Table S1: GenBank numbers for Eleotridae used in phylogenetic analysis.
TaxonCOIcytbND1ND2
Rhyacichthyidae
Rhyacichthys asproAP004454AP004454AP004454AP004454
Odontobutidae
Odontobutis obscuraAF391330 ------AF391402AF391474
Odontobutis potamophilaAY722174AY722247AY722311AY722371
AY722153AY722225AY722290AY722353
Milyeringidae
Milyeringa veritasAY722168AY722240AY722305 ------
AY722169AY722241AY722306 ------
Butidae
Bostrychus sinensisAY722164AY722236AY722301 ------
Butis butisAY722180 ------AY722319AY722377
Kribia nana ------AY722211AY722278 ------
AY722150AY722222AY722288 ------
------AY722221AY722287 ------
Ophiocara porocephalaAY722250 ------AY722314 ------
Oxyeleotris lineolatusAY722165AY722237AY722302AY722364
AY722139AY722209AY722276AY722340
Oxyeleotris marmorataAY722177AY722252AY722316AY722374
AY722176AY722251AY722315AY722373
Oxyeleotris nullipora ------AY722249AY722313 ------
------AY722242AY722307 ------
Oxyeleotris selhemiAY722179 ------AY722318AY722376
AY722166AY722238AY722303AY722365
Eleotridae
Calumia godfrayiAY722125AY722194AY722262AY722325
Dormitator latifronsAY722142AY722213AY722280AY722343
AY722138AY722207AY722274AY722338
Dormitator maculatusAY722143AY722214AY722281AY722344
AY722137AY722206AY722273AY722337
Eleotris acanthopomaAP004455AP004455AP004455AP004455
Eleotris armigerAY722167AY722239AY722304AY722366
Eleotris amblyopsisAY722136AY722205AY722272AY722336
AY722154AY722226AY722291AY722354
AY722141AY722212AY722279AY722342
Eleotris fuscaAY722172AY722245AY722309AY722369
Eleotris pictaAY722148AY722219AY722286AY722349
AY722135AY722204AY722271AY722334
AY722157AY722229AY722294AY722357
Eleotris sandwicensisAF391477AY722186AF391333AF391405
AF391478 ------AF391334AF391406
Eleotris smaragdusAF391499AY722185AF391355AF391427
Gobiomorphus australisAY722145AY722216AY722283AY722346
AY722147AY722218AY722285AY722348
Gobiomorphus brevicepsAY722152AY722224AY722289AY722352
Gobiomorphus coxiiAY722149AY722220 ------AY722350
AY722151AY722223 ------AY722351
Gobiomorphus hubbsiAY722155AY722227AY722292AY722355
AY722156AY722228AY722293AY722356
AY722158AY722230AY722295AY722358
Gobiomorus dormitorAY722144AY722215AY722282AY722345
AY722134AY722203AY722270AY722334
Gobiomorus maculatusAY722132AY722201AY722269AY722332
AY722124AY722193AY722261AY722324
AY722178 ------AY722317AY722375
AY722133AY722202 ------AY722333
Guavina micropusAY722131AY722200AY722268AY722331
Hemieleotris latifasciatusAY722173AY722246AY722310AY722370
Hypseleotris aureaAF391536AY722187AF391392AF391464
Hypseleotris compressaAF391510AY722188AF391366AF391438
Hypseleotris klunzingeriAF391537AY722189AF391393AF391465
Leptophilypnus fluviatilisAY722130AY722199AY722267AY722330
AY722129AY722198AY722266AY722329
AY722128AY722197AY722265AY722328
Leptophilypnus panamensisAY722127AY722195AY722264AY722326
AY722126AY722196AY722263AY722327
Microphilypnus ternetziAY722181AY722253AY722320AY722378
Mogurnda adspersaAF391511AY722184AF391367AF391439
Mogurnda mogurndaAY722140AY722210AY722277AY722341
AY722123AY722192AY722260AY722323
Ophieleotris aporosAF391512 ------AF391368AF391440
AY722160AY722232AY722297AY722360
AY722159AY722231AY722296AY722359
AY722161AY722233AY722298AY722361
Philypnodon grandicepsAF391530 ------AF391386AF391458
Ratsirakea legendreiAY722162AY722234AY722299AY722362
AY722163AY722235AY722300AY722363
Tateurndina ocellicaudaAY722175AY722248AY722312AY722372
Xenisthmus sp.AF391516 ------AF391372AF391444
Table S2:GenBank numbers for Apogonidae used in phylogenetic analysis.
TaxonCOIENC1RAG1
Apogon atradorsatusAB890008AB893478AB893361
Apogon aurolineatusAB890009 ------AB893362
Apogon campbelliAB890010AB893480AB893363
Apogon crassicepsAB890011AB893481AB893364
Apogon doryssaAB890012AB893482AB893365
Apogon dovii ------AB893483AB893366
Apogon guadalupensisAB890013AB893484AB893367
Apogon imberbis ------AB893485AB893368
Apogon maculatusAB890014AB893486AB893369
Apogon pacificusAB890015AB893487AB893370
Apogon phenaxAB890016AB893488AB893371
Apogon planifronsAB890017AB893489AB893372
Apogon pseudomaculatus ------AB893490AB893373
Apogon retrosellaAB890018AB893491AB893374
Apogon seminigracaudusAB890019AB893492AB893375
Apogon semiornatusAB890020AB893493AB893376
Apogon talbotiAB890021AB893494AB893377
Apogon townsendiAB890022AB893495AB893378
Apogon unicolorAB890023AB893496AB893379
Astrapogon puncticulatusAB890030AB893503AB893386
Gymnapogon vanderbiltiAB890003AB893473AB893356
Paroncheilus affinisAB890088AB893560AB893440
Phaeoptyx conkliniAB890089AB893561AB893441
Phaeoptyx pigmentariaAB890090AB893562AB893442
Pseudamia gelatinosaAB890005AB893475AB893358
Zapogon evermanniAB890118AB893590AB893468
Table S3: Eleotridae and Apogonidae specimens used in morphometric analyses. ANSP = Academy of Natural Sciences, Philadelphia; CAR = Caribbean/Western Atlantic; EPAC = Eastern Pacific; FMNH = Field Museum of Natural History; LACM = Natural History Museum of Los Angeles County; MED = Mediterranean; UF = Florida Museum of Natural History.
TaxonNRangeCatalog number
Eleotridae
Dormitator latifrons1EPACLACM 2811
5EPACLACM 56197-4
5EPACUF 15276
5EPACUF 19853
Dormitator maculatus2CARLACM 1445
3CARLACM 5659
1CARLACM 32374-7
10CARUF 188083
Eleotris armiger4EPACLACM 7037
3EPACUF 4465
4EPACUF 224455
Eleotris smaragdus5CARLACM 31007-21
2CARUF 18289
1CARUF 62243
1CARUF 99915
1CARUF 200732
Gobiomorus dormitor3CARLACM 32345-4
1CARLACM 32347-1
2CARLACM 32437-3
1CARUF 9263
3CARUF 11078
2CARUF 11192
4CARUF 134876
Gobiomorus maculatus1EPACLACM 2776
5EPACLACM 4843
Apogonidae
Apogon atradorsatus6EPACLACM 43680-14
LACM 45585-3
Apogon aurolineatus6CARANSP 108410
ANSP 1118444
ANSP 127857
Apogon binotatus9CARANSP 94861
ANSP 147262
Apogon dovii7EPACLACM 32492-17
LACM 32503-6
LACM 32537-15
Apogon guadalupensis6EPACLACM 31782-49
LACM 32097-54
Apogon imberbis9MEDUF 225062
Apogon lachneri5CARLACM 4539
LACM 30259-17
Apogon maculatus7CARLACM 7742
LACM 36219-4
Apogon mosavi6CARANSP 113434
Apogon pacificus5EPACLACM 31776-29
LACM 32495
Apogon phenax7CARFMNH 98106
FMNH 98236
FMNH 98409
FMNH 98420
FMNH 98476
Apogon pillionatus3CARANSP 123818
ANSP 144339
ANSP 149005
Apogon planifrons7CARFMNH 98122
FMNH 98562
FMNH 98600
FMNH 98605
LACM 8940-15
Apogon pseudomaculatus6CARFMNH 64209
FMNH 64214
FMNH 65175
FMNH 65193
LACM 2457
Apogon quadrisquamatus4CARANSP 97026
Apogon retrosella7EPACLACM 6963-9
LACM 6981-8
Apogon townsendi11CARFMNH 97254
FMNH 98065
FMNH 98481
LACM 4563
Astrapogon alutus2CARLACM 5374
Astrapogon puncticulatus7CARFMNH 98111
FMNH 98187
FMNH 98195
FMNH 98205
FMNH 98217
Astrapogon stellatus3CARLACM 5378
LACM 6717-1
Paroncheilus affinis4CARANSP 144100
ANSP 144192
Phaeoptyx conklini9CARLACM 5379
LACM 5380
LACM 5389
Phaeoptyx pigmentaria9CARLACM 2556
LACM 5397
LACM 31573-7
LACM 36218-7
Phaeoptyx xenus8CARFMNH 82586
FMNH 98063
FMNH 98075
FMNH 98121
FMNH 98434
LACM 6834-1
Zapogon evermanni4CARANSP 144099
ANSP144100
FMNH 118475
FMNH 119001