Does the Average Area Differ from Zero?
Error in Analyze: command failed: mri_glmfit --y /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAge Gender/y.mgh --fsgd /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/qdec.fsgd dods --glmdi r /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender --surf fsaverage lh --label /home/spjwke r_PAC/Lena/CT_SA/FSL/fsaverage/label/lh.aparc.label --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_c ovIQAgeGender/contrasts/lh-Avg-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_cov IQAgeGender/contrasts/lh-Diff-HC-Abused-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-are a-AHC_covIQAgeGender/contrasts/lh-Diff-Male-Female-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/ qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-X-Group-Gender-Intercept-area.mat
lh-Avg-Intercept-area ------
Does the average area differ from zero?
Nuisance factors: IQ Age
1.000 1.000 1.000 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000;
lh-Diff-HC-Abused-Intercept-area ------
Does the average area, accounting for Gender, differ between HC and Abused?
Nuisance factors: IQ Age
1.000 -1.000 1.000 -1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000;
lh-Diff-Male-Female-Intercept-area ------
Does the average area, accounting for Group, differ between Male and Female?
Nuisance factors: IQ Age
1.000 1.000 -1.000 -1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000;
lh-X-Group-Gender-Intercept-area ------
Is there a Group--Gender interaction in the mean area?
Nuisance factors: IQ Age
1.000 -1.000 -1.000 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000;
ninputs = 49
Checking inputs
nframestot = 49
Allocing output
Done allocing
nframes = 49
Writing to /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/y.mgh
gdfReadHeader: reading /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/qdec.fsgd
INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done.
Continuous Variable Means (all subjects)
0 IQ 98.2449 13.5474
1 Age 17.5767 1.92215
Class Means of each Continuous Variable
1 GroupHC-GenderMale 105.1905 17.4486
2 GroupAbused-GenderMale 89.2667 18.2273
3 GroupHC-GenderFemale 106.0000 17.8467
4 GroupAbused-GenderFemale 90.0000 16.3357
INFO: gd2mtx_method is dods
Reading source surface /home/spjwker_PAC/Lena/CT_SA/FSL/fsaverage/surf/lh.white
Number of vertices 163842
Number of faces 327680
Total area 65416.648438
AvgVtxArea 0.399267
AvgVtxDist 0.721953
StdVtxDist 0.195470
$Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $
cwd /home/spjwker_PAC/Lena/CT_SA/FSL
cmdline mri_glmfit --y /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/y.mgh --fsgd /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/qdec.fsgd dods --glmdir /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender --surf fsaverage lh --label /home/spjwker_PAC/Lena/CT_SA/FSL/fsaverage/label/lh.aparc.label --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-Avg-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-Diff-HC-Abused-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-Diff-Male-Female-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-X-Group-Gender-Intercept-area.mat
sysname Linux
hostname nanlnx2.iop.kcl.ac.uk
machine x86_64
user spjwker
FixVertexAreaFlag = 1
UseMaskWithSmoothing 1
OneSampleGroupMean 0
y /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/y.mgh
logyflag 0
usedti 0
FSGD /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/qdec.fsgd
labelmask /home/spjwker_PAC/Lena/CT_SA/FSL/fsaverage/label/lh.aparc.label
maskinv 0
glmdir /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender
IllCondOK 0
ReScaleX 1
DoFFx 0
Creating output directory /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender
Loading y from /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/y.mgh
INFO: gd2mtx_method is dods
Saving design matrix to /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/Xg.dat
Normalized matrix condition is 13602.3
Design matrix ------
1.000 0.000 0.000 0.000 110.000 0.000 0.000 0.000 16.170 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 108.000 0.000 0.000 0.000 16.170 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 118.000 0.000 0.000 0.000 14.500 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 113.000 0.000 0.000 0.000 17.250 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 125.000 0.000 0.000 0.000 17.330 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 102.000 0.000 0.000 0.000 15.420 0.000 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 86.000 0.000 0.000 0.000 19.500 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 93.000 0.000 0.000 0.000 20.830 0.000 0.000;
0.000 0.000 1.000 0.000 0.000 0.000 115.000 0.000 0.000 0.000 16.420 0.000;
0.000 0.000 0.000 1.000 0.000 0.000 0.000 95.000 0.000 0.000 0.000 15.000;
0.000 1.000 0.000 0.000 0.000 107.000 0.000 0.000 0.000 18.080 0.000 0.000;
0.000 0.000 1.000 0.000 0.000 0.000 106.000 0.000 0.000 0.000 16.500 0.000;
0.000 1.000 0.000 0.000 0.000 103.000 0.000 0.000 0.000 18.830 0.000 0.000;
1.000 0.000 0.000 0.000 106.000 0.000 0.000 0.000 19.080 0.000 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 101.000 0.000 0.000 0.000 17.750 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 71.000 0.000 0.000 0.000 18.670 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 110.000 0.000 0.000 0.000 17.750 0.000 0.000;
1.000 0.000 0.000 0.000 106.000 0.000 0.000 0.000 19.080 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 91.000 0.000 0.000 0.000 18.330 0.000 0.000 0.000;
0.000 0.000 0.000 1.000 0.000 0.000 0.000 82.000 0.000 0.000 0.000 17.920;
0.000 0.000 0.000 1.000 0.000 0.000 0.000 80.000 0.000 0.000 0.000 19.670;
0.000 1.000 0.000 0.000 0.000 84.000 0.000 0.000 0.000 18.670 0.000 0.000;
1.000 0.000 0.000 0.000 109.000 0.000 0.000 0.000 16.670 0.000 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 99.000 0.000 0.000 0.000 20.080 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 88.000 0.000 0.000 0.000 13.670 0.000 0.000;
0.000 0.000 0.000 1.000 0.000 0.000 0.000 82.000 0.000 0.000 0.000 15.920;
0.000 1.000 0.000 0.000 0.000 77.000 0.000 0.000 0.000 18.670 0.000 0.000;
0.000 0.000 0.000 1.000 0.000 0.000 0.000 95.000 0.000 0.000 0.000 16.920;
0.000 1.000 0.000 0.000 0.000 73.000 0.000 0.000 0.000 18.080 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 73.000 0.000 0.000 0.000 12.920 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 82.000 0.000 0.000 0.000 20.830 0.000 0.000;
1.000 0.000 0.000 0.000 96.000 0.000 0.000 0.000 16.250 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 119.000 0.000 0.000 0.000 18.250 0.000 0.000 0.000;
0.000 0.000 1.000 0.000 0.000 0.000 94.000 0.000 0.000 0.000 19.830 0.000;
1.000 0.000 0.000 0.000 107.000 0.000 0.000 0.000 15.170 0.000 0.000 0.000;
0.000 0.000 0.000 1.000 0.000 0.000 0.000 115.000 0.000 0.000 0.000 13.500;
1.000 0.000 0.000 0.000 112.000 0.000 0.000 0.000 20.170 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 88.000 0.000 0.000 0.000 18.830 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 82.000 0.000 0.000 0.000 18.250 0.000 0.000 0.000;
0.000 0.000 0.000 1.000 0.000 0.000 0.000 81.000 0.000 0.000 0.000 15.420;
1.000 0.000 0.000 0.000 97.000 0.000 0.000 0.000 17.920 0.000 0.000 0.000;
0.000 1.000 0.000 0.000 0.000 92.000 0.000 0.000 0.000 19.080 0.000 0.000;
1.000 0.000 0.000 0.000 109.000 0.000 0.000 0.000 18.420 0.000 0.000 0.000;
1.000 0.000 0.000 0.000 104.000 0.000 0.000 0.000 19.330 0.000 0.000 0.000;
0.000 0.000 1.000 0.000 0.000 0.000 108.000 0.000 0.000 0.000 18.330 0.000;
1.000 0.000 0.000 0.000 93.000 0.000 0.000 0.000 19.330 0.000 0.000 0.000;
0.000 0.000 1.000 0.000 0.000 0.000 100.000 0.000 0.000 0.000 19.330 0.000;
1.000 0.000 0.000 0.000 114.000 0.000 0.000 0.000 14.500 0.000 0.000 0.000;
0.000 0.000 1.000 0.000 0.000 0.000 113.000 0.000 0.000 0.000 16.670 0.000;
------
ERROR: matrix is ill-conditioned or badly scaled, condno = 13602.3
------
Possible problem with experimental design:
Check for duplicate entries and/or lack of range of
continuous variables within a class.
If you seek help with this problem, make sure to send:
1. Your command line:
mri_glmfit --y /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/y.mgh --fsgd /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/qdec.fsgd dods --glmdir /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender --surf fsaverage lh --label /home/spjwker_PAC/Lena/CT_SA/FSL/fsaverage/label/lh.aparc.label --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-Avg-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-Diff-HC-Abused-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-Diff-Male-Female-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-X-Group-Gender-Intercept-area.mat
2. The FSGD file (if using one)
3. And the design matrix above
Error in Analyze: command failed: mri_glmfit --y /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/y.mgh --fsgd /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/qdec.fsgd dods --glmdir /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender --surf fsaverage lh --label /home/spjwker_PAC/Lena/CT_SA/FSL/fsaverage/label/lh.aparc.label --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-Avg-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-Diff-HC-Abused-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-Diff-Male-Female-Intercept-area.mat --C /home/spjwker_PAC/Lena/CT_SA/FSL/qdec/lh-area-AHC_covIQAgeGender/contrasts/lh-X-Group-Gender-Intercept-area.mat