Supplementary table 1

List of the remaining 43 genes which were over expressed in the 3 human CD4 T cells studied after infection by HIV-1. The relative expressions (mean of the 3 humans studied) of the genes between uninfected cells and HIV-1 infected cells are presented. The relative expressions of the genes of each individual are detailed.

Mean relative expression (AU) at 24h post infection / ROB / BO / BA
Cas-Br-M (murine) ectropic retroviral transforming sequence b / 4.4±1.6 / 5,08 / 5,55 / 2,64
follicle stimulating hormone receptor / 4.3±1.8 / 3,79 / 6,31 / 2,88
general transcription factor IIH, polypeptide 2 (44kD subunit) / 4.2±2.4 / 6,86 / 3,40 / 2,26
GATA binding protein 4 / 4.1±1.8 / 3,94 / 5,96 / 2,30
anaplastic lymphoma kinase (Ki-1) / 4.0±1.0 / 4,59 / 4,64 / 2,82
polymerase (DNA directed), alpha / 3.9±1.8 / 3,51 / 5,91 / 2,43
apolipoprotein E / 3.9±1.8 / 5,97 / 3,33 / 2,48
polycystic kidney disease 1 (autosomal dominant) / 3.7±1.4 / 4,18 / 4,87 / 2,27
CDC-like kinase 3 / 3.5±1.7 / 5,38 / 3,18 / 2,03
angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 / 3.5±1.2 / 4,07 / 4,22 / 2,09
matrix metalloproteinase 9 (gelatinase B, 92kD gelatinase, 92kD type IV collagenase) / 3.3±1.1 / 3,97 / 3,90 / 2,00
BRF1 homologue, subunit of RNA polymerase III transcription initiation factor IIIB (Saccharomycescerevisiae) / 3.3±1.1 / 3,41 / 4,31 / 2,05
chondroitin sulfate proteoglycan 5 (neuroglycan C) / 3.1±0.9 / 2,94 / 4,15 / 2,29
roundabout, axon guidance receptor, homolog 1 (Drosophila) / 3.1±1.4 / 2,37 / 4,68 / 2,15
solute carrier family 22 (organic anion transporter), member 6 / 3.0±0.7 / 3,49 / 3,25 / 2,26
thrombospondin 2 / 2.9±0.7 / 3,66 / 3,00 / 2,27
small inducible cytokine A1, I-309 / 2.9±0.3 / 3,00 / 3,20 / 2,65
glutamate receptor, metabotropic 5 / 2.9±0.4 / 3,07 / 3,12 / 2,47
discoidin domain receptor family, member 1 / 2.9±0.6 / 2,26 / 3,35 / 3,02
PTK7 protein tyrosine kinase 7 / 2.9±0.5 / 3,09 / 3,24 / 2,25
v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) / 2.9±0.5 / 3,46 / 2,42 / 2,69
topoisomerase (DNA) I / 2.8±0.9 / 3,83 / 2,52 / 2,09
tachykinin receptor 1 / 2.8±0.4 / 2,30 / 3,08 / 2,99
Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog / 2.7±0.6 / 2,97 / 3,23 / 2,01
v-Ha-ras Harvey rat sarcoma viral oncogene homolog / 2.7±0.6 / 3,34 / 2,61 / 2,18
doublecortex; lissencephaly, X-linked (doublecortin) / 2.7±0.9 / 2,30 / 3,77 / 2,02
dentatorubral-pallidoluysian atrophy (atrophin-1) / 2.7±0.3 / 2,68 / 2,32 / 3,00
neuroepithelial cell transforming gene 1 / 2.6±0.3 / 2,97 / 2,68 / 2,29
activated p21cdc42Hs kinase / 2.6±0.6 / 2,55 / 3,30 / 2,07
NIMA (never in mitosis gene a)-related kinase 3 / 2.6±0.7 / 3,32 / 2,31 / 2,12
endothelin 2 / 2.6±0.4 / 2,49 / 2,98 / 2,26
integrin, alpha 6 / 2.5±0.4 / 2,35 / 2,23 / 2,92
serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2 / 2.5±0.5 / 3,07 / 2,00 / 2,37
selenium binding protein 1 / 2.5±0.3 / 2,75 / 2,49 / 2,18
teratocarcinoma-derived growth factor 3, pseudogene / 2.4±0.2 / 2,52 / 2,59 / 2,21
deoxyribonuclease I-like 1 / 2.4±0.3 / 2,61 / 2,08 / 2,59
integrin, alpha X (antigen CD11C (p150), alpha polypeptide) / 2.4±0.4 / 2,89 / 2,29 / 2,06
homeo box B5 / 2.4±0.3 / 2,28 / 2,09 / 2,72
tyrosine kinase, non-receptor, 1 / 2.4±0.1 / 2,24 / 2,51 / 2,33
excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D) / 2.3±0.2 / 2,27 / 2,57 / 2,20
proteasome (prosome, macropain) inhibitor subunit 1 (PI31) / 2.3±0.4 / 2,02 / 2,69 / 2,18
ribosomal protein S6 kinase, 90kD, polypeptide 2 / 2.3±0.1 / 2,40 / 2,21 / 2,15
S100 calcium binding protein A1 / 2.2±0.2 / 2,12 / 2,08 / 2,38

1

Supplementary table 2

List of the 373 genes related to glycosylation analyzed in the study.

1- List of the 277 glycosylation-related genes for which expression was detected in CD4 T lymphoblasts.

GENE SYMBOL / GENE NAME
GLYCOSYLTRANSFERASE FAMILY
Acetylgalactosaminyl-transferase (GalNAc-Transferases) SUBFAMILY
GALGT / Beta-1,4-N-acetylgalactosaminyltransferase
GALNT1 / UDP-N-Acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
GALNT2 / UDP-N-Acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
GALNT3 / UDP-N-Acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
GALNT4 / UDP-N-Acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4
GALNT6 / UDP-N-Acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6
GALNT8 / UDP-N-Acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8
GALNT10 (isoforms 1 and 2) / UDP-N-Acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10
GALNT11 / UDP-N-Acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
GALNT12 / UDP-N-Acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
GBGT1 / Globoside alpha-1,3-N-acetylgalactosaminyltransferase
B4GALNAC-T3 / Beta 1,4-N-acetylgalactosaminyltransferase-transferase-III
CSGALNACT1 / hondroitin beta1,4 N-acetylgalactosaminyltransferase 1
CSGALNACT2 / Chondroitin beta1,4 N-acetylgalactosaminyltransferase 2
CHSY1 / Carbohydrate (chondroitin) synthase 1
CHPF / Chondroitin polymerizing factor
B3GALNT2 / Beta-1,3-N-acetylgalactosaminyltransferase 2
CRYBG3 / Beta-gamma crystallin domain containing 3
Acetylglucosaminyl-transferase (GlcNAc-Transferase ) SUBFAMILY
OGT (isoforms 1,2 and 3) / UDP-N-Acetylglucosamine:polypeptide N-acetylglucosaminyltransferase
OGT (isoforms 1 and 2) / UDP-N-Acetylglucosamine:polypeptide N-acetylglucosaminyltransferase
BETA3GNT2 (isoforms 1 and 2) / UDP-GlcNAc: betaGal beta-1,3-N-acetylglucosaminyltransferase 2
BETA3GNT4 / UDP-GlcNAc: beta-1,3-N-acetylglucosaminyltransferase 4
BETA3GNT6 / UDP-GlcNAc: betaGal beta-1,3-N-acetylglucosaminyltransferase 6
BETA3GNT7 / UDP-GlcNAc: betaGal beta-1,3-N-acetylglucosaminyltransferase 7
GCNT1 / Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase
GCNT2 (isoforms A,B,C) / N-Acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase
LARGE (variants 1 and 2) / Acetylglucosaminyltransferase-like protein
MGAT1 / Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
MGAT2 / Alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
MGAT4A / N-Acetylglucosaminyltransferase 4A
MGAT4B (isoform 1) / N-Acetylglucosaminyltransferase 4B
MGAT4B (isoform 2) / N-Acetylglucosaminyltransferase 4B
MGAT5 / Alpha-1,3 (6)-mannosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase
MFNG / Manic fringe (Drosophila) homolog
POMGNT1 / O-linked mannose beta1,2-N-acetylglucosaminyltransferase
MGAT4C / UDP-N-acetylglucosamine: a-1,3-D-mannoside beta-1,4-N- acetylglucosaminyltransferase IV - homolog
C2GNT3 / Core 2 beta-1,6-N-acetylglucosaminyltransferase 3
CCDC126 / Coiled-coil domain containing 126
ALG13 / Csparagine-linked glycosylation 13 homolog (S. cerevisiae)
Acetylglucosaminyl-phospho-transferase (GlcNAc-P-Transferase ) SUBFAMILY
DPAGT1(isoforms 1 and 2) / N-Acetylglucosaminylphosphotransferase 1
Fucosyl-transferase (Fuc-Transferase ) SUBFAMILY
FUT1 / Fucosyltransferase 1
FUT5 / Fucosyltransferase 5
FUT8 (isoforms a, b and c) / Fucosyltransferase 8
FUT10 / Fucosyltransferase 10
FUT11 / Fucosyltransferase 11
POFUT1 (isoform 1) / O-fucosyltransferase
POFUT1 (isoform 2) / O-fucosyltransferase
FUT13 (isoforms a,b and c) / O-fucosyltransferase
Galactosyl-transferase (Gal-Transferase ) SUBFAMILY
C1GALT1 / Core 1, beta3-galactosyltransferase/core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase
C1GALT2 / Core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 2
B3GALT2 / Beta3-galactosyltransferase, polypeptide 2
B3GALT3 (variants 1,2,3 and 4) / Beta3-galatosyltransferase, polypeptide 3/UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide3
B3GALT4 / Beta3-galactosyltransferase, polypeptide 4/UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide4
B4GALT1 / Beta-1,4-galactosyltransferase 1/UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase,polypeptide 1
B4GALT2 (isoforms a and b) / Beta-1,4-galactosyltransferase 2/UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase,polypeptide2
B4GALT3 / Beta-1,4-galactosyltransferase 3/UDP-Gal:betaGlcNAc beta 1,4-Galactosyltransferase,polypeptide3
B4GALT4 / Beta-1,4-galactosyltransferase 4
B4GALT5 / Beta-1,4-galactosyltransferase 5/beta-1,4-GalTase 5/beta-1,4-GalT II/ beta-1,4-GalT IV/UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase,polypeptide 5
B4GALT6 / Beta-1,4-galactosyltransferase 6/UDP-Gal: glucosylceramide beta-1,4-galactosyltransferase
B4GALT7 / Beta-1,4-galactosyltransferase 7/xylosylprotein beta1,4-galactosyltransferase polypeptide 7
WDFY3 (isoforms 1 and 2) / WD repeat and FYVE domain containing 3
Glucosyl-transferase (Glc-Transferase ) SUBFAMILY
ALG5 / Dilochyl-phosphate beta-glucosyltransferase
ALG6 / Man(9)GlcNAc(2)-PP-Dol alpha-1,3-glucosyltransferase
ALG8 / Hypothetical protein similar to glucosyltransferase
ALG10 / Alpha-1, 2-glucosyltransferase
UGCGL1 / UDP-Glucose:glycoprotein glucosyltransferase 1
UGCG / UDP-glucose ceramide glucosyltransferase
PLOD3 / Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
GYG / glycogenin
Glucuronyl-transferase (Glu-Transferase ) SUBFAMILY
B3GAT3 / Beta-1,3-glucuronyltransferase 3
ALG14 / Asparagine-linked glycosylation 14 homolog (S. cerevisiae)
Heparan-sulfate Polymerase SUBFAMILY
EXT1 / Exostoses (multiple) 1
EXT2 / Exostoses (multiple) 2
EXTL2 / Exostoses, multiple, like 2
EXTL3 / Exostoses (multiple)-like 3
Mannosyl-transferase (Man-Transferase ) SUBFAMY
ALG1 / Beta-1,4 mannosyltransferase
ALG2 (isoforms 1 and 2) / Alpha-1,3 mannosyltransferase, hypothetical protein FLJ14511
ALG3 / Alpha-1,3 mannosyltransferase / Protein Not-56 like
DIBD1 / Alpha-1,2 mannosyltransferase, disrupted in bipolar affective disorder 1
ALG12 / Alpha-1,6 mannosyltransferase
DPM1 / Dolichol-phosphate mannosyltransferase polypeptide 1
DPM2 (variants 1 and 2) / Dolichol-phosphate mannosyltransferase polypeptide 2 regulatory subunit
DPM3 (isoforms 1 and 2) / Dolichol-phosphate mannosyltransferase polypeptide 3
POMT1 / Protein O-mannosyltransferase 1
POMT2 / Protein O-mannosyltransferase 2
SMP3 / SMP3 mannosyltransferase
Oligosaccharyl-transferase (OS-transferase ) SUBFAMILY
RPN1 / Ribophorin I
RPN2 / Ribophorin II
DDOST / Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
DAD-1 / Defender against apoptotic cell death 1
ITM1 / Integral membrane protein 1
SIMP / Source of immunodominant MHC-associated peptides
Sialyl-transferase (NeuAc-transferase ) SUBFAMILY
ST3Gal I / Beta-galactoside alpha-2,3-sialyltransferase (Sialyltransferase 4A)
ST3Gal II / Beta-galactoside alpha-2,3-sialyltransferase (Sialyltransferase 4B)
ST3Gal III / Beta-galactoside alpha-2,3-sialyltransferase (Sialyltransferase 6)
ST3Gal IV / Beta-galactoside alpha-2,3-sialyltransferase (Sialyltransferase 4C)
ST3Gal V / Lactosylceramide alpha-2,3-sialyltransferase (GM3 synthase)
ST6Gal I (isoform a nad b) / Beta-galactoside alpha-2,6-sialyltransferase
ST6GalNAc II / N-acetylgalactosamine-alpha-2,6-sialyltransferase (sialyltransferase 7B)
ST6GalNAc IV (isoforms a and b) / Sialyltransferase 7D isoform a N-acetylgalactosamine-alpha-2,6-sialyltransferase
ST6GalNAc V / Sialyltransferase 7E, N-acetylgalactosamine-alpha-2,6-sialyltransferase
ST6GalNAc VI / N-Acetylgalactosamine-alpha-2,6-sialyltransferase (GD1/GQ1b/GT1a synthase)
ST8Sia I / Alpha-N-acetylneuraminate: alpha-2,8-sialyltransferase (GD3 synthase)
ST8Sia IV (isoforms a and b) / Alpha-2,8-sialyltransferase (Sialyltransferase 8D ou PST)
Xylosyl-transferase (Xyl-transferase ) SUBFAMILY
XYLT-I / Xylosyltransferase I
XYLT-II / Xylosyltransferase II
Phosphatidyl-inositol glycan (PIG) SUBFAMILY
PIGA (isoforms 1,2 and 3) / Phosphatidylinositol-glycan biosynthesis, class A protein
PIGB / Phosphatidylinositol-glycan biosynthesis, class B protein
PIGC / Phosphatidylinositol-glycan biosynthesis, class C protein
PIGF (isoforms 1 and 2) / Phosphatidylinositol-glycan biosynthesis, class F protein
PIGH / Phosphatidylinositol-glycan biosynthesis, class H protein
PIGK / Phosphatidylinositol-glycan biosynthesis, class K protein
PIGL / Phosphatidylinositol-glycan biosynthesis, class L protein
PIGM / Phosphatidylinositol-glycan biosynthesis, class M protein
PIGN / Phosphatidylinositol-glycan biosynthesis, class N protein
PIGO (isoforms 1 and 2) / Phosphatidylinositol glycan, class O protein
DSCR5 (isoforms 1, 2 and 3) / Phosphatidylinositol-glycan biosynthesis, class P protein, Down's syndrome critical region protein 5
PIGQ (isoforms 1 and 2) / Phosphatidylinositol-glycan biosynthesis, class Q protein
PIGS / Phosphatidylinositol glycan class S
PIGT / Phosphatidyl inositol glycan class T
CDC91L1 / CDC91 cell division cycle 91-like 1
GPAA1 / Glycosylphosphatidylinositol anchor attachment 1
GPLD1 (isoforms 1 and 2) / Glycosylphosphatidylinositol specific phospholipase D1 isoform 1 precursor
Hyaluronan Synthase SUBFAMILY
HAS3 (isoforms a and b) / Hyaluronan synthase 3
Ribosyltransferase SUBFAMILY
ADPRT / ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)
ADPRTL1 / ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1
ADPRTL2 / ADP-ribosyltransferase (NAD+; poly(ADP-ribose) polymerase)-like 2
ADPRTL3 / ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3
"Other glycosyltransferases"
AD-017 (variants 1 and 2) / Glycosyltransferase AD-017
GYLTL1B / Glycosyltransferase-like 1B
C1orf17 / Chromosome 1 open reading frame 17
CEECAM1 / Cerebral endothelial cell adhesion molecule 1
GLT25D1 / Glycosyltransferase 25 domain containing 1
GBE1 / Glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme)
GLYCOSYLTRANSLOCASE FAMILY
Flippase SUBFAMILY
MPDU1 / Mannose-P-Dolichol Utilization Defect 1 protein - Dol-P-man Flippase
RFT1 / Flippase
GLYCOSIDASE FAMILY
Acetyl-galactosaminidase SUBFAMILY
NAGA / N-Acetyl-alpha-D-galactosaminidase
Acetyl-glucosaminidase SUBFAMILY
NAGLU / N-Acetyl-alpha-D-glucosaminidase
NAGPA / N-Acetyl-1-phosphodiester alpha-N-acetylglucosaminidase
FLJ21865 / Endo-beta-N-acetylglucosaminidase
Amylase SUBFAMILY
SLC3A1 / Solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1
SLC3A2 / Solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
PHKA1 / Phosphorylase kinase, alpha 1 (muscle)
PHKA2 / Phosphorylase kinase, alpha 2 (liver)
PHKB / Phosphorylase kinase, beta
Chitinase SUBFAMILY
CHIT1 / Chitinase 1 (chitotriosidase)
CHI3L2 / Chitinase 3-like 2
CTBS / Chitobiase, di-N-acetyl-
CHID1 M / Chitinase domain containing 1
Fucosidase SUBFAMILY
FUCA1 / Tissue alpha-L-1-fucosidase
FUCA2 / Fucosidase, alpha-L- 2, plasma
Galactosidase SUBFAMILY
GLA / Alpha-galactosidase A
GLB1L / Galactosidase, beta 1-like
PPGB / Protective protein for beta-galactosidase (galactosialidosis)
GLB1L3 / Galactosidase, beta 1-like 3
GALC / Galactosylceramidase (Krabbe disease)
GLB1L2 / Galactosidase, beta 1-like 2
GALNS / Galactosamine (N-acetyl)-6-sulfate sulfatase (Morquio syndrome, mucopolysaccharidosis type IVA)
Glucosidase SUBFAMILY
GAA / Glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)
GBA / Acid beta glucosidase (includes glucosylceramidase)
G2AN / Sub unit alpha glucosidase II :
GCS1 / Glucosidase I
PRKCSH / Protein kinase C substrate 80K-H
AGL (variants 1, 2, 3, 4, 5 and 6) / Amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)
C21orf33 (isoforms 1a and 1b) / Chromosome 21 open reading frame 33, homolog of zebrafish ES1 precursor
PSAP / Prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy)
Glucuronidase SUBFAMILY
GUSB / Glucuronidase beta
HPSE / Heparanase
Glycanase SUBFAMILY
NGLY1 / N-Glycanase 1
AGA / Aspartylglucosaminidase precursor
Hexosaminidase SUBFAMILY
HEXA / Hexosaminidase A (polypeptide alpha)
HEXB / Hexosaminidase B (polypeptide beta)
GM2A / GM2 ganglioside activator protein precursor
ATHL1 / ATH1, acid trehalase-like 1 (yeast)
Hyaluronidase SUBFAMILY
HYAL2 (variants 1 et 2) / Hyaluronoglucosaminidase 2
MGEA5 / Meningioma expressed antigen 5 hyaluronidase
Iduronidase SUBFAMILY
IDUA / Iduronidase, alpha-L-
Lysozyme SUBFAMILY
LYZ / Lysozyme precursor
LYG1 / Lysozyme G-like 1
LYZL4 / Lysozyme-like 4
ARSB (isoforms 1 and 2) / Arylsulfatase B isoform 1 precursor
Mannosidase SUBFAMILY
MANEA / Endo-alpha-mannosidase
MAN1A1 / Mannosyl-oligosaccharide alpha-1, 2-mannosidase (Classe 1), mannosidase, alpha, class 1A, member 1
MAN1A2 / Mannosyl-oligosaccharide alpha-1, 2-mannosidase (Classe 1), mannosidase, alpha, class 1A, member 2
MAN1C1 / Mannosyl-oligosaccharide alpha-1, 2-mannosidase (Classe 1), mannosidase, alpha, class 1C, member 1
MAN2A1 / Mannosidase, alpha, class 2A, member 1
MAN2A2 / Mannosidase, alpha, class 2A, member 2
MAN2B1 / Mannosidase, alpha, class 2B, member 1
MAN2B2 / Mannosidase, alpha, class 2B, member 2
MAN2C1 / Mannosidase, alpha, class 2C, member 1
C20orf31 / Chromosome 20 open reading frame 31
MANBA / Mannosidase, beta A, lysosomal
MANBAL / Mannosidase, beta A, lysosomal-like
C1orf22 / Chromosome 1 open reading frame 22
Neuraminidase SUBFAMILY
NEU1 / Sialidase 1
NEU3 / Sialidase 3
KIAA1128 / KIAA1128
Other glycosydases
MUTYH / mutY (E. coli) homolog
PARG / poly (ADP-ribose) glycohydrolase
MPG / N-methylpurine-DNA glycosylase
TRANSPORTER FAMILY
UDP-GAL 6 Transporter SUBFAMILY
SLC35A2 / Solute carrier family 35 (UDP-galactose transporter), member A2
SLC35A4 / Solute carrier family 35, member A4
SLC35B1 / Solute carrier family 35, member B1
SLC35A5 / Solute carrier family 35, member A5
SLC35B2 / Solute carrier family 35, member B2
SLC35B3 / Solute carrier family 35, member B3
GDP-Fuc Transporter SUBFAMILY
SLC35C1 / Solute carrier family 35, member C1
UDP-GlcNAc/acid glu transporter SUBFAMILY
SLC35D1 / Solute carrier family 35 (UDP-glucuronic acid/UDP-N- acetylgalactosamine dual transporter), member D1
SLC35A3 / Solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3
SLC35B4 / Solute carrier family 35, member B4
SLC35D2 / Solute carrier family 35, member D2
Glc-6-P/P antiporter SUBFAMILY
SLC35E1 / Solute carrier family 35, member E1
SLC35E2 (variant 1) / Solute carrier family 35, member E2
SLC35E2 (variant 2) / Solute carrier family 35, member E2
SLC35E3 / Solute carrier family 35, member E3
"Other transporters"
SLC35C2 (isoforms a and b) / Solute carrier family 35, member C2, ovarian cancer overexpressed
SLC35F2 / Solute carrier family 35, member F2
SLC35F5 / Solute carrier family 35, member F5
SLC43A1 / Solute carrier family 43, member 1
SLC43A3 / Solute carrier family 43, member 3
SV2C / Synaptic vesicle glycoprotein 2C
PRUNE2 / prune homolog 2 (Drosophila)
Glucose transporter SUBFAMILY
SLC2A1 / Solute carrier family 2 (facilitated glucose transporter), member 1
SLC2A3 / Solute carrier family 2 (facilitated glucose transporter), member 3
SLC2A4RG / SLC2A4 regulator
SLC2A5 / Solute carrier family 2 (facilitated glucose/fructose transporter), member 5
SLC2A6 / Solute carrier family 2 (facilitated glucose transporter), member 6
SLC2A8 / Solute carrier family 2, (facilitated glucose transporter) member 8
SLC2A9 / Solute carrier family 2 (facilitated glucose transporter), member 9
SLC2A11 / Solute carrier family 2 (facilitated glucose transporter), member 11
SLC2A13 / Solute carrier family 2 (facilitated glucose transporter), member 13
SLC5A11 / Solute carrier family 5 (sodium/glucose cotransporter), member 11
Inositol transporter SUBFAMILY
SLC5A3 / Solute carrier family 5 (inositol transporters), member 3
SLC5A6 / Solute carrier family 5 (sodium-dependent vitamin transporter), member 6
PIPTN / Phosphotidylinositol transfer protein
PIPTNB / Phosphotidylinositol transfer protein, beta
PIPTNC1 (isoforms a and b) / Phosphatidylinositol transfer protein, cytoplasmic 1
PIPTNM1 / Phosphatidylinositol transfer protein, membrane-associated 1
PIPTNM2 / Phosphatidylinositol transfer protein, membrane-associated 2
SUGAR NUCLEOTIDE SYNTHESIS FAMILY
UDP-GlcNAc Synthesis SUBFAMILY
UAP1 / UDP-N-Acetylglucosamine pyrophosphorylase 1
UAP1L1 / UDP-N-Acteylglucosamine pyrophosphorylase 1-like 1
GNPNAT1 / Glucosamine-phosphate N-acetyltransferase 1
NAGK / N-Acetylglucosamine kinase
RENBP / Renin binding protein
GNPDA1 / Glucosamine-6-phosphate deaminase 1
GNPDA2 / Glucosamine-6-phosphate deaminase 2
GDP-Mannose Synthesis SUBFAMILY
MPI / Mannose phosphate isomerase
PMM1 / Phosphomannomutase 1
PMM2 / Phosphomannomutase 2
GMPPA / GDP-mannose pyrophosphorylase A
GMPPB (isoforms 1 and 2) / GDP-mannose pyrophosphorylase B
GMDS / GDP-mannose 4,6-dehydratase
GDP-Fucose Synthesis SUBFAMILY
TSTA3 / Tissue specific transplantation antigen P35B
FUK / Fucokinase
FPGT / Fucose-1-phosphate guanylyltransferase
GDP-Glc Synthesis SUBFAMILY
PGM1 / Phosphoglucomutase 1
PGM2 / Phosphoglucomutase 2
GPI / Glucose phosphate isomerase
UGP2 / UDP-Glucose pyrophosphorylase 2
NUDT14 / Nudix (nucleoside diphosphate linked moiety X)-type motif 14
UGDH / UDP-Glucose dehydrogenase
GPR105 / G Protein-coupled receptor 105
H6PD / Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
GFPT1 / Glutamine-fructose-6-phosphate transaminase 1, glucosamine-fructose-6-phosphate aminotransferase
HK1 (isoforms HK1, HK1-R, HK1-ta/tb, HK1-td ) / Hexokinase 1
HK2 / Hexokinase 2
HK3 / Hexokinase 3
HKDC1 / Hexokinase domain containing 1
CMP-NeuAc Synthesis SUBFAMILY
CMAS / cytidine 5'-monophosphate N-acetylneuraminic acid synthetase
NANS / N-acetylneuraminic acid synthase (sialic acid synthase)
UDP-Gal Synthesis SUBFAMILY
GALE / UDP-Galactose-4-epimerase
GALK1 / Galactokinase 1
GALK2 / Galactokinase 2
GALT (isoforms 1, 2 and 3) / Galactose-1-phosphate uridylyltransferase
GALM / Galactose mutarotase (aldose 1-epimerase)
UDP-Glucuro Synthesis SUBFAMILY
UXS1 / UDP-Glucuronate decarboxylase 1
GLCE / Glucuronyl C5-epimerase
HOUSE KEEPING GENES/ENDOGENOUS CONTROLS
TFIID / B-TFIID transcription factor-associated
G6PD / Glucose-6-phosphate dehydrogenase
ACTB / B Actin
ABL1 (isoforms 1 and 2) / v-abl Abelson murine leukemia viral oncogene homolog 1
GAPDH / Glyceraldehyde-3-phosphate dehydrogenase

2- List of the 96 glycosylation-related genes for which no expression was detected in CD4 T lymphoblasts.