SM Fig. S2
a
GATATTGCACTCATTTCGGAGACGCATTTCTCGAACAAGAACTTCATTAA 0050
ATTCAAAGGCTACTGCACCTATTGGACTACCCACCCGAGTGAGCGAGCCC 0100
GCGGAGGTACATCAATACTGATCAAACAAAATATTGAACATCACCTGCAA 0150
GACGACATACGGGAAACATATATTCAGGCTACAATTGTTTGCATTCAACA 0200
TAGTGGGACTGAATTAAATGTTGGGGCAGTATACTGCCCTCCTAGACACA 0250
CAATAACTAAAACACAATATCTTAGTATTTTCAACAAATTGGGATCATCC 0300
TGGGGGGAGACTTCAACGTAAAACACACAGCTTGGGGATCAAGACTGATT 0350
ACTCCAAATAAAGGCAGCCAGTTATTATCGGCCATTAATGAGGAAAAATG 0400
CGGATTCCACTCATCAGGAAAGCCTACGTACTGGCCAACTGACAACAAAA 0450
AAGTTTCGGATTTGATCGACTTCTTCATCTCTAAAGGAATCAATAATAAT 0500
TGCTGCTCACAGAGGGAATAGAAGATCTATCGTCAGATCATACCCCAGTA 0550
CTCCTGATTATTACTAGTGAAGTCATCAAAAAAGTGAAGAAACAAAATCT 0600
CACAACCAAACGTACCAACTGGGAAACTTTCAAGAATATCTGGATGAACT 0650
AATTGATCTGACGTTAACTGAGAGACAAAGATGAGCTAGAGAGTGCTGCT 0700
CAATATTTATCAACTGGATACAAATGGCTGCAAAAAAGGCAACTCCAGCT 0750
CCATGTGACAAACCAGAATACGAAACCAATTACCCAACTGAAATTAGAGA 0800
GCTAATCAAGGAACGGCGCAAATTATGACGAATATGGCACGGATCCAGAC 0850
ATCCTTCAGATAAAAGGAACTTCAATGTGGTGAGCAATCGTGTTAACTGA 0900
CTTATCAAAGAATTCAAGCAGAGCTGCATTAGTGAATACCTCAACGGATT 0950
GGGACCAGGAGCCGAAAAAGAATATTCTCTATGGAAAGCCACAAGACGAC 1000
TTAAAAGACCAACAGTCCAAGTGCCGCCAATCAAAATATGCACAAGGCCA 1050
ATGGATTAGAAAGGATAAAGAAAAAGCTGAACTCTTTGCCCAGTATCTTT 1100
CGAGTGTATTTCAACCACATGAAATAAACTCGAACATCAGCACGGCTCCA 1150
GAATACCT
b
Rhynchosciara americana non-LTR retrotransposon RaTART, complete
sequence Length=8268
Score = 1509 bits (817), Expect = 0.0
Identities = 907/947 (95%), Gaps = 19/947 (2%)
Strand=Plus/Minus
Probe 1 229 GTATACTGCCCTCCTAGACACACAATAACTAAAACACAATATCTTAG-TATTTTCAACAA 287
|||||||| |||||||||| ||||||||||||||||||||||||| | ||||||||||||
RaTART 1048 GTATACTGTCCTCCTAGACGCACAATAACTAAAACACAATATCTT-GATATTTTCAACAA 990
Probe 1 288 A-TTGG-----GA-TCATCCTGGGGGGAGACTTCAACGTAAAACACACAGCTTGGGGATC 340
| |||| | |||||||||||| ||||||||||||||||||||||||||||| |||
RaTART 989 ATTTGGATCAAAATTCATCCTGGGGGCAGACTTCAACGTAAAACACACAGCTTGGGAATC 930
Probe 1 341 AAGACTGATTACTCCAAATAAAGGCAGCCAGTTATTATCGGCCATTAATGAGGAAAAATG 400
||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
RaTART 929 AAGACTGATTACTCCAAATAAAGGCAGTCAATTATTATCGGCCATTAATGAGGGAAAATG 870
Probe 1 401 CGGATTCCACTCATCAGGAAAGCCTACGTACTGGCCAACTGACAACAAAAAAGTTTCGGA 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
RaTART 869 CGGATTCCACTCATCAGGAAAGCCTACGTACTGGCCAACTGACAACAAAAAAGTTCCGGA 810
Probe 1 461 TTTGATCGACTTCTTCATCTCTAAAGGAATCAATAATAATTGCTGCTC-ACAGAGGGAAT 519
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
RaTART 809 TTTGATCGACTTCTTCATCTCTAAAGGAATCAATAATAATTGCTGCTCAACAGAGGGAAT 750
Probe 1 520 AGAAGATCTATCGTCAGATCATACCCCAGTACTCCTGATTATTACTAGTGAAGTCATCAA 579
||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||
RaTART 749 AGAAGATCTATCGTCAGATCACACCCCAGTACTCCTGATTATTAGTAGTAAAGTCATCAA 690
Probe 1 580 AAAAGTGAAGAAACAAAATCTCACAACCAAACGTACCAACTGGGAAACTTTCA-AGAATA 638
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
RaTART 689 AAAAGTGAAGAAACAAAATCTCACAACCAAACGTACAAACTGGGAAACTTTCAGAGAATA 630
Probe 1 639 TCTGGATGAACTAATTGATCTG-ACGTT-AACTGAGAGACAAAGATGAGCTAGAGAGTGC 696
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
RaTART 629 TTTGGATGAACTAATTGATCTGAACGTTAAACTGAGAGACAAAGATGAGCTAGAGAGTGC 570
Probe 1 697 TGCTC-AATATTTATCAACTGGATACAAATGGCTGCAAAAAAGGCAACTCCAGCTCCATG 755
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
RaTART 569 TGCTCAAATATTTATCAACTGGATACAAATGGCTGCCAAAAAGGCAACTCCAGCTCCATG 510
Probe 1 756 TGACAAACCAGAATACGAAACCAATTACCCAACTGAAATTAGAGAGCTAATCAAGGAACG 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
RaTART 509 TGACAAACCAGAATACGAAACCAATTACCCAACTGAAATTAGAGAGCTAATCAAGGAACG 450
Probe 1 816 GCGCAAATTATGACGAATATGGCACGGATCCAGACATCCTTCAGATAAAAGGAACTTCAA 875
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
RaTART 449 GCGCAAATTAAGACGAATATGGCACGGATCCAGACATCCTTCAGATAAAAAGAACTTCAA 390
Probe 1 876 TGTGGTGAGCAATCGTGTTAACTGACTTATCAAAGAATTCAAGCAGAGCTGCATTAGTGA 935
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
RaTART 389 TGAGGTGAGCAATCGTGTTAACCGACTTATCAAAGAATTCAAGCAGAGCTGCATTAGTGA 330
Probe 1 936 ATACCTCAACGGATTGGGACCAGGAGCCGAAAAAGAATATTCTCTATGGA-AAG-C--CA 991
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||
RaTART 329 ATACCTCAACGGATTGGGACCAGGAGCCGAAAAAGAATATTCACTATGGACAAGACGACA 270
Probe 1 992 CAAGACGACTTAAAAGACCAACAGTCCAAGTGCCGCCAATCAAAATATGCACAAGGCCAA 1051
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
RaTART 269 CAAGACGACTTAAAAGACCAACAGTCCAAGTGCCGCCAATCAAAA-ATGCACAAGGCCAA 211
Probe 1 1052 TGGATTAGAAAGGATAAAGAAAAAGCTGAACTCTTTGCCCAGTATCTTTCGAGTGTATTT 1111
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
RaTART 210 TGGATTAGAAAGGATAAAGAAAAAGCTGAACTCTTTGCTCAGTATCTTTCGAGTGTATTT 151
Probe 1 1112 CAACCACATGAAATAAACTCGAACATCAGCACGGCTCCAGAATACCT 1158
|||||||||||||||||||||||||||||||||||||||||||||||
RaTART 150 CAACCACATGAAATAAACTCGAACATCAGCACGGCTCCAGAATACCT 104
Score = 110 bits (59), Expect = 2e-20
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand=Plus/Minus
Probe 1 1 GATATTGCACTCATTTCGGAGACGCATTTCTCGAACAAGAACTTCATTAAATTCAAAGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
RaTART 1203 GATATTGCACTCATTTCGGAGACGCATTTCTCGAACAAGAACTTCATTAAATTTAAAGGC 1144
Probe 1 61 TACTGCACC 69
|| |||||
RaTART 1143 -ACGGCACC 1136