Table S1. Putative Function of Transcripts Up-Regulated by Cold-Induced Bud Dormancy Release

Table S1. Putative function of transcripts up-regulated by cold-induced bud dormancy release in Doritaenopsis leaves.

Functional annotation
Name / Accession / Putative function / Database / E value / Fraction / Hit Acc / Hit name
Phytochrome signaling
DhSL-336 / HO212773 / phytochrome A signal transduction 1 / TAIR / 2.60E-49 / 1.00 / AT5G48150 / PAT1
DhSL-112 / HO212549 / GIGANTEA / TAIR / 1.20E-49 / 0.95 / AT1G22770 / GI
Ca2+ signalling (Ca2+ transporter, calmodulins and calmodulin binding proteins)
DhSL-525 / HO212962 / Ca2+-ATPase / UniProtKB / 2.00E-33 / Q4PKC7 / Q4PKC7_ORYSI
DhSL-70 / HO212507 / Ca2+:H+ antiporter / TAIR / 3.90E-61 / 1.00 / AT2G38170 / CAX1
DhSL-424 / HO212861 / calmodulin / TAIR / 9.40E-59 / 0.91 / AT3G56800 / CAM3
DhSL-143 / HO212580 / 26S proteasome regulatory subunit / TAIR / 3.90E-98 / 0.98 / AT5G23540
DhSL-611 / HO213048 / photosystem I reaction center subunit / UniProtKB / 5.00E-32 / B9SKW9 / B9SKW9_RICCO
DhSL-107 / HO212544 / elongation factor EF-1 alpha subunit [EC:3.6.5] / TAIR / 2.60E-96 / 0.77 / AT1G07940 / EF-1
DhSL-301 / HO212738 / elongation factor / TAIR / 4.60E-31 / 1.00 / AT1G07940 / elongation factor
DhSL-548 / HO212985 / peptidylprolyl isomerase [EC:5.2.1.8] / TAIR / 2.20E-66 / 0.99 / AT3G25230 / ROF1
DhSL-585 / HO213022 / chaperone / TAIR / 2.50E-32 / 1.00 / AT5G20720 / CPN20
DhSL-27 / HO212464 / CBL-interacting protein kinase / TAIR / 6.40E-79 / 0.98 / AT4G18700 / CIPK12
DhSL-480 / HO212917 / CBL-interacting protein kinase / UniProtKB / 2.00E-32 / A5BKH1 / A5BKH1_VITVI
Cytoskeleton/chromatine remodeling
DhSL-50 / HO212487 / actin / TAIR / 2.00E-103 / 0.85 / AT5G09810 / ACT7
DhSL-561 / HO212998 / actin / TAIR / 1.60E-52 / 0.94 / AT5G09810 / ACT7
DhSL-153 / HO212590 / tubulin alpha / TAIR / 5.10E-82 / 1.00 / AT5G19780 / TUA5
DhSL-508 / HO212945 / tubulin alpha / TAIR / 5.50E-40 / 0.84 / AT1G64740 / TUA1
DhSL-519 / HO212956 / tubulin alpha / TAIR / 4.60E-99 / 1.00 / AT5G19780 / TUA5
DhSL-291 / HO212728 / tubulin beta / TAIR / 3.10E-106 / 1.00 / AT5G62690 / TUB2
DhSL-460 / HO212897 / tubulin beta / TAIR / 2.30E-56 / 1.00 / AT5G62700 / B3TNK7_9LILI
DhSL-492 / HO212929 / SUN1 / TAIR / 2.10E-44 / 0.91 / AT5G04990 / SUN1
Oxidative stress response
DhSL-348 / HO212785 / glutathione S-transferase / TAIR / 3.80E-30 / 0.84 / AT5G41210 / ATGSTT1
DhSL-72 / HO212509 / L-ascorbate peroxidase [EC:1.11.11] / TAIR / 1.80E-64 / 0.97 / AT4G35000 / APX3
DhSL-79 / HO212516 / peroxidase / UniProtKB / 5.00E-28 / A0S7R2 / A0S7R2_ONCHC
DhSL-273 / HO212710 / peroxidase / UniProtKB / 2.00E-46 / A0S7R2 / A0S7R2_ONCHC
DhSL-461 / HO212898 / peroxiredoxin / UniProtKB / 4.00E-60 / B3TNK7
DhSL-61 / HO212498 / catalase [EC:1.11.1] / TAIR / 2.40E-52 / 0.88 / AT4G35090 / CAT2
DhSL-321 / HO212758 / catalase [EC:1.11.1] / TAIR / 4.60E-46 / 0.94 / AT4G35090 / CAT2
DhSL-100 / HO212537 / thioredoxin h / UniProtKB / 1.00E-20 / B8ALD1 / B8ALD1_ORYSI
DhSL-296 / HO212733 / thioredoxin h / UniProtKB / 7.00E-39 / B9GRI3 / B9GRI3_POPTR
DhSL-431 / HO212868 / protein disulfide-isomerase / TAIR / 1.10E-70 / 0.96 / AT2G47470 / UNE5
DhSL-48 / HO212485 / methionine sulfoxide reductase [EC:1.8.4.11] / TAIR / 1.50E-39 / 1.00 / AT4G25130
DhSL-548 / HO212985 / peptidylprolyl isomerase [EC:5.2.1.8] / TAIR / 2.20E-66 / 0.99 / AT3G25230 / ROF1
DhSL-584 / HO213021 / peptidylprolyl isomerase [EC:5.2.1.8] / UniProtKB / 1.00E-28 / A7DX09 / A7DX09_LOTJA
DhSL-96 / HO212533 / chaperone / TAIR / 1.40E-46 / 0.99 / AT3G48870
DhSL-101 / HO212538 / heat shock protein 70 / TAIR / 1.20E-101 / 1.00 / AT5G02500 / HSC70-1
DhSL-159 / HO212596 / chaperone / TAIR / 1.30E-62 / 0.81 / AT5G56010 / HSP81-3
DhSL-179 / HO212616 / heat shock protein / UniProtKB / 2.00E-24 / B9N758 / B9N758_POPTR
DhSL-284 / HO212721 / heat shock protein / UniProtKB / 2.00E-29 / B9N758 / B9N758_POPTR
DhSL-422 / HO212859 / heat shock protein 70 / TAIR / 7.40E-138 / 1.00 / AT5G02500 / HSC70-1
DhSL-488 / HO212925 / heat shock protein 70 / TAIR / 2.70E-89 / 0.99 / AT5G02500 / HSC70-1
DhSL-530 / HO212967 / chaperone / TAIR / 9.10E-55 / 0.96 / AT5G56010
DhSL-551 / HO212988 / heat shock protein / TAIR / 6.00E-35 / 0.89 / AT5G49910
DhSL-585 / HO213022 / chaperone / TAIR / 2.50E-32 / 1.00 / AT5G20720 / CPN20
Chromatin remodeling
DhSL-246 / HO212683 / FVE / TAIR / 8.00E-30 / 0.90 / AT2G19520 / FVE
DhSL-85 / HO212522 / histone H3 / UniProtKB / 5.00E-63 / Q7DMP7 / Q7DMP7_MEDSA
DhSL-337 / HO212774 / histone H2A / NCBI nt / 1.00E-29 / NM_104344.2
DhSL-92 / HO212529 / arginine N-methyl transferase / TAIR / 2.20E-47 / 0.97 / AT3G06930 / PRMT4B
Sucrose and starch metabolism
DhSL-211 / HO212648 / alpha-glucan, water dikinase [EC:2.7.9] / TAIR / 5.00E-55 / 1.00 / AT1G10760 / SEX1
DhSL-559 / HO212996 / glucan endo-1,3-beta-glucosidase / UniProtKB / 2.00E-28 / Q6NKW9 / E138_ARATH
DhSL-450 / HO212887 / phosphoacetylglucosamine mutase [EC:5.4.2.3] / UniProtKB / 3.00E-39 / Q6ZDQ1 / AGM1_ORYSJ
DhSL-8 / HO212445 / mannose-1-phosphate guanylyltransferase [EC:2.7.7.22] / TAIR / 1.70E-68 / 0.73 / AT2G39770 / CYT1
DhSL-287 / HO212724 / UDP-glucose pyrophosphorylase / TAIR / 3.90E-68 / 0.99 / AT1G74910
DhSL-98 / HO212535 / cellulose synthase [2.4.1.12] / UniProtKB / 1.00E-24 / Q2IB38 / Q2IB38_EUCGR
DhSL-285 / HO212722 / glucose-6-phosphate 1-epimerase [EC:5.1.3.15] / UniProtKB / 9.00E-43 / Q40784 / AAPC_CENCI
DhSL-602 / HO213039 / glucose-6-phosphate isomerase [EC:5.3.1.9] / TAIR / 1.10E-85 / 0.95 / AT5G42740
DhSL-376 / HO212813 / sucrose-phosphate synthase [EC:2.4.1.14] / UniProtKB / 6.00E-25 / Q0JGK4 / SPS_ORYSJ
DhSL-294 / HO212731 / sucrose-phosphatase / TAIR / 3.70E-70 / 0.99 / AT2G35840 / SPP1
DhSL-37 / HO212474 / sucrose synthase [EC:2.4.1.13] / TAIR / 1.70E-67 / 1.00 / AT5G20830 / SUS1
DhSL-229 / HO212666 / sucrose synthase [EC:2.4.1.13] / TAIR / 3.30E-59 / 0.98 / AT5G20830 / SUS1
DhSL-308 / HO212745 / sucrose synthase / TAIR / 4.80E-32 / 0.70 / AT4G02280 / SUS3
DhSL-574 / HO213011 / sucrose synthase / NCBI nt / 7.00E-126 / AF530567
DhSL-218 / HO212655 / diphosphate—fructose-6-phosphate 1-phosphotransferase [EC:2.7.1.90] / TAIR / 3.70E-75 / 0.89 / AT1G12000
DhSL-507 / HO212944 / pyrophosphate--fructose-6-phosphate 1-phosphotransferase / TAIR / 1.50E-92 / 1.00 / AT1G20950
Sugar transporters
DhSL-493 / HO212930 / vacuolar sugar transporter / TAIR / 5.80E-43 / 0.98 / AT3G03090 / VGT1
DhSL-60 / HO212497 / sucrose transporter / TAIR / 1.00E-30 / 0.72 / AT2G02860 / SUT2
DhSL-527 / HO212964 / sucrose transporter / TAIR / 2.70E-32 / 0.97 / AT2G02860 / SUT2
Glycolysis
DhSL-423 / HO212860 / fructose-bisphosphate aldolase [EC:4.1.2.13] / UniProtKB / 7.00E-51 / P17784 / ALF_ORYSJ
DhSL-510 / HO212947 / fructose-bisphosphate aldolase, class I [EC:4.1.2.13] / TAIR / 1.00E-78 / 0.78 / AT2G21330
DhSL-556 / HO212993 / fructose-bisphosphate aldolase / UniProtKB / 6.00E-28 / P17784 / ALF_ORYSJ
DhSL-364 / HO212801 / glyceraldehyde-3-phosphate dehydrogenase / NCBI nt / 9.00E-47 / AF421145
DhSL-555 / HO212992 / glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] / NCBI nt / 8.00E-63 / AF421145
DhSL-17 / HO212454 / glyceraldehyde 3-phosphate dehydrogenase / TAIR / 5.20E-33 / 0.63 / AT3G04120 / GAPC1
DhSL-51 / HO212488 / glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] / TAIR / 4.40E-102 / 0.99 / AT1G13440 / GAPC2
DhSL-426 / HO212863 / glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] / TAIR / 2.50E-102 / 0.94 / AT1G13440 / GAPC2
Light harvest
DhSL-2 / HO212439 / chloroplast light-harvesting chlorophyll a/b binding protein / NCBI nt / 2.00E-48 / L36064
DhSL-89 / HO212526 / light-harvesting complex II chlorophyll a/b binding protein / TAIR / 1.10E-92 / 0.77 / AT2G34430 / LHB1B1
DhSL-115 / HO212552 / light-harvesting complex II chlorophyll a/b binding / TAIR / 4.20E-68 / 0.89 / AT2G34430 / LHB1B1
DhSL-116 / HO212553 / light-harvesting complex II chlorophyll a/b binding / TAIR / 7.60E-77 / 0.76 / AT2G34420 / LHB1B1
DhSL-302 / HO212739 / light-harvesting complex II / NCBI nt / 5.00E-33 / EU052802
DhSL-500 / HO212937 / LHCII type I chlorophyll a/b-binding protein / UniProtKB / 8.00E-68 / C5IFT7 / C5IFT7_MANIN
DhSL-553 / HO212990 / LHCII type I chlorophyll a/b-binding protein / TAIR / 2.10E-56 / 0.86 / AT2G34430 / LHB1B1
DhSL-554 / HO212991 / LHCII type I chlorophyll a/b-binding protein / TAIR / 1.00E-43 / 1.00 / AT5G54270 / LHCB3
DhSL-25 / HO212462 / photosystem II PsbY protein / UniProtKB / 1.00E-23 / B9RMR5 / B9RMR5_RICCO
DhSL-158 / HO212595 / photosystem II reaction center / TAIR / 2.80E-32 / 0.65 / AT4G28660 / PSB28
DhSL-191 / HO212628 / photosystem II oxygen-evolving enhancer protein / TAIR / 8.80E-42 / 0.99 / AT4G05180 / PSBQ-2
DhSL-420 / HO212857 / photosystem II PsbA / TAIR / 4.90E-61 / 1.00 / ATCG00020
DhSL-588 / HO213025 / photosystem II PsbD protein / NCBI nt / 0.00E+00 / AY147662
DhSL-78 / HO212515 / light-harvesting complex I chlorophyll a/b binding protein 4 / TAIR / 1.10E-26 / 0.72 / AT3G47470 / LHCA4
DhSL-42 / HO212479 / photosystem I subunit / TAIR / 1.10E-40 / 0.71 / AT1G31330 / PSAF
DhSL-611 / HO213048 / photosystem I reaction center subunit / UniProtKB / 5.00E-32 / B9SKW9 / B9SKW9_RICCO
DhSL-29 / HO212466 / plastocyanin / UniProtKB / 2.00E-36 / Q0W9E5 / Q0W9E5_SOLCO
DhSL-414 / HO212851 / plastocyanin / UniProtKB / 6.00E-35 / P17340 / PLAS_SOLLC
Mitochondria
DhSL-121 / HO212558 / NADH dehydrogenase (ubiquinone) Fe-S [EC:1.6.5.3 1.6.99.3] / TAIR / 1.90E-33 / 0.94 / AT5G67590 / FRO1
DhSL-443 / HO212880 / inorganic pyrophosphatase [EC:3.6.1.1] / TAIR / 1.60E-82 / 1.00 / AT1G15690 / AVP1
DhSL-444 / HO212881 / vacuolar proton-inorganic pyrophosphatase / TAIR / 9.80E-54 / 1.00 / AT1G15690
DhSL-583 / HO213020 / inorganic pyrophosphatase [EC:3.6.1.1] / TAIR / 4.70E-72 / 1.00 / AT1G15690 / AVP1
DhSL-3 / HO212440 / cytochrome b5 / TAIR / 1.50E-24 / 0.68 / AT5G53560 / CB5-E
DhSL-145 / HO212582 / V-type H+-transporting ATPase subunit E [EC:3.6.3.14] / TAIR / 1.10E-62 / 0.89 / AT4G11150 / TUF
DhSL-266 / HO212703 / V-type H+-transporting ATPase subunit AC39 [EC:3.6.3.14] / TAIR / 9.10E-93 / 0.87 / AT3G28715
DhSL-269 / HO212706 / ATP synthase [EC:3.6.3.14] / TAIR / 5.60E-72 / 0.93 / AT2G33040 / ATPC
DhSL-380 / HO212817 / F-type H+-transporting ATPase [EC:3.6.3.14] / UniProtKB / 2.00E-26 / Q3BAQ6 / ATPF_PHAAO
DhSL-429 / HO212866 / F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] / TAIR / 6.80E-94 / 0.96 / AT2G33040
DhSL-454 / HO212891 / H+-transporting ATPase [EC:3.6.3.6] / TAIR / 2.90E-78 / 1.00 / AT2G18960 / AHA1
DhSL-571 / HO213008 / V-type H+-transporting ATPase subunit G [EC:3.6.3.14] / UniProtKB / 1.00E-25 / B6SI54 / B6SI54_MAIZE
Secretory machinery
DhSL-549 / HO212986 / SEC61 / TAIR / 6.30E-42 / 0.99 / AT1G78720
DhSL-255 / HO212692 / SEC22 / UniProtKB / 3.00E-45 / B6TID8 / B6TID8_MAIZE
DhSL-260 / HO212697 / SEC23 / TAIR / 7.00E-48 / 0.96 / AT5G43670
DhSL-166 / HO212603 / ras/rab family / TAIR / 2.00E-38 / 0.80 / AT1G56330 / ATSAR1B
DhSL-589 / HO213026 / ras/rab family / TAIR / 2.40E-37 / 0.72 / AT1G56330 / ATSAR1B
DhSL-490 / HO212927 / ras/rab family / UniProtKB / 3.00E-53 / B3TLR9 / B3TLR9_ELAGV
DhSL-541 / HO212978 / ras/rab family / UniProtKB / 2.70E-72 / 0.83 / AT5G59150 / ATRABA2D
DhSL-535 / HO212972 / ras/rab family / UniProtKB / 9.00E-59 / Q9SN35 / Q9SN35_ARATH
DhSL-221 / HO212658 / secretory carrier membrane / TAIR / 1.40E-36 / 1.00 / AT1G32050 / SCAMP
DhSL-547 / HO212984 / secretory protein / TAIR / 1.70E-67 / 1.00 / AT1G75850 / VPS35B
C4 carbon fixation
DhSL-473 / HO212910 / phosphoenolpyruvate carboxylase [EC:4.1.1.31] / TAIR / 9.10E-107 / 1.00 / AT3G14940 / ATPPC3
DhSL-243 / HO212680 / pyruvate orthophosphate dikinase [EC:2.7.9.1] / TAIR / 1.00E-77 / 0.97 / AT4G15530 / PPDK
DhSL-399 / HO212836 / pyruvate kinase / TAIR / 2.30E-119 / 1.00 / AT5G52920 / PKP-BETA1
DhSL-612 / HO213049 / pyruvate orthophosphate dikinase [EC:2.7.9.1] / TAIR / 3.60E-62 / 1.00 / AT4G15530 / PPDK
DhSL-77 / HO212514 / malate dehydrogenase (decarboxylating) [EC:1.1.1.39] / TAIR / 3.80E-38 / 0.97 / AT2G13560
DhSL-360 / HO212797 / malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) / TAIR / 1.40E-36 / 1.00 / AT5G11670 / ATNADP-ME2
DhSL-10 / HO212447 / malate dehydrogenase [EC:1.1.1.37] / TAIR / 8.50E-73 / 0.88 / AT1G04410
DhSL-165 / HO212602 / malate dehydrogenase [EC:1.1.1.37] / UniProtKB / 2.00E-81 / Q6YWL3 / Q6YWL3_ORYSJ
Citrate cycle
DhSL-10 / HO212447 / malate dehydrogenase [EC:1.1.1.37] / TAIR / 8.50E-73 / 0.88 / AT1G04410
DhSL-77 / HO212514 / malate dehydrogenase (decarboxylating) [EC:1.1.1.39] / TAIR / 3.80E-38 / 0.97 / AT2G13560
DhSL-165 / HO212602 / malate dehydrogenase [EC:1.1.1.37] / UniProtKB / 2.00E-81 / Q6YWL3 / Q6YWL3_ORYSJ
DhSL-95 / HO212532 / aconitate hydratase [EC:4.2.1.3] / TAIR / 1.80E-34 / 0.96 / AT4G35830
DhSL-32 / HO212469 / isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] / TAIR / 1.70E-31 / 0.73 / AT3G09810
DhSL-307 / HO212744 / isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] / NCBI nt / 4.00E-41 / Y14432
DhSL-194 / HO212631 / dihydrolipoyl dehydrogenase [EC:1.8.1.4] / TAIR / 2.00E-49 / 0.91 / AT3G16950 / LPD1
DhSL-314 / HO212751 / dihydrolipoyl dehydrogenase [EC:1.8.1.4] / TAIR / 1.60E-84 / 0.99 / AT3G17240
Amino acid synthesis
DhSL-111 / HO212548 / alanine transaminase [EC:2.6.1.2] / TAIR / 1.70E-95 / 1.00 / AT1G72330 / ALAAT2
DhSL-408 / HO212845 / alanine aminotransferase / TAIR / 3.70E-39 / 0.77 / AT1G70580 / AOAT2
DhSL-433 / HO212870 / phosphoserine phosphatase [EC:3.1.3.3] / TAIR / 2.00E-53 / 0.91 / AT1G18640 / PSP
DhSL-71 / HO212508 / glycine hydroxymethyltransferase [EC:2.1.2.1] / TAIR / 3.00E-42 / 0.87 / AT5G26780 / SHM2
DhSL-377 / HO212814 / glycine hydroxymethyltransferase [EC:2.1.2.1] / TAIR / 4.80E-56 / 1.00 / AT5G26780 / SHM2
DhSL-258 / HO212695 / cysteine synthase A [EC:2.5.1.47] / TAIR / 2.40E-88 / 0.77 / AT4G14880 / OASA1
DhSL-188 / HO212625 / 24-methylenesterol C-methyltransferase [EC:2.1.1.143] / TAIR / 7.00E-32 / 0.96 / AT1G20330 / SMT2
DhSL-52 / HO212489 / glycine dehydrogenase [EC:1.4.4.2] / TAIR / 1.70E-84 / 1.00 / AT4G33010 / GLDP1
DhSL-150 / HO212587 / S-adenosylmethionine synthetase [EC:2.5.1.6] / TAIR / 2.60E-56 / 1.00 / AT3G17390 / MTO3
DhSL-421 / HO212858 / biotin synthetase [EC:2.8.1.6] / UniProtKB / 1.00E-40 / P54967 / BIOB_ARATH
Amino acid transporter
DhSL-403 / HO212840 / amino acid transporter / TAIR / 1.40E-67 / 0.86 / AT2G01170 / BAT1
Ethylene synthesis
DhSL-150 / HO212587 / S-adenosylmethionine synthetase [EC:2.5.1.6] / TAIR / 2.60E-56 / 1.00 / AT3G17390 / MTO3
DhSL-421 / HO212858 / biotin synthetase [EC:2.8.1.6] / UniProtKB / 1.00E-40 / P54967 / BIOB_ARATH
DhSL-216 / HO212653 / ethylene overproducer / TAIR / 6.90E-64 / 1.00 / AT4G02680 / EOL1
DhSL-72 / HO212509 / L-ascorbate peroxidase [EC:1.11.11] / TAIR / 1.80E-64 / 0.97 / AT4G35000 / APX3
Lipid synthesis
DhSL-244 / HO212681 / glycerol-3-phosphatase 1 / TAIR / 8.40E-30 / 0.86 / AT4G25840 / GPP1
DhSL-333 / HO212770 / 1,2-diacylglycerol 3-beta-galactosyltransferase [EC:2.4.1.46] / TAIR / 1.50E-70 / 1.00 / AT4G31780 / MGD1
DhSL-478 / HO212915 / glycerol-3-phosphate acyltransferase [EC:2.3.1.15] / TAIR / 1.40E-43 / 0.86 / GPAT6
DhSL-81 / HO212518 / 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] / TAIR / 1.40E-40 / 0.81 / AT1G24360
DhSL-88 / HO212525 / long-chain-alcohol O-fatty-acyltransferase [2.3.1.75] / UniProtKB / 1.00E-20 / Q93ZR6 / WSD1_ARATH
DhSL-161 / HO212598 / acyl-CoA oxidase [EC:1.3.3.6] / TAIR / 4.90E-52 / 0.98 / AT2G35690 / ACX5
DhSL-245 / HO212682 / fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.-] / TAIR / 8.80E-63 / 1.00 / AT1G08510 / FATB
DhSL-249 / HO212686 / enoyl-CoA hydratase [EC:4.2.1.17] / TAIR / 2.50E-43 / 1.00 / AT4G16210 / ECHIA
DhSL-499 / HO212936 / enoyl reductase [EC:1.3.1.-] / TAIR / 8.00E-60 / 0.93 / AT3G55360 / CER10
DhSL-482 / HO212919 / [acyl-carrier-protein] malonyltransferase / UniProtKB / 3.00E-37 / Q10MS3 / Q10MS3_ORYSJ
DhSL-45 / HO212482 / acetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2, 6.3.4.14] / TAIR / 1.20E-110 / 1.00 / AT1G36180 / ACC2
DhSL-174 / HO212611 / acetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2, 6.3.4.14] / TAIR / 4.10E-89 / 0.99 / AT5G35360 / CAC2
Jasmonate synthesis
DhSL-326 / HO212763 / lipoxygenase [EC:1.13.11.12] / TAIR / 2.30E-55 / 0.99 / AT3G22400 / LOX5
DhSL-451 / HO212888 / lipoxygenase [EC:1.13.11.12] / TAIR / 1.40E-54 / 1.00 / AT1G55020 / LOX1
DhSL-161 / HO212598 / acyl-CoA oxidase [EC:1.3.3.6] / TAIR / 4.90E-52 / 0.98 / AT2G35690 / ACX5
DhSL-362 / HO212799 / jasmonate-amido synthetase / TAIR / 7.50E-36 / 0.81 / AT2G46370 / JAR1
Auxin related
DhSL-466 / HO212903 / beta-cyano-L-alanine hydratase/nitrilase [EC:3.5.5.1 3.5.5] / TAIR / 3.50E-46 / 0.78 / AT5G22300 / NIT4
DhSL-467 / HO212904 / IAA hydrolase / TAIR / 3.10E-34 / 0.90 / AT1G51760 / IAR3
DhSL-176 / HO212613 / pyrophosphatase / TAIR / 1.30E-31 / 0.88 / AT1G15690 / AVP1
DhSL-62 / HO212499 / sterol 24-C-methyltransferase [EC:2.1.1.41] / TAIR / 2.90E-35 / 1.00 / AT5G13710 / SMT1
DhSL-188 / HO212625 / 24-methylenesterol C-methyltransferase [EC:2.1.1.143] / TAIR / 7.00E-32 / 0.96 / AT1G20330 / SMT2
DhSL-453 / HO212890 / SCL21 / TAIR / 2.80E-57 / 1.00 / AT2G04890 / SCL21
DhSL-592 / HO213029 / auxin response factor / UniProtKB / 1.00E-59 / A3B9A0 / ARFP_ORYSJ
DhSL-53 / HO212490 / ubiquitin carboxyl-terminal hydrolase L5 [EC:3.4.19.12] / TAIR / 7.90E-62 / 1.00 / AT1G65650 / UCH2
Abscissic acid related
DhSL-289 / HO212726 / transcription factor / TAIR / 1.60E-30 / 0.75 / AT5G63320 / NPX1
Other transcripts described in the metabolic pathway Figure S1
DhSL-457 / HO212894 / myo-inositol-1-phosphate synthase [EC:5.5.1.4] / TAIR / 1.50E-109 / 1.00 / AT4G39800 / MIPS1
DhSL-192 / HO212629 / chitinase [EC:3.2.1.14] / UniProtKB / 5.00E-30 / C1K2E8 / C1K2E8_ELAOL
DhSL-537 / HO212974 / chitinase / TAIR / 2.10E-76 / 0.91 / AT1G05850 / POM1
DhSL-389 / HO212826 / transaldolase [EC:2.2.1.2] / TAIR / 2.60E-55 / 0.97 / AT5G13420
DhSL-226 / HO212663 / pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] / TAIR / 8.30E-42 / 0.95 / AT5G50850 / MAB1
DhSL-382 / HO212819 / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.27] / TAIR / 4.90E-76 / 0.97 / AT2G14170 / ALDH6B2
DhSL-462 / HO212899 / malonate-semialdehyde dehydrogenase / TAIR / 2.90E-45 / 1.00 / AT2G14170 / ALDH6B2
DhSL-464 / HO212901 / aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] / TAIR / 5.20E-72 / 0.99 / AT1G23800 / ALDH2B7
DhSL-504 / HO212941 / rhamnose synthase / UniProtKB / 3.00E-61 / Q9SYM5 / RHM1_ARATH
DhSL-55 / HO212492 / UDP-glucose 6-dehydrogenase [EC:1.1.1.22] / TAIR / 1.50E-81 / 0.77 / AT3G29360
DhSL-133 / HO212570 / pectinesterase [3.1.1.11] / UniProtKB / 1.00E-43 / A0FHC0 / A0FHC0_LYCAU
DhSL-375 / HO212812 / alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] / UniProtKB / 2.00E-29 / Q9ZVI7 / GAUT7_ARATH
DhSL-217 / HO212654 / UDP-glucuronate decarboxylase [EC:4.1.1.35] / TAIR / 5.10E-82 / 0.96 / AT1G08200 / AXS2
DhSL-228 / HO212665 / UDP-glucuronate decarboxylase [EC:4.1.1.35] / TAIR / 3.40E-31 / 0.95 / AT3G46440 / UXS5
DhSL-207 / HO212644 / glutamate--ammonia ligase [EC:6.3.1.2] / TAIR / 1.40E-30 / 0.98 / AT5G16570 / GLN1
DhSL-281 / HO212718 / glutamine synthetase [EC:6.3.1.2] / TAIR / 7.60E-47 / 1.00 / AT5G16570 / GLN1
DhSL-34 / HO212471 / 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] / TAIR / 5.70E-51 / 0.76 / AT5G64300 / ATGCH
DhSL-317 / HO212754 / hydrolase / TAIR / 3.30E-35 / 1.00 / AT3G48420
DhSL-19 / HO212456 / (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] / TAIR / 3.50E-49 / 0.91 / AT3G14420
DhSL-131 / HO212568 / ribulose-bisphosphate carboxylase [EC:4.1.1.39] / TAIR / 2.20E-31 / 1.00 / AT2G39730 / RCA
DhSL-193 / HO212630 / ribulose-bisphosphate carboxylase [EC:4.1.1.39] / UniProtKB / 3.00E-36 / Q2QTK0 / Q2QTK0_ORYSJ
DhSL-396 / HO212833 / glycerate dehydrogenase / TAIR / 2.40E-84 / 1.00 / AT1G68010 / HPR
DhSL-305 / HO212742 / aminomethyltransferase [EC:2.1.2.10] / TAIR / 1.70E-52 / 0.98 / AT1G11860
DhSL-280 / HO212717 / S-adenosylmethionine decarboxylase [EC:4.1.1.50] / NCBI nt / 0.00E+00 / AF420239
DhSL-413 / HO212850 / arginine decarboxylase [EC:4.1.1.19] / TAIR / 1.10E-42 / 0.99 / AT2G16500 / ADC1
DhSL-572 / HO213009 / arginine decarboxylase [EC:4.1.1.19] / TAIR / 2.20E-77 / 1.00 / AT4G34710 / ADC2
DhSL-93 / HO212530 / homospermidine synthase [2.5.1.44] / TAIR / 7.20E-38 / 0.99 / AT5G05920 / DHS
DhSL-590 / HO213027 / deoxyhypusine synthase / TAIR / 6.50E-97 / 0.95 / AT5G05920 / DHS
Other transcript discussed in the text
DhSL-224 / HO212661 / transcription factor / TAIR / 2.20E-47 / 0.99 / AT2G23760 / BLH4
Other transcripts discovered in this study
DhSL-1 / HO212438 / 26S ribosomal RNA / NCBI nt / 2.00E-171 / AY095460
DhSL-5 / HO212442 / serine/threonine protein phosphatase / TAIR / 4.70E-86 / 1.00 / AT3G21650 / PP2A
DhSL-6 / HO212443 / serine-type carboxypeptidase/ sinapoyltransferase / UniProtKB / 7.00E-72 / B6TC80 / B6TC80_MAIZE
DhSL-7 / HO212444 / DNA topoisomerase / TAIR / 3.00E-43 / 1.00 / AT5G02820 / RHL2
DhSL-11 / HO212448 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AF036490
DhSL-16 / HO212453 / WD40-like beta propeller repeat protein family / TAIR / 5.60E-35 / 0.99 / AT1G21680
DhSL-20 / HO212457 / sodium-dicarboxylate cotransporter / UniProtKB / 3.00E-38 / B9HCT6 / B9HCT6_POPTR
DhSL-21 / HO212458 / chloroplast 23S ribosomal RNA / TAIR / 1.20E-205 / 1.00 / ATCG01180
DhSL-22 / HO212459 / mitochondrial 26S ribosomal RNA / TAIR / 8.60E-95 / 1.00 / ATMG00020
DhSL-26 / HO212463 / ribosomal protein L9e / TAIR / 1.40E-40 / 0.78 / AT4G10450
DhSL-28 / HO212465 / pentatricopeptide (PPR) repeat-containing protein / TAIR / 1.20E-43 / 0.93 / AT2G31400 / GUN1
DhSL-33 / HO212470 / 26S ribosomal RNA/cytochrome P450 like / NCBI nt / 0.00E+00 / AF389249
DhSL-35 / HO212472 / microsatellite / NCBI nt / 4.00E-150 / DQ866722
DhSL-38 / HO212475 / amine oxidase / TAIR / 8.90E-54 / 0.93 / AT1G31690
DhSL-43 / HO212480 / aspartic proteinase [3.4.23.12] / UniProtKB / 6.00E-39 / B9SA95 / B9SA95_RICCO
DhSL-46 / HO212483 / kinase / TAIR / 2.30E-31 / 1.00 / AT2G27060
DhSL-47 / HO212484 / triacylglycerol lipase / TAIR / 7.80E-31 / 0.93 / AT1G56630
DhSL-49 / HO212486 / phospholipid transfer protein / NCBI nt / 7.00E-85 / AF198168
DhSL-54 / HO212491 / 40S ribosomal protein S27 / UniProtKB / 5.00E-35 / B9RG16 / B9RG16_RICCO
DhSL-56 / HO212493 / ethylene insensitive / UniProtKB / 6.00E-41 / Q6JN48 / Q6JN48_MAIZE
DhSL-58 / HO212495 / serine/threonine protein kinase / UniProtKB / 2.00E-22 / C3SA69 / C3SA69_BRADI
DhSL-59 / HO212496 / methionyl aminopeptidase [EC:3.4.11.18] / TAIR / 1.60E-46 / 0.71 / MAP1C
DhSL-64 / HO212501 / chloroplast 23S ribosomal RNA / TAIR / 8.20E-125 / 1.00 / ATCG00950
DhSL-65 / HO212502 / chloroplast 23S ribosomal RNA / TAIR / 2.60E-112 / 1.00 / ATCG00950
DhSL-66 / HO212503 / receptor-like protein kinase / UniProtKB / 1.00E-47 / Q9LKZ6 / Q9LKZ6_SOYBN
DhSL-67 / HO212504 / dehydration-responsive family protein / TAIR / 3.40E-30 / 1.00 / AT1G33170
DhSL-75 / HO212512 / regulator of chromosome condensation / TAIR / 4.00E-43 / 0.73 / AT3G26100 / RCC1
DhSL-76 / HO212513 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / EU433932
DhSL-82 / HO212519 / cysteine peptidase [response to dehydratation] / TAIR / 9.50E-90 / 0.91 / AT4G39090 / RD19
DhSL-87 / HO212524 / lipase / TAIR / 1.30E-34 / 0.73 / AT3G16370
DhSL-90 / HO212527 / mitochondrial 26S ribosomal RNA / NCBI nt / 0.00E+00 / AF389257
DhSL-91 / HO212528 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / DQ008633
DhSL-94 / HO212531 / pre-mRNA-processing factor 39 / UniProtKB / 6.00E-54 / B9SKM7 / B9SKM7_RICCO
DhSL-97 / HO212534 / chloroplast protein translocon component / TAIR / 1.50E-50 / 0.70 / AT5G16620 / TIC40
DhSL-99 / HO212536 / zinc finger protein / TAIR / 4.10E-60 / 0.70 / AT1G11020
DhSL-102 / HO212539 / 60S ribosomal protein / TAIR / 2.10E-31 / 1.00 / AT1G05190
DhSL-103 / HO212540 / serine/threonine phosphatase / TAIR / 7.00E-44 / 0.91 / AT5G63140 / ATPAP29
DhSL-104 / HO212541 / glycylpeptide N-tetradecanoyltransferase [EC:2.3.1.97] / UniProtKB / 8.00E-73 / Q8LR54 / Q8LR54_ORYSJ
DhSL-105 / HO212542 / aquaporin / NCBI nt / 3.00E-67 / NTU62280
DhSL-106 / HO212543 / pyruvate dehydrogenase kinase [EC:2.7.11.2] / TAIR / 9.40E-45 / 0.76 / AT3G06483 / PDK
DhSL-108 / HO212545 / aquaporin / TAIR / 4.70E-24 / 0.90 / AT4G23400 / PIP1
DhSL-113 / HO212550 / beta-galactosidase [3.2.1.23] / TAIR / 3.10E-40 / 0.97 / AT4G36360 / BGAL3
DhSL-114 / HO212551 / 60S ribosomal protein L10 / UniProtKB / 4.00E-38 / Q9SPB3 / RL10_VITRI
DhSL-117 / HO212554 / ADP-ribosylation factor GTPase-activating / UniProtKB / 1.00E-42 / Q84PA3 / Q84PA3_ORYSJ
DhSL-118 / HO212555 / 60S ribosomal protein L23 / NCBI nt / 1.00E-47 / FJ915828
DhSL-119 / HO212556 / aquaporin / NCBI nt / 1.00E-75 / AY995196
DhSL-120 / HO212557 / ubiquitin / NCBI nt / 1.00E-36 / AF502575
DhSL-123 / HO212560 / proteinase / UniProtKB / 2.00E-32 / B6TP02 / B6TP02_MAIZE
DhSL-126 / HO212563 / ubiquitin-conjugating enzyme E2 I [EC:6.3.2.19] / TAIR / 1.90E-42 / 0.72 / AT3G57870 / SCE1
DhSL-127 / HO212564 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AY095450
DhSL-128 / HO212565 / ethylene-insensitive protein / UniProtKB / 6.00E-33 / Q9S814 / EIN2_ARATH
DhSL-129 / HO212566 / ketol-acid reductoisomerase [EC:1.1.1.86] / TAIR / 3.80E-63 / 0.97 / AT3G58610
DhSL-130 / HO212567 / mitochondrial 26S ribosomal RNA / TAIR / 4.70E-103 / 0.96 / ATMG00020
DhSL-135 / HO212572 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AY095450
DhSL-136 / HO212573 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AY095472
DhSL-137 / HO212574 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AY095460
DhSL-138 / HO212575 / charged multivesicular body protein 2B / UniProtKB / 6.00E-33 / B6T5E0 / B6T5E0_MAIZE
DhSL-139 / HO212576 / mitochondrial 26S ribosomal RNA / NCBI nt / 0.00E+00 / AF036490
DhSL-140 / HO212577 / mitochondrial 26S ribosomal RNA / NCBI nt / 0.00E+00 / AF036490
DhSL-141 / HO212578 / 23S ribosomal RNA / NCBI nt / 0.00E+00 / AY082604
DhSL-144 / HO212581 / mitochondrial 26S ribosomal RNA / NCBI nt / 0.00E+00 / EU433932
DhSL-149 / HO212586 / ribosomal RNA / TAIR / 1.60E-79 / 0.98 / AT3G41768
DhSL-151 / HO212588 / mitochondrial 26S ribosomal RNA / TAIR / 5.00E-91 / 0.98 / ATMG00020
DhSL-162 / HO212599 / DNA-directed RNA polymerase II subunit B [EC:2.7.7.6] / TAIR / 2.80E-63 / 0.99 / AT4G21710 / NRPB2
DhSL-163 / HO212600 / ubiquitin-protein ligase [EC:6.3.2.19] / TAIR / 5.50E-55 / 0.61 / AT5G25760 / PEX4
DhSL-168 / HO212605 / transcriptional repressor / UniProtKB / 2.00E-29 / D7M9E9 / D7M9E9_ARALY
DhSL-169 / HO212606 / arsenite-transporting ATPase [EC:3.6.3.16] / UniProtKB / 6.00E-46 / A6MCZ4 / A6MCZ4_9ORYZ
DhSL-170 / HO212607 / thiazole biosynthetic / TAIR / 3.00E-49 / 0.89 / AT5G54770 / THI1
DhSL-172 / HO212609 / cytochrome P450 / UniProtKB / 3.00E-23 / B2BAK4 / B2BAK4_LILLO
DhSL-173 / HO212610 / pre-mRNA-splicing factor RBM22/SLT11 / UniProtKB / 1.00E-26 / B6U0G4 / B6U0G4_MAIZE
DhSL-175 / HO212612 / protein-L-isoaspartate(D-aspartate) O-methyltransferase / UniProtKB / 5.00E-33 / C6T834 / C6T834_SOYBN
DhSL-180 / HO212617 / ERECTA / TAIR / 4.50E-60 / 1.00 / AT2G26330 / ER
DhSL-182 / HO212619 / 26S ribosomal RNA / NCBI nt / 5.00E-101 / AY095461
DhSL-183 / HO212620 / ABC transporter / TAIR / 1.60E-68 / 0.77 / AT5G60790 / ATGCN1
DhSL-189 / HO212626 / protein kinase / TAIR / 5.30E-54 / 0.76 / AT5G10290
DhSL-196 / HO212633 / ankyrin-like protein [dehydration-responsive protein-related] / TAIR / 1.20E-40 / 0.78 / AT1G29470
DhSL-197 / HO212634 / transcription factor / UniProtKB / 5.00E-29 / Q9LFQ9 / Q9LFQ9_ARATH
DhSL-200 / HO212637 / acyltransferase / TAIR / 1.70E-30 / 0.93 / AT2G26250 / KCS10
DhSL-201 / HO212638 / voltage-gated potassium channel / TAIR / 4.20E-56 / 0.88 / AT5G55000 / FIP2
DhSL-203 / HO212640 / protein kinase / UniProtKB / 2.00E-44 / B9SLK8 / B9SLK8_RICCO
DhSL-205 / HO212642 / phytoene dehydrogenase, phytoene desaturase [EC:1.14.99.-] / NCBI nt / 3.00E-89 / FJ859989
DhSL-206 / HO212643 / serine carboxypeptidase / UniProtKB / 5.00E-36 / Q2R0J2 / Q2R0J2_ORYSJ
DhSL-209 / HO212646 / pre-mRNA-processing factor / UniProtKB / 2.00E-48 / B6UAA0 / B6UAA0_MAIZE
DhSL-212 / HO212649 / ATPase / NCBI nt / 2.00E-59 / XM_002519454
DhSL-214 / HO212651 / translation initiation factor / TAIR / 1.80E-35 / 0.72 / AT3G13920 / AEIF4A1
DhSL-215 / HO212652 / CoA transferase. / UniProtKB / 6.00E-79 / D1GJ96 / D1GJ96_COFAR
DhSL-220 / HO212657 / 30S ribosomal protein S1 / TAIR / 4.70E-29 / 1.00 / AT5G30510 / RPS1
DhSL-222 / HO212659 / 60S ribosomal protein P0 / TAIR / 8.10E-37 / 0.94 / AT3G09200
DhSL-225 / HO212662 / dual specificity phosphatase [3.1.3.48] / UniProtKB / 6.00E-42 / B9RU89 / B9RU89_RICCO
DhSL-230 / HO212667 / nodulin / TAIR / 8.80E-67 / 0.84 / AT4G34950
DhSL-231 / HO212668 / sulfate transporter / TAIR / 6.60E-31 / 0.87 / AT3G51895 / SULTR3
DhSL-233 / HO212670 / polyamine oxidase (propane-1,3-diamine-forming) [EC:1.5.3.14] / UniProtKB / 3.00E-35 / Q9FXZ9 / Q9FXZ9_MAIZE
DhSL-234 / HO212671 / GTPase / UniProtKB / 1.00E-80 / D7TC51 / D7TC51_VITVI
DhSL-235 / HO212672 / TGF beta receptor associated / UniProtKB / 6.00E-36 / Q10DX1 / Q10DX1_ORYSJ
DhSL-237 / HO212674 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AY095450
DhSL-238 / HO212675 / DNA helicase / TAIR / 3.80E-61 / 1.00 / AT5G35970
DhSL-239 / HO212676 / nodulin / UniProtKB / 1.00E-37 / Q2R3P9 / Q2R3P9_ORYSJ
DhSL-240 / HO212677 / phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] / TAIR / 1.80E-44 / 0.78 / AT3G55010 / PUR5
DhSL-241 / HO212678 / VTC2 / TAIR / 1.30E-21 / 0.77 / AT4G26850 / VTC2
DhSL-250 / HO212687 / ceramidase / TAIR / 1.90E-51 / 0.99 / AT2G38010
DhSL-252 / HO212689 / aminotransferase / UniProtKB / 0.00E+00 / Q2R0I0 / Q2R0I0_ORYSJ
DhSL-254 / HO212691 / nodulin / TAIR / 3.90E-45 / 0.94 / AT1G80530
DhSL-256 / HO212693 / FLU / TAIR / 1.20E-35 / 0.76 / AT3G14110 / FLU
DhSL-257 / HO212694 / syntaxin / TAIR / 5.70E-71 / 0.78 / AT3G09740 / SYP71
DhSL-262 / HO212699 / syntaxin / TAIR / 1.80E-45 / 0.76 / AT5G08080 / SNAP
DhSL-264 / HO212701 / 26S ribosomal RNA / NCBI nt / 2.00E-96 / DQ008625
DhSL-265 / HO212702 / 3-beta hydroxysteroid dehydrogenase [EC:5.1.3.2] / TAIR / 1.80E-45 / 1.00 / AT5G02240
DhSL-271 / HO212708 / ABC transporter / TAIR / 1.10E-72 / 0.92 / AT5G60790
DhSL-272 / HO212709 / FTSH1 / TAIR / 1.10E-54 / 0.90 / AT1G50250 / FTSH1
DhSL-274 / HO212711 / RNA polymerase / TAIR / 2.00E-75 / 0.91 / AT1G14790 / RDR1
DhSL-275 / HO212712 / mitochondrial 26S ribosomal RNA / TAIR / 5.90E-102 / 1.00 / ATMG00020
DhSL-276 / HO212713 / ATPase / TAIR / 4.90E-61 / 0.76 / AT1G53750 / RPT1A
DhSL-277 / HO212714 / kinase / TAIR / 1.90E-34 / 0.71 / AT2G18890
DhSL-278 / HO212715 / dihydroflavonal-4-reductase / UniProtKB / 1.00E-57 / B9RHS0 / B9RHS0_RICCO
DhSL-288 / HO212725 / porin / UniProtKB / 6.00E-55 / Q10S27 / Q10S27_ORYSJ
DhSL-290 / HO212727 / 16S ribosomal RNA / TAIR / 3.60E-139 / 0.99 / ATCG00920
DhSL-295 / HO212732 / MAPKKK / kinase / TAIR / 9.60E-33 / 0.99 / AT4G08470 / MAPKKK10
DhSL-298 / HO212735 / solanesyl diphosphate synthase [EC:2.5.1.11] / TAIR / 9.20E-36 / 0.93 / AT1G17050 / SPS2
DhSL-299 / HO212736 / ubiquitin-activating enzyme E1 [EC:6.3.2.19] / TAIR / 2.80E-88 / 1.00 / AT2G30110 / ATUBA1
DhSL-300 / HO212737 / 60S ribosomal protein L9 / TAIR / 2.50E-40 / 0.83 / AT4G10450
DhSL-304 / HO212741 / 26S ribosomal RNA / NCBI nt / 5.00E-146 / EU433932
DhSL-306 / HO212743 / nascent polypeptide-associated complex subunit alpha / UniProtKB / 5.00E-27 / Q9LHG9 / NACA1_ARATH
DhSL-309 / HO212746 / kinase / UniProtKB / 8.00E-32 / Q7X992 / Q7X992_ORYSJ
DhSL-310 / HO212747 / 60S ribosomal protein L18 / TAIR / 7.80E-47 / 0.89 / AT5G27850
DhSL-312 / HO212749 / flavanone 3-hydroxylase / NCBI nt / 2.00E-121 / X89199
DhSL-313 / HO212750 / oligosaccharide transporter activity / UniProtKB / 1.00E-46 / B4FSV8 / B4FSV8_MAIZE
DhSL-315 / HO212752 / 60S ribosomal protein / UniProtKB / 4.00E-38 / Q9SPB3 / RL10_VITRI
DhSL-318 / HO212755 / transcription factor / UniProtKB / 6.00E-60 / B9SYZ6 / B9SYZ6_RICCO
DhSL-319 / HO212756 / cytochrome P450 / UniProtKB / 5.00E-38 / B9R738 / B9R738_RICCO
DhSL-320 / HO212757 / 26S proteasome / TAIR / 7.10E-74 / 0.95 / AT1G20200 / EMB2719
DhSL-323 / HO212760 / geranylgeranyl diphosphate synthase / UniProtKB / 4.00E-42 / P34802 / GGPP1_ARATH
DhSL-324 / HO212761 / thiamine biosynthetic enzyme / TAIR / 2.30E-85 / 0.99 / AT5G54770 / THI1
DhSL-332 / HO212769 / peroxin-3 / UniProtKB / 4.00E-38 / D7L803 / D7L803_ARALY
DhSL-335 / HO212772 / 16S ribosomal RNA / NCBI nt / 6.00E-101 / FJ895895
DhSL-344 / HO212781 / voltage dependent ion channel / UniProtKB / 3.00E-38 / P42055 / VDAC1_SOLTU
DhSL-347 / HO212784 / H+-pyrophosphatase / NCBI nt / 2.00E-58 / DQ443731
DhSL-349 / HO212786 / elongation factor EF-1 beta subunit / UniProtKB / 1.00E-37 / P29545 / EF1B_ORYSJ
DhSL-351 / HO212788 / glycosyltransferase / TAIR / 3.70E-62 / 0.98 / AT5G19670
DhSL-352 / HO212789 / thaumatin / UniProtKB / 3.00E-31 / P81370 / TLP_ACTDE
DhSL-355 / HO212792 / protein transport / UniProtKB / 1.00E-31 / Q84WD1 / Q84WD1_ARATH
DhSL-356 / HO212793 / ABC transporter / TAIR / 3.10E-92 / 0.96 / AT4G19210 / ATRLI2
DhSL-357 / HO212794 / cellulose synthase A [EC:2.4.1.12] / TAIR / 4.70E-72 / 1.00 / AT5G05170 / CEV1
DhSL-368 / HO212805 / mitochondrial 26S ribosomal RNA / NCBI nt / 0.00E+00 / AY095472
DhSL-369 / HO212806 / lipase / UniProtKB / 1.00E-56 / B6TGF9 / B6TGF9_MAIZE
DhSL-370 / HO212807 / protein kinase / TAIR / 3.20E-32 / 0.86 / AT1G06840
DhSL-372 / HO212809 / ribonuclease III / TAIR / 3.10E-65 / 0.96 / AT4G37510
DhSL-379 / HO212816 / serine/threonine kinase / TAIR / 1.30E-60 / 0.84 / AT3G05840 / ATSK12
DhSL-381 / HO212818 / pyruvate dehydrogenase kinase [EC:2.7.11.2] / UniProtKB / 1.00E-74 / Q6PP99 / Q6PP99_SOYBN
DhSL-384 / HO212821 / metalloendopeptidase/ zinc ion binding / TAIR / 1.60E-66 / 1.00 / AT5G42620
DhSL-385 / HO212822 / phosphatase / UniProtKB / 6.00E-25 / B9RHA3 / B9RHA3_RICCO
DhSL-386 / HO212823 / 26S proteasome / TAIR / 8.20E-126 / 1.00 / AT2G32730
DhSL-390 / HO212827 / purple acid phosphatase / TAIR / 6.30E-58 / 1.00 / AT3G20500 / PAP18
DhSL-391 / HO212828 / O-methyltransferase / UniProtKB / 2.00E-54 / B9SIJ9 / B9SIJ9_RICCO
DhSL-392 / HO212829 / syntaxin / TAIR / 8.20E-51 / 0.87 / AT1G79590 / SYP52
DhSL-394 / HO212831 / lipase / UniProtKB / 7.00E-29 / D7MQR9 / D7MQR9_ARALY
DhSL-398 / HO212835 / mitochondrial 26S ribosomal RNA / NCBI nt / 2.00E-48 / EU650389
DhSL-401 / HO212838 / carboxymethylenebutenolidase [EC:3.1.1.45] / TAIR / 8.20E-39 / 0.95 / AT2G32520
DhSL-404 / HO212841 / lipase / UniProtKB / 3.00E-36 / Q9LH73 / GDL52_ARATH
DhSL-405 / HO212842 / rab GTPase / UniProtKB / 2.00E-57 / D2VQT3 / D2VQT3_NAEGR
DhSL-406 / HO212843 / chloroplast positioning / TAIR / 3.20E-40 / 0.93 / AT3G25690 / CHUP1
DhSL-412 / HO212849 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AY095471
DhSL-415 / HO212852 / peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] / TAIR / 5.80E-38 / 0.80 / AT1G53670
DhSL-416 / HO212853 / histolysain / TAIR / 2.80E-76 / 0.99 / AT4G39090 / RD19
DhSL-417 / HO212854 / peptide alpha-N-acetyltransferase [EC:2.3.1.88] / TAIR / 2.40E-45 / 0.96 / AT1G80410
DhSL-418 / HO212855 / pectin methlyesterase inhibitor / UniProtKB / 1.00E-35 / C7C5S8 / C7C5S8_NICBE
DhSL-419 / HO212856 / beta-galactosidase [3.2.1.23] / TAIR / 2.60E-42 / 0.86 / AT4G36360 / BGAL3
DhSL-425 / HO212862 / CDC48 / TAIR / 3.00E-93 / 1.00 / AT5G03340 / CDC48
DhSL-427 / HO212864 / DEAD box RNA helicase / TAIR / 4.60E-88 / 0.99 / AT5G63630
DhSL-428 / HO212865 / anthranilate phosphoribosyltransferase / UniProtKB / 7.00E-44 / Q0TV71 / Q0TV71_ARATH
DhSL-430 / HO212867 / 18S ribosomal RNA / TAIR / 2.30E-83 / 0.99 / AT3G41768
DhSL-431 / HO212868 / protein disulfide-isomerase / TAIR / 1.10E-70 / 0.96 / AT2G47470 / UNE5
DhSL-435 / HO212872 / ABC transporter /ABA uptake / TAIR / 3.40E-93 / 1.00 / AT1G15520 / PDR12
DhSL-436 / HO212873 / transporter / TAIR / 2.90E-58 / 0.82 / AT5G19980 / GONST4
DhSL-438 / HO212875 / dynamin / ADL1 / TAIR / 1.50E-63 / 0.98 / AT5G42080 / ADL1
DhSL-440 / HO212877 / zinc transporter / UniProtKB / 3.00E-24 / B9RL85 / B9RL85_RICCO
DhSL-442 / HO212879 / ubiquitin-conjugating enzyme / UniProtKB / 4.00E-50 / B9R7Z4 / B9R7Z4_RICCO
DhSL-445 / HO212882 / ubiquitin-conjugating enzyme / UniProtKB / 6.00E-30 / Q9ZVX1 / UBC23_ARATH
DhSL-447 / HO212884 / BAK1 / TAIR / 1.20E-52 / 1.00 / AT5G10290
DhSL-448 / HO212885 / cytochrome P450 / UniProtKB / 3.00E-69 / A9ZT57 / A9ZT57_COPJA
DhSL-452 / HO212889 / FTSH1 / TAIR / 9.30E-76 / 0.94 / AT1G50250 / FTSH1
DhSL-455 / HO212892 / ribosomal protein S8e / TAIR / 2.10E-44 / 0.74 / AT5G06360
DhSL-459 / HO212896 / translation initiation factor eIF-2 alpha subunit / TAIR / 1.70E-37 / 0.95 / AT2G40290
DhSL-463 / HO212900 / ubiquitin-conjugating enzyme E2 J1 [EC:6.3.2.19] / UniProtKB / 3.00E-22 / Q9LSP7 / UBC32_ARATH
DhSL-469 / HO212906 / protease / UniProtKB / 1.00E-32 / B9RS08 / B9RS08_RICCO
DhSL-471 / HO212908 / subtilisin-like / UniProtKB / 3.00E-38 / B6UDX1 / B6UDX1_MAIZE
DhSL-472 / HO212909 / ubiquitin-conjugating enzyme E2 D/E [EC:6.3.2.19] / TAIR / 2.60E-64 / 0.81 / AT4G27960 / UBC9
DhSL-474 / HO212911 / beclin 1 / UniProtKB / 4.00E-44 / Q94C41 / Q94C41_WHEAT
DhSL-475 / HO212912 / glutathione S-transferase [EC:2.5.1.18] / UniProtKB / 2.00E-44 / P04907 / GSTF3_MAIZE
DhSL-476 / HO212913 / LSD1-like / UniProtKB / 1.00E-34 / B2CR51 / B2CR51_HORVD
DhSL-477 / HO212914 / EGY1 / TAIR / 7.20E-51 / 0.67 / AT5G35220 / EGY1
DhSL-481 / HO212918 / ribosomal protein L9 / TAIR / 9.70E-33 / 0.84 / AT3G44890 / RPL9
DhSL-484 / HO212921 / S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase / TAIR / 3.00E-88 / 0.80 / AT5G43940 / HOT5
DhSL-485 / HO212922 / kinesin / TAIR / 3.50E-62 / 0.97 / AT5G54670 / ATK3
DhSL-487 / HO212924 / pyridine nucleotide-disulphide oxidoreductase / TAIR / 1.90E-40 / 1.00 / AT5G22140
DhSL-494 / HO212931 / GTPase / NCBI nt / 6.00E-79 / AJ222545
DhSL-502 / HO212939 / 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis / TAIR / 6.60E-61 / 1.00 / AT1G53280
DhSL-503 / HO212940 / AMP deaminase [EC:3.5.4.6] / TAIR / 1.80E-85 / 1.00 / AT2G38280 / FAC1
DhSL-511 / HO212948 / kinase / UniProtKB / 9.00E-26 / Q6Z5P3 / Q6Z5P3_ORYSJ
DhSL-514 / HO212951 / light-harvesting complex I / UniProtKB / 6.00E-39 / P27521 / CA4_ARATH
DhSL-517 / HO212954 / DEAD box RNA helicase / UniProtKB / 0.00E+00 / Q53RK8 / RH21_ORYSJ
DhSL-520 / HO212957 / 18S ribosomal RNA / TAIR / 3.70E-93 / 1.00 / AT3G41768
DhSL-522 / HO212959 / 18S ribosomal RNA / TAIR / 1.50E-88 / 0.99 / AT3G41768
DhSL-523 / HO212960 / 16S ribosomal RNA / NCBI nt / 7.00E-117 / HM341714
DhSL-529 / HO212966 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AF036491
DhSL-531 / HO212968 / phosphoenolpyruvate carboxylase [EC:4.1.1.31] / TAIR / 4.30E-73 / 0.78 / AT2G42600 / ATPPC2
DhSL-532 / HO212969 / ABC transporter / TAIR / 3.90E-73 / 1.00 / AT2G34660 / ATMRP2
DhSL-536 / HO212973 / subtilisin / TAIR / 9.80E-54 / 1.00 / AT4G30020
DhSL-538 / HO212975 / fasciclin-like / UniProtKB / 7.00E-37 / A9XTM4 / A9XTM4_GOSHI
DhSL-540 / HO212977 / nexin / TAIR / 9.10E-47 / 1.00 / AT5G06140 / SNX1
DhSL-542 / HO212979 / serine protease / UniProtKB / 5.00E-49 / O82007 / O82007_SOLLC
DhSL-545 / HO212982 / nodulin / UniProtKB / 3.00E-36 / D7L9J9 / D7L9J9_ARALY
DhSL-546 / HO212983 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AY095450
DhSL-550 / HO212987 / monooxygenase / UniProtKB / 1.00E-42 / O81816 / O81816_ARATH
DhSL-552 / HO212989 / protease / TAIR / 5.40E-44 / 0.94 / AT1G33360
DhSL-560 / HO212997 / cytochrome P450 / NCBI nt / 3.00E-130 / GU942926
DhSL-563 / HO213000 / mechanically-gated ion channel / TAIR / 3.20E-56 / 0.90 / AT5G12080 / MSL10
DhSL-565 / HO213002 / S-locus lectin protein kinase / UniProtKB / 6.00E-40 / B2Y4N4 / B2Y4N4_ARAHA
DhSL-566 / HO213003 / 60S ribosomal protein L9 / UniProtKB / 2.00E-64 / P49210 / RL9_ORYSJ
DhSL-567 / HO213004 / aquaporin / TAIR / 2.80E-55 / 0.96 / AT4G23400 / PIP1
DhSL-573 / HO213010 / 26S ribosomal RNA / TAIR / 1.60E-82 / 0.83 / ATMG00020
DhSL-576 / HO213013 / translation initiation factor / TAIR / 1.30E-46 / 0.83 / AT1G17880
DhSL-577 / HO213014 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AY095460
DhSL-578 / HO213015 / 26S ribosomal RNA / NCBI nt / 0.00E+00 / AF036490
DhSL-579 / HO213016 / 26S ribosomal RNA / NCBI nt / 7.00E-156 / EU433932
DhSL-580 / HO213017 / phosphohydrolase / TAIR / 1.80E-42 / 0.73 / AT1G17330
DhSL-582 / HO213019 / zinc finger protein / TAIR / 1.10E-43 / 1.00 / AT1G20110
DhSL-587 / HO213024 / RD19 / TAIR / 4.10E-92 / 0.97 / AT4G39090 / RD19
DhSL-594 / HO213031 / serine protease / UniProtKB / 4.00E-45 / B9RBY4 / B9RBY4_RICCO
DhSL-595 / HO213032 / 26S ribosomal RNA / NCBI nt / 3.00E-169 / EU433932
DhSL-599 / HO213036 / pre-mRNA splicing factor / TAIR / 5.90E-40 / 0.86 / AT4G03430 / EMB2770
DhSL-604 / HO213041 / 23S ribosomal RNA / TAIR / 0.00E+00 / 0.99 / ATCG00950
DhSL-605 / HO213042 / signal recognition particle receptor / TAIR / 1.30E-62 / 0.79 / AT4G30600
DhSL-606 / HO213043 / ribosomal protein / UniProtKB / 4.00E-32 / B3TLR8 / B3TLR8_ELAGV
DhSL-607 / HO213044 / zinc finger protein / TAIR / 5.80E-32 / 0.97 / AT5G60250
DhSL-609 / HO213046 / thiazole biosynthetic enzyme / TAIR / 3.50E-39 / 0.86 / AT5G54770 / THI1

The transcripts have been sorted by according to the order of discussion and of appearance in Figure S1. The names of the transcripts, their accession number in NCBI dbEST (Accession), their predicted function (Putative function) and details on the functional annotations are provided. Transcript sequences were searched against three databases, TAIR [29], NCBI nt [28] and UniProtKB [27], and the alignment with the hit selected for the functional annotations are described in the table with an expected value (E value) and the name (Hit name) and accession (Hit acc) of the hit. The fraction of the transcript sequences aligned with the sequence hit (Fraction) is provided for the functional annotations that used the TAIR database.