Table S4: List of predicted intra-cellular transporters. '1' represents a transport reaction between the cytosol and the respective compartment.

Metabolite ID / Metabolite name / Plastid / Mitochondria / Peroxisome / ER / Vacuole / Golgi
met3 / 2,3-dihydroxy-3-methylvalerate / 0 / 1 / 0 / 0 / 0 / 0
met5 / 1-O-sinapoyl-beta-D-glucose / 0 / 0 / 0 / 0 / 1 / 0
met6 / N10-formyl-THF / 0 / 1 / 0 / 0 / 0 / 0
met10 / 2-aceto-2-hydroxy-butyrate / 0 / 1 / 0 / 0 / 0 / 0
met11 / 2-acetolactate / 1 / 1 / 0 / 0 / 0 / 0
met17 / 2-hydroxy-3-keto-5-methylthio-1-phosphopentene / 0 / 1 / 0 / 0 / 0 / 0
met18 / 2'-hydroxydaidzein / 1 / 0 / 0 / 0 / 0 / 0
met22 / alpha-ketoglutarate / 0 / 0 / 1 / 0 / 0 / 1
met23 / 2-methyl-3-hydroxybutyryl-CoA / 0 / 0 / 1 / 0 / 0 / 0
met25 / S-2-methyl-butyryl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met29 / 2-phosphoglycerate / 1 / 0 / 1 / 0 / 0 / 0
met32 / 2-ketoisocaproate / 0 / 1 / 0 / 0 / 0 / 0
met33 / alpha-ketoadipate / 0 / 1 / 0 / 0 / 0 / 0
met38 / 5-enolpyruvyl-shikimate-3-phosphate / 1 / 0 / 0 / 0 / 0 / 0
met39 / 3-hydroxy-3-methyl-glutaryl-CoA / 0 / 1 / 0 / 0 / 0 / 0
met40 / 3-hydroxy-isobutyrate / 1 / 0 / 1 / 0 / 0 / 0
met41 / 3-hydroxy-isobutyryl-CoA / 0 / 1 / 0 / 0 / 0 / 0
met43 / 3-hydroxypropionyl-CoA / 0 / 1 / 0 / 0 / 0 / 0
met44 / 3-hydroxybenzoate / 1 / 0 / 0 / 1 / 0 / 0
met45 / acetoacetate / 0 / 1 / 0 / 0 / 1 / 0
met46 / 3-mercaptopyruvate / 0 / 0 / 1 / 0 / 0 / 0
met47 / 3-methylcrotonyl-CoA / 0 / 1 / 0 / 0 / 0 / 0
met49 / 3-hydroxybenzyl alcohol / 1 / 0 / 0 / 1 / 0 / 0
met50 / 3-oxo-palmitoyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met51 / 3-phospho-hydroxypyruvate / 0 / 1 / 1 / 0 / 0 / 0
met53 / 3-sulfinoalanine / 1 / 1 / 1 / 0 / 0 / 0
met58 / 4-aminobutanal / 1 / 1 / 1 / 0 / 0 / 0
met60 / 4-coumaroylquinate / 0 / 1 / 0 / 1 / 0 / 0
met75 / N5-formyl-THF / 1 / 1 / 0 / 0 / 0 / 0
met77 / 5-hydroxy-ferulic-acid / 0 / 0 / 1 / 1 / 0 / 0
met79 / 5-hydroxyisourate / 0 / 0 / 1 / 0 / 1 / 0
met80 / 5-methyl-THF / 1 / 0 / 0 / 0 / 1 / 0
met81 / 5'-methylthioadenosine / 0 / 1 / 0 / 0 / 0 / 0
met85 / 5-phospho-ribosyl-glycineamide / 1 / 1 / 0 / 0 / 0 / 0
met86 / 5-aminoimidazole ribonucleotide / 1 / 1 / 0 / 0 / 0 / 0
met88 / 5,7,22,24(28)-ergostatetraenol / 1 / 0 / 0 / 1 / 0 / 0
met89 / 5,7,24(28)-ergostatrienol / 1 / 0 / 0 / 0 / 0 / 0
met90 / (5Z,13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprosta-5,13-dienoate / 0 / 0 / 1 / 0 / 0 / 0
met91 / 7,8-dihydropteroate / 0 / 1 / 0 / 0 / 0 / 0
met102 / O-acetyl-L-serine / 0 / 0 / 1 / 0 / 0 / 0
met104 / acrylate / 0 / 1 / 0 / 0 / 0 / 0
met105 / acrylonitrile / 0 / 1 / 0 / 0 / 0 / 0
met107 / adenine / 0 / 0 / 0 / 0 / 1 / 0
met108 / adenosine / 0 / 0 / 0 / 0 / 0 / 1
met110 / S-adenosyl-L-homocysteine / 1 / 0 / 0 / 0 / 0 / 0
met112 / ADP / 0 / 0 / 1 / 1 / 0 / 0
met114 / agmatine / 0 / 1 / 0 / 0 / 0 / 0
met122 / alpha-D-glucose-6-phosphate / 1 / 0 / 0 / 0 / 0 / 0
met123 / alpha-D-glucose / 0 / 1 / 0 / 0 / 0 / 0
met124 / alpha-tocopherol / 1 / 0 / 0 / 0 / 0 / 0
met130 / AMP / 1 / 1 / 0 / 0 / 0 / 0
met131 / androst-4-ene-3,17-dione / 0 / 1 / 1 / 0 / 0 / 0
met132 / anthranilate / 0 / 1 / 0 / 0 / 0 / 0
met135 / arachidonate / 1 / 0 / 1 / 0 / 0 / 0
met136 / arachidonyl-CoA / 1 / 0 / 1 / 0 / 0 / 0
met137 / L-arginine / 0 / 1 / 0 / 0 / 0 / 0
met139 / L-ascorbate / 1 / 0 / 0 / 0 / 0 / 0
met140 / L-asparagine / 1 / 1 / 0 / 0 / 0 / 0
met141 / ATP / 1 / 1 / 0 / 0 / 0 / 1
met145 / beta-tocopherol / 1 / 0 / 0 / 0 / 0 / 0
met154 / Butanoyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met156 / D-Arabinose / 0 / 1 / 1 / 0 / 0 / 0
met157 / Methylamine / 0 / 1 / 0 / 0 / 0 / 0
met160 / Aniline / 1 / 1 / 0 / 0 / 0 / 0
met161 / DL-Glutamate / 1 / 1 / 1 / 0 / 0 / 0
met165 / Quercetin / 0 / 0 / 1 / 0 / 0 / 0
met167 / L-Cysteate / 1 / 1 / 1 / 0 / 0 / 0
met171 / Dimethylamine / 1 / 0 / 0 / 0 / 0 / 0
met175 / 3-Hydroxyanthranilate / 1 / 1 / 0 / 0 / 0 / 0
met176 / Prostaglandin F2alpha / 1 / 0 / 1 / 0 / 0 / 0
met179 / Prostaglandin D2 / 1 / 1 / 0 / 0 / 0 / 0
met183 / D-Glucarate / 0 / 0 / 0 / 0 / 1 / 0
met186 / 2-Oxoglutaramate / 0 / 1 / 0 / 0 / 0 / 0
met190 / L-Fuculose 1-phosphate / 1 / 0 / 0 / 0 / 0 / 0
met195 / Desmosterol / 0 / 0 / 0 / 0 / 1 / 0
met196 / Aminoacetone / 0 / 0 / 0 / 0 / 1 / 0
met201 / Methylmalonate / 0 / 0 / 0 / 1 / 1 / 0
met209 / Galactosylceramide / 0 / 0 / 0 / 0 / 1 / 0
met210 / N-Acetylputrescine / 0 / 0 / 1 / 0 / 0 / 0
met218 / 5-Hydroxymethyluracil / 1 / 0 / 0 / 0 / 0 / 1
met220 / N2-Succinyl-L-arginine / 0 / 0 / 0 / 0 / 1 / 0
met224 / 1-Alkenyl-2-acylglycerol / 1 / 0 / 0 / 1 / 1 / 0
met226 / myo-Inositol 4-phosphate / 1 / 0 / 0 / 0 / 0 / 0
met230 / 2,3-Dihydroxy-3-methylbutanoate / 1 / 1 / 0 / 0 / 0 / 0
met232 / 1-Organyl-2-lyso-sn-glycero-3-phosphocholine / 0 / 0 / 0 / 1 / 0 / 0
met233 / N-Acetyl-alpha-D-glucosamine 1-phosphate / 1 / 0 / 0 / 0 / 0 / 0
met234 / Fecosterol / 0 / 0 / 0 / 0 / 1 / 0
met237 / 2-Acetyl-1-alkyl-sn-glycero-3-phosphocholine / 0 / 0 / 0 / 1 / 0 / 0
met241 / O-1-Alk-1-enyl-2-acyl-sn-glycero-3-phosphoethanolamine / 1 / 0 / 0 / 1 / 1 / 0
met242 / 2-(alpha-Hydroxyethyl)thiamine diphosphate / 0 / 1 / 0 / 0 / 0 / 0
met244 / 4-Imidazolone-5-acetate / 0 / 0 / 1 / 0 / 0 / 0
met247 / 3-Oxotetradecanoyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met249 / 3-Oxododecanoyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met251 / 3-Oxodecanoyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met253 / 3-Oxooctanoyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met255 / 3-Oxohexanoyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met256 / trans-Hex-2-enoyl-CoA / 1 / 1 / 1 / 0 / 0 / 0
met257 / trans-Hexadec-2-enoyl-CoA / 1 / 1 / 1 / 0 / 0 / 0
met258 / trans-Tetradec-2-enoyl-CoA / 1 / 1 / 1 / 0 / 0 / 0
met259 / trans-Dec-2-enoyl-CoA / 1 / 1 / 1 / 0 / 0 / 0
met260 / trans-Oct-2-enoyl-CoA / 1 / 1 / 1 / 0 / 0 / 0
met281 / Selenite / 0 / 0 / 1 / 0 / 0 / 0
met282 / 3'-Phosphoadenylylselenate / 1 / 0 / 0 / 0 / 0 / 0
met283 / Selenohomocysteine / 1 / 1 / 0 / 0 / 0 / 0
met284 / Selenocystathionine / 1 / 1 / 0 / 0 / 0 / 0
met288 / trans-Hexadec-2-enoyl-[acp] / 1 / 0 / 0 / 0 / 0 / 0
met289 / Hexadecanoyl-[acp] / 1 / 0 / 0 / 0 / 0 / 0
met291 / 2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone / 0 / 1 / 0 / 0 / 0 / 0
met298 / L-4-Hydroxyglutamate semialdehyde / 0 / 1 / 0 / 0 / 0 / 0
met300 / Phosphatidylinositol-3,4,5-trisphosphate / 1 / 1 / 0 / 0 / 0 / 0
met304 / (S)-2-Acetolactate / 0 / 1 / 0 / 0 / 0 / 0
met307 / Digalactosylceramide / 0 / 0 / 0 / 0 / 1 / 0
met315 / 1,2-Dihydronaphthalene-1,2-diol / 0 / 0 / 1 / 0 / 0 / 0
met316 / Terephthalate / 1 / 1 / 0 / 0 / 0 / 0
met320 / Nitrobenzene / 1 / 1 / 0 / 0 / 0 / 0
met325 / Benzoyl acetate / 1 / 1 / 1 / 1 / 0 / 0
met326 / Benzoyl acetyl-CoA / 1 / 1 / 1 / 1 / 0 / 0
met331 / Caffeic aldehyde / 0 / 1 / 0 / 1 / 0 / 0
met333 / (S)-1-Phenylethanol / 1 / 1 / 1 / 1 / 0 / 0
met335 / 4,6-Dideoxy-4-oxo-dTDP-D-glucose / 0 / 0 / 0 / 0 / 0 / 1
met336 / 5-Hydroxyconiferyl alcohol / 0 / 0 / 0 / 1 / 0 / 0
met345 / Naphthyl-2-methyl-succinyl-CoA / 0 / 0 / 0 / 0 / 1 / 0
met348 / Naphthyl-2-oxomethyl-succinyl-CoA / 0 / 0 / 0 / 0 / 1 / 0
met351 / 1,4-Dihydroxynaphthalene / 0 / 0 / 0 / 0 / 1 / 0
met357 / 2-Acyl-1-(1-alkenyl)-sn-glycero-3-phosphate / 0 / 0 / 0 / 0 / 1 / 0
met359 / Phenylacetonitrile / 0 / 0 / 0 / 1 / 0 / 0
met362 / (22R,23R)-22,23-Dihydroxy-campest-4-en-3-one / 0 / 0 / 1 / 0 / 0 / 1
met383 / Uracil 5-carbaldehyde / 0 / 0 / 0 / 0 / 0 / 1
met391 / 2-Polyprenyl-6-methoxyphenol / 0 / 1 / 0 / 0 / 0 / 0
met393 / 3-Polyprenyl-4-hydroxy-5-methoxybenzoate / 0 / 1 / 0 / 0 / 0 / 0
met395 / caffeate / 0 / 0 / 0 / 1 / 0 / 0
met397 / caffeoylquinate / 1 / 0 / 0 / 0 / 0 / 0
met398 / caffeoylshikimate / 1 / 0 / 0 / 1 / 0 / 0
met400 / canavanine / 1 / 1 / 0 / 0 / 0 / 0
met402 / carbamate / 1 / 0 / 0 / 0 / 0 / 0
met403 / carbamoyl-phosphate / 1 / 0 / 0 / 0 / 0 / 0
met405 / CO2 / 1 / 1 / 1 / 1 / 1 / 1
met411 / CDP-ethanolamine / 0 / 1 / 0 / 1 / 0 / 0
met414 / cellulose / 1 / 0 / 0 / 1 / 1 / 1
met415 / methylmalonate-semialdehyde / 1 / 0 / 0 / 1 / 1 / 0
met416 / 5'-deoxyadenosine / 1 / 1 / 0 / 0 / 0 / 0
met417 / chlorophyll a / 1 / 0 / 0 / 0 / 0 / 0
met422 / chorismate / 0 / 1 / 0 / 0 / 0 / 0
met426 / citrate / 0 / 0 / 1 / 0 / 1 / 0
met427 / CMP / 0 / 0 / 0 / 1 / 0 / 0
met428 / coenzyme A / 1 / 1 / 1 / 1 / 1 / 0
met430 / coniferyl aldehyde / 0 / 0 / 1 / 0 / 0 / 0
met431 / coproporphyrinogen III / 1 / 1 / 0 / 0 / 0 / 0
met432 / coumaraldehyde / 0 / 0 / 1 / 0 / 0 / 0
met436 / decanoyl-CoA / 1 / 0 / 1 / 0 / 0 / 0
met437 / 2-hydroxy-2-methylbutyronitrile / 1 / 0 / 0 / 0 / 0 / 0
met438 / lotaustralin / 1 / 0 / 0 / 0 / 0 / 0
met447 / methyl indole-3-acetate / 0 / 0 / 0 / 1 / 0 / 0
met451 / quercetin 3, 7, 3', 4'-tetrasulphate / 0 / 0 / 1 / 0 / 0 / 0
met453 / raffinose / 1 / 0 / 0 / 0 / 0 / 0
met454 / salicylate / 0 / 0 / 0 / 0 / 1 / 0
met457 / 1-phosphatidyl-1D-myo-inositol 4-phosphate / 1 / 1 / 0 / 0 / 0 / 1
met458 / cis-2-methylaconitate / 0 / 0 / 0 / 1 / 0 / 0
met461 / phosphatidyl-N-dimethylethanolamine / 0 / 0 / 0 / 1 / 0 / 0
met462 / dolichyl beta-D-glucosyl phosphate / 0 / 0 / 0 / 1 / 0 / 0
met463 / stachyose / 1 / 0 / 0 / 1 / 0 / 0
met464 / dolichyl beta-D-mannosyl phosphate / 0 / 0 / 0 / 1 / 0 / 0
met465 / coniferin / 0 / 0 / 0 / 1 / 0 / 0
met466 / D-myo-inositol (3,4,5,6)-tetrakisphosphate / 0 / 1 / 0 / 0 / 0 / 0
met467 / linoleoyl-CoA / 1 / 0 / 1 / 1 / 0 / 0
met470 / indolylmethylthiohydroximate / 0 / 1 / 0 / 1 / 0 / 0
met472 / indol-3-ylmethyl glucosinolate / 1 / 0 / 0 / 0 / 0 / 0
met473 / 18:1-16:0-MGDG / 1 / 1 / 0 / 0 / 0 / 0
met480 / 2-trans-Hexadecenal / 0 / 0 / 0 / 1 / 0 / 0
met481 / 6-phospho-D-gluconate / 1 / 1 / 1 / 0 / 0 / 0
met482 / isoliquiritigenin / 1 / 0 / 0 / 0 / 0 / 0
met483 / liquiritigenin / 1 / 0 / 0 / 0 / 0 / 0
met486 / L-galactono-1,4-lactone / 0 / 1 / 0 / 0 / 0 / 0
met491 / (22alpha)-hydroxy-campesterol / 0 / 0 / 0 / 1 / 0 / 0
met497 / 4-coumaroylshikimate / 0 / 0 / 0 / 1 / 0 / 0
met503 / 7-dehydro-cholesterol / 0 / 0 / 0 / 1 / 0 / 0
met510 / isopentenyl adenosine / 1 / 0 / 0 / 1 / 1 / 0
met511 / trans-zeatin riboside / 0 / 0 / 0 / 1 / 1 / 0
met512 / isopentenyladenine / 1 / 0 / 0 / 1 / 1 / 0
met513 / trans-zeatin / 1 / 0 / 0 / 1 / 1 / 0
met524 / 5alpha-cholesta-8,24-dien-3-one / 0 / 0 / 0 / 1 / 1 / 0
met529 / N-acetyl-L-glutamate 5-semialdehyde / 1 / 0 / 0 / 0 / 0 / 0
met533 / beta-L-fucose 1-phosphate / 1 / 0 / 0 / 0 / 0 / 1
met537 / D-myo-inositol (1,3,4,5)-tetrakisphosphate / 1 / 0 / 0 / 0 / 0 / 0
met538 / alpha-D-glucuronate 1-phosphate / 0 / 0 / 0 / 0 / 1 / 0
met542 / N-dimethylethanolamine phosphate / 0 / 0 / 0 / 1 / 0 / 0
met543 / S-formylglutathione / 0 / 0 / 1 / 0 / 0 / 0
met549 / 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H imidazole-5-carboxylate / 0 / 0 / 1 / 0 / 1 / 0
met555 / 3-cyano-L-alanine / 0 / 1 / 0 / 0 / 0 / 0
met556 / 3-aminopropionaldehyde / 1 / 1 / 1 / 0 / 0 / 0
met558 / thiamin triphosphate / 0 / 1 / 0 / 0 / 0 / 1
met559 / N-methyl-beta-alanine / 0 / 1 / 1 / 0 / 0 / 0
met564 / methylsalicylate / 0 / 0 / 0 / 1 / 0 / 0
met566 / sphinganine 1-phosphate / 0 / 0 / 0 / 1 / 1 / 0
met575 / O-acetyl-L-homoserine / 1 / 0 / 0 / 0 / 0 / 0
met579 / D-myo-inositol (1,2,3,5,6) pentakisphosphate / 1 / 0 / 0 / 0 / 1 / 0
met586 / selenide / 1 / 0 / 1 / 0 / 0 / 0
met591 / 2,4,6-trihydroxybenzophenone / 1 / 0 / 1 / 1 / 1 / 0
met592 / cyanate / 1 / 0 / 0 / 0 / 0 / 0
met595 / 4-(2'-carboxyphenyl)-4-oxobutyryl-CoA / 0 / 0 / 1 / 0 / 0 / 0
met596 / campest-4-en-3-one / 0 / 0 / 0 / 1 / 0 / 0
met597 / rosmarinic acid / 0 / 1 / 0 / 0 / 0 / 0
met612 / campesterol / 0 / 0 / 0 / 1 / 0 / 0
met617 / 6-deoxocathasterone / 0 / 0 / 0 / 1 / 0 / 1
met621 / 6-deoxoteasterone / 0 / 1 / 0 / 0 / 0 / 0
met622 / 3-dehydro-6-deoxoteasterone / 0 / 1 / 0 / 0 / 0 / 0
met623 / 3-dehydroteasterone / 0 / 1 / 0 / 0 / 0 / 0
met624 / typhasterol / 0 / 1 / 0 / 0 / 0 / 0
met625 / 6-deoxotyphasterol / 0 / 0 / 1 / 1 / 0 / 0
met626 / 2-trans-dodecenoyl-CoA / 1 / 1 / 1 / 0 / 0 / 0
met627 / 2-cis,4-trans-xanthoxin / 1 / 0 / 0 / 0 / 0 / 0
met628 / (+)-7-iso-jasmonate / 0 / 1 / 1 / 0 / 0 / 0
met637 / methanethiol / 1 / 0 / 0 / 0 / 0 / 0
met643 / verbascose / 1 / 0 / 0 / 1 / 1 / 0
met645 / 18:2-16:0-MGDG / 0 / 1 / 0 / 1 / 0 / 0
met646 / 18:3-16:0-MGDG / 0 / 1 / 0 / 1 / 0 / 0
met647 / 18:2-16:1-MGDG / 1 / 0 / 0 / 1 / 0 / 0
met648 / 18:3-16:1-MGDG / 1 / 0 / 0 / 1 / 0 / 0
met649 / 18:1-16:2-MGDG / 1 / 0 / 0 / 1 / 0 / 0
met651 / 18:1-16:3-MGDG / 1 / 0 / 0 / 1 / 0 / 0
met654 / 3-(2-propenoic acid)-4,6-hydroxy cyclohexa-2,5-dienone / 0 / 0 / 1 / 0 / 0 / 0
met657 / cis-caffeate / 0 / 1 / 0 / 0 / 0 / 0
met659 / 18:1-16:0-DGDG / 1 / 1 / 0 / 0 / 0 / 0
met660 / 18:2-16:0-DGDG / 0 / 1 / 0 / 1 / 0 / 0
met661 / 18:3-16:0-DGDG / 0 / 1 / 0 / 1 / 0 / 0
met667 / N2-succinyl-L-glutamate 5-semialdehyde / 0 / 0 / 1 / 0 / 0 / 1
met669 / manninotriose / 0 / 1 / 0 / 0 / 0 / 0
met686 / 2-hydroxyferulate / 0 / 1 / 0 / 0 / 0 / 0
met687 / (1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate / 1 / 0 / 0 / 0 / 0 / 0
met689 / 1,4-dihydroxy-2-naphthoyl-CoA / 0 / 0 / 1 / 0 / 0 / 0
met695 / OPC8-3-ketoacyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met696 / OPC6-CoA / 0 / 1 / 1 / 0 / 0 / 0
met698 / OPC6-3-ketoacyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met699 / OPC4-CoA / 0 / 0 / 1 / 0 / 0 / 0
met700 / OPC4-trans-2-enoyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met701 / OPC4-3-ketoacyl-CoA / 0 / 1 / 1 / 0 / 0 / 0
met703 / trans-lycopene / 1 / 0 / 0 / 0 / 0 / 0
met706 / gamma-carotene / 1 / 0 / 0 / 0 / 0 / 0
met707 / beta-carotene / 1 / 0 / 0 / 0 / 0 / 0
met712 / C25-allenic-apo-aldehyde / 1 / 0 / 0 / 0 / 0 / 0
met720 / CTP / 0 / 0 / 0 / 0 / 0 / 1
met721 / L-cysteine / 0 / 0 / 0 / 0 / 1 / 0