Table S1The list of 130 chains and corresponding partner chains

Chain_A* / Chain_B / Chain_A / Chain_B / Chain_A / Chain_B / Chain_A / Chain_B
1A4Y_A
1ABR_A
1ABR_B
1ACB_I
1AHW_B
1AHW_C
1AK4_A
1AK4_D
1ATN_D
1AVG_H
1AVG_I
1AVW_B
1AVZ_B
1AVZ_C
1AY7_A
1AY7_B
1AZS_B
1AZS_C
1AZZ_C
1B6C_A
1B6C_B
1B7Y_A
1B7Y_B
1BDJ_A
1BDJ_B
1BGX_T
1BI7_A
1BI7_B
1BI8_B
1BMQ_A
1BMQ_B
1BP3_A
1BP3_B
1BRB_I
1BRS_A
1BVK_A
1BVK_C
1BVN_P
1BVN_T
1CA0_B / 1A4Y_B
1ABR_B
1ABR_A
1ACB_E
1AHW_C
1AHW_B
1AK4_D
1AK4_A
1ATN_A
1AVG_I
1AVG_H
1AVW_A
1AVZ_C
1AVZ_B
1AY7_B
1AY7_A
1AZS_C
1AZS_B
1AZZ_A
1B6C_B
1B6C_A
1B7Y_B
1B7Y_A
1BDJ_B
1BDJ_A
1BGX_H
1BI7_B
1BI7_A
1BI8_A
1BMQ_B
1BMQ_A
1BP3_B
1BP3_A
1BRB_E
1BRS_D
1BVK_C
1BVK_A
1BVN_T
1BVN_P
1CA0_D / 1CGI_I
1CXZ_B
1D4V_A
1D4V_B
1DAN_L
1DAN_T
1DAN_U
1DFJ_E
1DHK_B
1DN1_A
1DN1_B
1E96_A
1E96_B
1E9H_B
1EAY_C
1EFU_A
1EFU_B
1ETH_A
1ETH_B
1FAP_B
1FLE_I
1FLT_V
1FLT_Y
1FQ1_A
1FSS_B
1GFW_A
1GFW_B
1GLA_F
1GLA_G
1GOT_B
1GOT_G
1GPQ_A
1GUA_B
1HE8_A
1HJA_C
1HLU_A
1HLU_P
1HWH_B
1IRA_X
1IRA_Y / 1CGI_E
1CXZ_A
1D4V_B
1D4V_A
1DAN_U
1DAN_H
1DAN_L
1DFJ_I
1DHK_A
1DN1_B
1DN1_A
1E96_B
1E96_A
1E9H_A
1EAY_A
1EFU_B
1EFU_A
1ETH_B
1ETH_A
1FAP_A
1FLE_E
1FLT_Y
1FLT_V
1FQ1_B
1FSS_A
1GFW_B
1GFW_A
1GLA_G
1GLA_F
1GOT_G
1GOT_B
1GPQ_D
1GUA_A
1HE8_B
1HJA_I
1HLU_P
1HLU_A
1HWH_A
1IRA_Y
1IRA_X / 1ITB_A
1JSU_C
1KIG_I
1KKL_A
1KKL_H
1KXV_C
1L0Y_A
1L0Y_B
1MAH_A
1NOC_A
1NOC_B
1PDK_A
1PDK_B
1PYT_A
1PYT_B
1QBK_B
1QBK_C
1SGP_E
1SMP_A
1SMP_I
1SPB_P
1STF_E
1STF_I
1TAB_I
1TCO_A
1TMQ_B
1UDI_E
1UDI_I
1UEA_A
1UEA_B
1UGH_E
1UUZ_A
1VAD_A
1VAD_B
1WQ1_G
1XDT_R
1XDT_T
1ZBD_A
1ZBD_B
2KAI_B / 1ITB_B
1JSU_A
1KIG_H
1KKL_H
1KKL_A
1KXV_A
1L0Y_B
1L0Y_A
1MAH_F
1NOC_B
1NOC_A
1PDK_B
1PDK_A
1PYT_C
1PYT_D
1QBK_C
1QBK_B
1SGP_I
1SMP_I
1SMP_A
1SPB_S
1STF_I
1STF_E
1TAB_E
1TCO_C
1TMQ_A
1UDI_I
1UDI_E
1UEA_B
1UEA_A
1UGH_I
1UUZ_D
1VAD_B
1VAD_A
1WQ1_R
1XDT_T
1XDT_R
1ZBD_B
1ZBD_A
2KAI_I / 2PCC_A
2PCC_B
2SIC_I
2SNI_I
2TEC_E
3SGB_I
3TGI_I
4SGB_I
7CEI_A
7CEI_B / 2PCC_B
2PCC_A
2SIC_E
2SNI_E
2TEC_I
3SGB_E
3TGI_E
4SGB_E
7CEI_B
7CEI_A

* The 130 chains were used in this study.

Table S2The list of 62 protein-protein interaction pairs from benchmark 2.0

Chain_A / Chain_B / Chain_A / Chain_B / Chain_A / Chain_B / Chain_A / Chain_B
1A2K_C
1ACB_E
1AK4_A
1AKJ_A
1ATN_A
1AVX_A
1AY7_A
1B6C_A
1BUH_A
1BVN_P
1CGI_E
1D6R_A
1DE4_A
1DFJ_E
1E6E_A
1E96_A / 1A2K_B
1ACB_I
1AK4_D
1AKJ_D
1ATN_D
1AVX_B
1AY7_B
1B6C_B
1BUH_B
1BVN_T
1CGI_I
1D6R_I
1DE4_C
1DFJ_I
1E6E_B
1E96_B / 1EAW_A
1EER_A
1EWY_A
1EZU_C
1F34_A
1F51_A
1FAK_L
1FC2_C
1FQ1_A
1FQJ_A
1GCQ_B
1GHQ_A
1GP2_A
1GRN_A
1H1V_A
1HE1_C / 1EAW_B
1EER_B
1EWY_C
1EZU_B
1F34_B
1F51_E
1FAK_T
1FC2_D
1FQ1_B
1FQJ_B
1GCQ_C
1GHQ_B
1GP2_B
1GRN_B
1H1V_G
1HE1_A / 1HE8_B
1HIA_B
1I2M_A
1I4D_D
1IB1_A
1IBR_A
1IJK_C
1K5D_A
1KAC_A
1KKL_A
1KLU_A
1KTZ_A
1KXP_A
1M10_A
1MAH_A
1ML0_A / 1HE8_A
1HIA_I
1I2M_B
1I4D_A
1IB1_E
1IBR_B
1IJK_A
1K5D_C
1KAC_B
1KKL_H
1KLU_D
1KTZ_B
1KXP_D
1M10_B
1MAH_F
1ML0_D / 1N2C_A
1PPE_E
1QA9_A
1RLB_B
1SBB_A
1TMQ_A
1UDI_E
1WQ1_R
2BTF_A
2MTA_L
2PCC_A
2SIC_E
2SNI_E
7CEI_A / 1N2C_F
1PPE_I
1QA9_B
1RLB_E
1SBB_B
1TMQ_B
1UDI_I
1WQ1_G
2BTF_P
2MTA_A
2PCC_B
2SIC_I
2SNI_I
7CEI_B