Total Record Count

Total Record Count

Bivariate Fit of RecordCount By Sample Index

Fit Mean DzState==0 Fit Mean DzState==1

Mean / 359634.2
Std Dev [RMSE] / 8223.46
Std Error / 843.7092
SSE / 6.3568e9
Mean / 351687.9
Std Dev [RMSE] / 13352.48
Std Error / 1153.479
SSE / 2.371e10

Notes:

Mean/standard deviation of diseased cohort was 341728.3/31612.18 in previous study.

Analysis of Raw QSTAR Ovarian Data

Average/Mean of Raw Data Amplitude Values by Sample

Bivariate Fit of AvgRawAmp By Sample Index

Fit Mean DzState==0 Fit Mean DzState==1

Mean / 6.018522
Std Dev [RMSE] / 1.040222
Std Error / 0.106724
SSE / 101.7137
Mean / 5.008194
Std Dev [RMSE] / 1.250808
Std Error / 0.108053
SSE / 208.0814

Standard Deviation of Raw Data Amplitude Values

Bivariate Fit of SdAmp By Sample Index

Fit Mean DzState==0 Fit Mean DzState==1

Mean / 14.44126
Std Dev [RMSE] / 5.064807
Std Error / 0.519638
SSE / 2411.313
Mean / 9.540804
Std Dev [RMSE] / 4.416473
Std Error / 0.381525
SSE / 2594.196

Sum of Raw Data Amplitude Values

Bivariate Fit of SumAmp By Sample Index

Fit Mean DzState==0Fit Mean DzState==1

Mean / 2171246
Std Dev [RMSE] / 413557.3
Std Error / 42430.08
SSE / 1.608e13
Mean / 1776078
Std Dev [RMSE] / 497995.9
Std Error / 43020.29
SSE / 3.298e13

First Quartile (25%) Raw Data Amplitude Values

Bivariate Fit of Q1 Amp (25%) By Sample Index

Fit Mean DzState==0 Fit Mean DzState==1

Mean / 2.578947
Std Dev [RMSE] / 0.593922
Std Error / 0.060935
SSE / 33.15789
Mean / 2.19403
Std Dev [RMSE] / 0.630999
Std Error / 0.05451
SSE / 52.95522

Second Quartile (Median) Raw Data Amplitude Values

Bivariate Fit of Q2 Amp (Median) By Sample Index

Fit Mean DzState==1

Mean / 3.559701
Std Dev [RMSE] / 0.913649
Std Error / 0.078927
SSE / 111.0224

Fit Mean DzState==0

Mean / 4.157895
Std Dev [RMSE] / 0.789772
Std Error / 0.081029
SSE / 58.63158

Third Quartile (75%) Raw Data Amplitude Values

Bivariate Fit of Q3 Amp (75%) By Sample Index

Fit Mean DzState==0 Fit Mean DzState==1

Mean / 6.336842
Std Dev [RMSE] / 1.087751
Std Error / 0.111601
SSE / 111.2211
Mean / 5.604478
Std Dev [RMSE] / 1.262642
Std Error / 0.109076
SSE / 212.0373

Average/mean of normalized amp (nlAmp) values per mass species, generated by avg amp values

Bivariate Fit of nlAmpAvg By Sample Index

Fit Mean DzState==0

Mean / 0.466002
Std Dev [RMSE] / 0.122341
Std Error / 0.012552
SSE / 1.406935

Fit Mean DzState==1

Mean / 0.377432
Std Dev [RMSE] / 0.128193
Std Error / 0.011074
SSE / 2.185641

Average/mean of normalized amp (nlAmp) values per mass species, generated by the sum amp values

Bivariate Fit of nlAmpSum By Sample Index

Fit Mean DzState==0

Mean / 0.497967
Std Dev [RMSE] / 0.118671
Std Error / 0.012175
SSE / 1.323786

Fit Mean DzState==1

Mean / 0.411424
Std Dev [RMSE] / 0.12705
Std Error / 0.010975
SSE / 2.146855

Notes:

New plot (not prev seen).

QStar Ovarian

Total number of records per sample

Colored by run date (green=day1, red=day2, blue=day3)

Bivariate Fit of recordct By index

Fit Mean dzstate==0

Mean / 359634.2
Std Dev [RMSE] / 8223.46
Std Error / 843.7092
SSE / 6.3568e9

Fit Mean dzstate==1

Mean / 341728.3
Std Dev [RMSE] / 31612.18
Std Error / 2564.087
SSE / 1.509e11

NIST SRM Standard

Control charting

Processed on QSTAR:

Note: Mean = Red line; Best Fit = Green Line; Dot colors per Spot Number

Bivariate Fit of MeanAmp By Index

Fit Mean

Mean / 4.918102
Std Dev [RMSE] / 1.040538
Std Error / 0.173423
SSE / 37.8952

NIST, QSTAR, Stdev

Color scheme same as above

Bivariate Fit of StdevAmp By Index

Fit Mean

Mean / 4.934483
Std Dev [RMSE] / 1.354156
Std Error / 0.225693
SSE / 64.18089

NIST, QSTAR, SumAmp

Same color scheme

Bivariate Fit of SumAmp By Index

Fit Mean

Mean / 1771965
Std Dev [RMSE] / 416985.3
Std Error / 69497.55
SSE / 6.086e12

NIST, QSTAR

Colors by Lot Number

Bivariate Fit of SumAmp By Index

Fit Mean

Mean / 1771965
Std Dev [RMSE] / 416985.3
Std Error / 69497.55
SSE / 6.086e12

NIST, QSTAR

Colors by Run Date

Bivariate Fit of SumAmp By Index

Fit Mean

Mean / 1771965
Std Dev [RMSE] / 416985.3
Std Error / 69497.55
SSE / 6.086e12

QStar NIST

Total number of records per sample

Colored by run date (green=day1, red=day2, blue=day3)

Bivariate Fit of recordct By sampleid

Fit Mean

Mean / 358034.1
Std Dev [RMSE] / 12257.47
Std Error / 2042.911
SSE / 5.2586e9