Supplementary Table2 Transcriptderived fragments upregulated in ‘Dangui’ and homologous sequences
No. / Length (bp) / Identity / Functional category / Functions or pathways / Homologous sequenceD1 / 102 / 83 / Unkown / Unkown / Solanum lycopersicum uncharacterized LOC101253934 (LOC101253934), mRNA
D2 / 110 / 90 / Metabolism / Synthesis of protein / Syringa reflexa voucher Li 3614 trnK gene, partial sequence
D3 / 107 / 71 / Metabolism / Tricarboxylic acid cycle / Prunus cerasifera pyruvate decarboxylase (PDC) mRNA, complete cds
D4 / 223 / 80 / Metabolism / Tricarboxylic acid cycle / Solanum tuberosum ATP-citrate synthase alpha chain protein 2-like mRNA
D5 / 204 / 68 / Signal transduction / Responsible for vegetative incompatibility / Solanum tuberosum vegetative incompatibility protein HET-E-1- like mRNA
D6 / 108 / 80 / Signal transduction / Protein ubiquitination / Solanum lycopersicum E3 ubiquitin-protein ligase UPL3-like mRNA
D7 / 352 / 78 / Response to stimulus / Plant stress response / Glycine max heat shock 70 kDa protein, mitochondrial-like (LOC100811003), mRNA
D8 / 72 / 88 / Metabolism / Phagocytosis / Ricinus communis cysteine protease, putative, mRNA
D9 / 110 / 75 / Metabolism / Resistance to pathogen，Jasmonic acid synthesis pathway / Catharanthus roseus allene oxide synthase mRNA, complete cds
D10 / 154 / 73 / Metabolism / Metabolism of a toxic substance / Citrus sinensis carboxylesterase 1-like (LOC102608476), mRNA
D11 / 81 / 85 / Metabolism / Catalyze glucosyl transfer / Olea europaea putative glucosyltransferase mRNA
D12 / 117 / 78 / Signal transduction / Salt stress / Solanum lycopersicum CBL-interacting protein kinase 14 (CIPK14), mRNA
D13 / 141 / 85 / Metabolism / Catalyze glycosyl transfer / Forsythia x intermedia RengUGT11 mRNA for UDP-sugar:glycosyltransferase
D14 / 158 / 80 / Metabolism / Fatty acid metabolism / Vitis vinifera medium-chain-fatty-acid-CoA ligase-like (LOC100244843), mRNA
D15 / 113 / 81 / Metabolism / Catalyze hydrolysis of fats / Arabidopsis thaliana lipase class 3 family protein mRNA
D16 / 102 / 73 / Signal transduction / Protein ubiquitination / Vitis vinifera U-box domain-containing protein 33-like (LOC100267999), mRNA
D17 / 108 / 93 / Secondary metabolism / Metabolic pathway of phenylpropanoid pathway / Olea europaea isoflavone reductase-like protein mRNA
D18 / 111 / 92 / Signal transduction / Hormonal signal transduction / Nicotiana tabacum LRR receptor-like protein kinase mRNA, complete cds
D19 / 203 / 82 / Unkown / Unkown / Solanum tuberosum uncharacterized LOC102588097 (LOC102588097), mRNA
D20 / 217 / 88 / Metabolism / Protein degradation / Solanum lycopersicum proteasome subunit alpha type-2-B-like, mRNA
D21 / 132 / 81 / Signal transduction / Plant defence responses / Ricinus communis ccr4-associated factor, putative, mRNA
D22 / 166 / 83 / Unkown / Unkown / Citrus sinensis uncharacterized LOC102626856 (LOC102626856), mRNA
D23 / 285 / 76 / Metabolism / Vesicular Transport / Fragaria vesca subsp. vesca coatomer subunit zeta-1-like (LOC101300742), mRNA
D24 / 145 / 78 / Signal transduction / Regulate physiological functions / Catharanthus roseus adenosine-5’-phosphosulfate-kinase (CRakn) mRNA
D25 / 199 / 79 / Transport / Transport of D-xylose / Citrus sinensis D-xylose-proton symporter-like 2-like (LOC102610785), mRNA
D26 / 130 / 84 / Metabolism / Photosynthesis / Ricinus communis ribulose-bisphosphate carboxylase, putative, mRNA
D27 / 80 / 59 / Signal transduction / Phosphorylation of glycerol / Solanum lycopersicum glycerol kinase-like (LOC101259139), mRNA
D28 / 119 / 70 / Unkown / Unkown / Cucumis sativus uncharacterized LOC101207080 (LOC101207080), mRNA
D29 / 103 / 79 / Metabolism / Hydrolysis of phospholipids / Solanum tuberosum probable protein phosphatase 2C 52-like (LOC102596312), mRNA
D30 / 108 / 76 / Photosynthesis and Energy / ATP hydrolysis / Glycine max ATPase ASNA1 homolog (LOC100819315), mRNA
D31 / 154 / 77 / Signal transduction / Endocytic process / Solanum lycopersicum clathrin interactor EPSIN 2-like (LOC101265874), mRNA
D32 / 83 / 87 / Transport / Phosphate transport / Populus trichocarpa mitochondrial phosphate transporter family protein mRNA
D33 / 117 / 85 / Signal transduction / Stress signal transduction / Solanum tuberosum CDPK-related kinase 1-like (LOC102591187), mRNA
D34 / 129 / 84 / Metabolism / Lipid metabolism / Nicotiana tabacum mRNA for S-adenosyl-L-homocysteine hydrolase
D35 / 169 / 73 / Signal transduction / Hormonal signal transduction / Solanum tuberosum probable receptor-like protein kinase At1g30570-like, mRNA
D36 / 129 / 80 / Metabolism / Protein degradation / Citrus sinensis autophagy-related protein 3-like (LOC102615659), mRNA
D37 / 93 / 78 / Metabolism / Store the iron / Coffea arabica cultivar Mundo novo ferritin (Fer1) mRNA
D38 / 97 / 80 / Metabolism / Translation initiation / Glycine max translation initiation factor IF-2, mitochondrial-like mRNA
D39 / 86 / 81 / Metabolism / Catalyze glycosyl transfer / Vitis vinifera UDP-glycosyltransferase 74F2-like (LOC100242294), mRNA
D40 / 105 / 89 / Metabolism / Plant isoprenoid pathway / Eleutherococcus senticosus 3-hydroxy-3-methylglutaryl coenzyme A reductase mRNA
D41 / 188 / 80 / Signal transduction / Protein degradation / Olea europaea polyubiquitin OUB1 mRNA
D42 / 97 / 74 / Unkown / Unkown / Solanum tuberosum uncharacterized LOC102582751 (LOC102582751), mRNA
D43 / 143 / 80 / Unkown / Unkown / Solanum lycopersicum uncharacterized LOC101251041 (LOC101251041), mRNA
D44 / 171 / 70 / Metabolism / Hydrolysis of proteins / Ricinus communis serine carboxypeptidase, putative, mRNA
D45 / 121 / 88 / Metabolism / Sugar metabolism / Arabidopsis lyrata subsp. lyrata xylose isomerase family protein, mRNA
D46 / 205 / 79 / Metabolism / Sugar metabolism / Medicago truncatula 2,3-bisphosphoglycerate-independent phosphoglycerate mutase mRNA
D47 / 155 / 76 / Metabolism / Abiotic stress response in plants / Solanum tuberosum beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyl -transferase like mRNA
D48 / 337 / 84 / Metabolism / Synthesis of cysteine / Ricinus communis cysteine synthase, putative, mRNA
D49 / 88 / 76 / Response to stimulus / Plant defense response / Fragaria vesca subsp. vesca peroxidase 63-like (LOC101293677), mRNA
D50 / 116 / 76 / Signal transduction / Regulate endoplasmic reticulum calcium homeostasis / Oryzias latipes 78 kDa glucose-regulated protein-like (LOC101157378), mRNA
D51 / 169 / 72 / Signal transduction / Involved in mRNA export coupled transcription activation / Vitis vinifera enhancer of yellow 2 transcription factor homolog mRNA
D52 / 107 / 94 / Secondary metabolism / Synthesis of geraniol / Olea europaea geraniol synthase 1 (GES1) mRNA
D53 / 94 / 79 / Metabolism / Sugar metabolism / Picrorhiza kurrooa UDP-glucosyltransferase isoform 1 mRNA
D54 / 84 / 80 / Metabolism / Synthesis of fatty acid / Nicotiana tabacum acetyl-CoA carboxylase (ACC) mRNA
D55 / 146 / 75 / Metabolism / Hydrolysis of phospholipids / Solanum lycopersicum phospholipase PLDa2 (PLDa2), mRNA
D56 / 72 / 83 / Signal transduction / Regulate phenylpropanoid metabolic pathway / Petunia exserta MYB transcription factor EOBII (EOBII) mRNA
D57 / 88 / 75 / Metabolism / Catalyze the transfer of a methyl / Solanum tuberosum methyltransferase-like protein 2-like (LOC102588464), mRNA
Supplementary Table3 Transcriptderived fragments upregulated in ‘Yingui’ and homologous sequences
No. / Length (bp) / Identity / Functional category / Functions orpathways / Homologous sequenceY1 / 59 / 86 / Signal transduction / RNA editing / Arabidopsis thaliana RNA recognition motif-containing protein mRNA
Y2 / 160 / 73 / Photosynthesis and Energy / Oxidative phosphorylation / Vitis vinifera probable NADH dehydrogenase-like (LOC100253444), mRNA
Y3 / 102 / 84 / Metabolism / Purine biosynthesis / Populus balsamifera isolate WHR03 haplotype B amidophosphoribosyltransferase gene
Y4 / 143 / 84 / Transport / Sugar transport / Solanum tuberosum probable sugar phosphate/phosphate translocator At2g25520-like mRNA
Y5 / 95 / 96 / Metabolism / Encoding ribosomal proteins / Fraxinus excelsior isolate frax207 rpl16-like (rpl16) gene
Y6 / 75 / 73 / Signal transduction / Phosphorylation of proteins / Zea mays putative protein kinase superfamily protein (LOC100279292), mRNA
Y7 / 85 / 79 / Metabolism / Sugar metabolism / Solanum tuberosum alkaline/neutral invertase CINV2-like (LOC102602949) mRNA
Y8 / 68 / 84 / Metabolism / Sugar metabolism / Coffea canephora sucrose synthase (SS2) mRNA, partial cds
Y9 / 204 / 78 / Metabolism / Tricarboxylic acid cycle / Ricinus communis 2-oxoisovalerate dehydrogenase, putative, mRNA
Y10 / 200 / 73 / Photosynthesis and Energy / ATP hydrolysis to generate energy / Vitis vinifera calcium-transporting ATPase 10, plasma membrane- type-like , mRNA
Y11 / 148 / 82 / Transport / Mitochondrial electron transport chain / Solanum lycopersicum thylakoid membrane protein slr0575-like mRNA
Y12 / 176 / 77 / Unkown / Unkown / Solanum tuberosum uncharacterized LOC102603976 (LOC102603976), mRNA
Y13 / 117 / 85 / Metabolism / Involved in many biological processes / Populus trichocarpa radical SAM domain-containing family protein mRNA
Y14 / 108 / 95 / Response to stimulus / Plant stress response / Vitis vinifera calreticulin-like (LOC100256319), mRNA
Y15 / 92 / 82 / Metabolism / Polyamine biosynthesis pathway / Persea americana arginine decarboxylase gene
Y16 / 95 / 79 / Metabolism / Catalyze the activation of carboxylic acids / Solanum lycopersicum probable acyl-activating enzyme 6-like mRNA
Y17 / 152 / 89 / Defence response / Pathogenesis-related / Olea europaea pathogenesis-related thaumatin-like protein mRNA
Y18 / 144 / 81 / Signal transduction / Efficient homologous recombination / Citrus sinensis AP-5 complex subunit mu-like (LOC102630193), mRNA
Y19 / 94 / 82 / Signal transduction / Regulate gene expression / Glycine max BTB/POZ domain-containing protein At1g63850-like mRNA
Y20 / 92 / 85 / Response to stimulus / Plant stress response / Solanum tuberosum probable indole-3-acetic acid-amido synthetase GH3.5-like mRNA
Y21 / 102 / 94 / Photosynthesis and Energy / ATP hydrolysis to generate energy / Olea europaea putative apyrase mRNA
Y22 / 92 / 97 / Metabolism / Triacylglyceride synthesis pathway / Olea europaea cultivar Koroneiki diacylglycerol acyltransferase type 2 mRNA
Y23 / 117 / 89 / Metabolism / Oxidation decomposition of unsaturated fatty acids / Solanum lycopersicum peroxisomal 2,4-dienoyl-CoA reductase-like mRNA
Y24 / 121 / 79 / Metabolism / Involved in chloroplast and mitochondrial RNA processing / Vitis vinifera pentatricopeptide repeat-containing protein At4g28010-like mRNA
Y25 / 74 / 55 / Defence response / DNA repair / Fragaria vesca subsp. vesca DNA repair and recombination protein pif1, mRNA
Y26 / 134 / 90 / Metabolism / Hydrolysis of phosphoinositide / Solanum lycopersicum phosphoinositide phospholipase C 6-like mRNA
Y27 / 74 / 84 / Metabolism / Transcription initiation / Solanum tuberosum transcription initiation factor TFIID subunit 2-like mRNA
Y28 / 110 / 82 / Transport / Potassium transport / Solanum lycopersicum potassium transporter 4-like (LOC101262083), mRNA
Y29 / 83 / 76 / Transport / Phospholipid transport / Arabidopsis thaliana ALA-interacting subunit 3 mRNA
Y30 / 89 / 79 / Signal transduction / Hydrolysis of proteins / Arabidopsis thaliana ATP-dependent protease La (LON) domain protein mRNA
Y31 / 106 / 73 / Signal transduction / Regulate gene expression / Populus trichocarpa speckle-type POZ family protein (POPTR_0427s00200g) mRNA
Y32 / 176 / 76 / Metabolism / Protein dephosphorylation / Ricinus communis protein phosphatase 2a, regulatory subunit, putative, mRNA
Y33 / 224 / 86 / Signal transduction / Transcription elongation / Citrus sinensis transcription elongation factor B polypeptide 1-like mRNA
Y34 / 111 / 86 / Metabolism / Unsaturated fatty acid Metabolism / Olea europaea lipoxygenase mRNA
Y35 / 242 / 71 / Metabolism / Salicylic acid carboxyl methyl transfer / Populus trichocarpa S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase (SAMT) mRNA
Y36 / 261 / 70 / Unkown / Unkown / Solanum tuberosum uncharacterized LOC102597453 (LOC102597453), mRNA
Y37 / 73 / 84 / Defence response / Plant stress response / Citrus sinensis pto-interacting protein 1-like (LOC102623610), mRNA
Y38 / 126 / 81 / Photosynthesis and Energy / ATP hydrolysis / Solanum tuberosum phospholipid-transporting ATPase 3-like (LOC102587636), mRNA
Y39 / 141 / 79 / Unkown / Unkown / Solanum tuberosum uncharacterized LOC102589286 (LOC102589286), mRNA
Y40 / 135 / 91 / Secondary metabolism / Secologanin synthsis / Olea europaea cultivar Dolce d'Andria putative secologanin synthase (SLS2) mRNA
Y41 / 75 / 81 / Signal transduction / Pathogen-associated protein / Solanum lycopersicum PSTVd RNA-binding protein Virp1d (LOC543627), mRNA
Y42 / 181 / 80 / Signal transduction / Phosphorylate phosphatidylinositol / Ricinus communis phosphatidylinositol 4-kinase, putative, mRNA
Y43 / 116 / 84 / Photosynthesis and Energy / Cyanide resistant respiration pathway / Corylus heterophylla mitochondrial alternative oxidase 1A mRNA
Y44 / 90 / 87 / Response to stimulus / Plant stress response / Camellia sinensis auxin response factor 1 mRNA
Y45 / 194 / 69 / Photosynthesis and Energy / Electron transport chain / Hyoscyamus muticus cytochrome P450 hydroxylase (HPO) mRNA