 / 0.2217 / 1.4835 / 4.9592
222 / MAP7D1 / -2.9691 / -0.5688 / 0.1916 / 1.4833 / 2.7336
223 / NEK6 / -2.8939 / -0.5683 / 0.1964 / 1.4827 / 3.1843
224 / LSS / -2.6058 / -0.5630 / 0.2160 / 1.4773 / 4.3465