Isolation, characterization, and expression analysis of an SKP1-like gene from ‘Shatian’ pummelo (Citrus grandis Osbeck)

Lijun Chaia, Manosh Kumar Biswas a, Xiaoxia Ge and Xiuxin Deng*

Supplementary Table 1. List of citrus varieties used in this study.

Cultivars Code / Common Name / Scientific Name / Tissue used RNA Extraction
1 / ‘Valencia’ Orange / C.sinensis ‘Valencia’ / Callus
2 / ‘Jincheng’ Orange / C. sinensis ‘Jincheng’ / Callus
3 / ‘Anliucheng’ Orange / C. sinensis ‘Anliucheng’ / Callus
4 / ‘Shatian’ pummelo / C.grandis ‘Shatian’ / Flower
5 / Frost Navel Orange / C.Sinensis’Frost’ / Callus
6 / Marsh Grapefruit / C.paradisi’Marsh’ / Callus

Supplementary Table 2 Code, scientific name and sequence ID in NCBI used in this study for the phylogenetic analysis.

Code / Scientific name / Sequence ID
1 / ASK1 / Arabidopsis thaliana / ref|NP_565123.1|
2 / ASK3 / A. thaliana / ref|NP_565604.1|
3 / ASK5 / A. thaliana / ref|NM_115865.1|
4 / ASK6 / A. thaliana / ref|NM_115166.1|
5 / ASK7 / A. thaliana / ref|NM_113079.2|
6 / ASK8 / A. thaliana / ref|NM_113078.1|
7 / ASK9 / A. thaliana / ref|NP_566694.1|
8 / ASK11 / A. thaliana / ref|NP_567959.1|
9 / ASK12 / A. thaliana / ref|NP_567967.1|
10 / ASK13 / A. thaliana / ref|NP_567090.1|
11 / ASK14 / A. thaliana / ref|NP_565296.1|
12 / ASK15 / A. thaliana / ref|NM_113463.1|
13 / ASK16 / A. thaliana / ref|NM_126370.2|
14 / ASK18 / A. thaliana / ref|NM_100897.2|
15 / ASK19 / A. thaliana / ref|NP_565295.1|
16 / ASK20 / A. thaliana / ref|NP_001078065.1|
17 / ASK21 / A. thaliana / ref|NP_001118876.1|
18 / ZM1 / Zea mays / gi|195628517:114-629
19 / ZM2 / Z. mays / gi|195620971:226-621
20 / OS1 / Oryza sativa / gi|23495740:91699-92172
21 / OS2 / O. sativa / gi|47680277:19-528
22 / OS3 / O. sativa / gi|115476151:61-570
23 / OS4 / O. sativa / gi|23495740:117269-117763
24 / OS5 / O. sativa / gi|47680275:54-554
25 / OS6 / O. sativa / gi|49388728:126480-126983
26 / OS11 / O. sativa / gi|7248388:c65314-65273
27 / BN1 / Brassica napus / gi|9082294:1184-1663
28 / Elg / Elaeis guineensis / gi|192910785:1-492
29 / Mtr1 / Medicago truncatula / gi|109255187:1-468
30 / Pet1 / Petunia x hybrida / gi|169647574:35-499
31 / Hul / Humulus lupulus / gi|151564276:1-474
32 / Nic1 / Nicotiana clevelandii / gi|3551837:37-498
33 / Msa / M. sativa / gi|4959709:1-462
34 / Sla2 / Silene latifolia / gi|84579466:110-631
35 / Sla1 / S. latifolia / gi|84579464:85-696