Additional File 3:

Map positions, location, allele frequency and allelic

R2 values for SNPs from FCER1B.

dbSNP number / Map position
on 11q13 / Location / MAF / Allelic R2
ss28514786* / 5961007 / 5UTR / 0.005 / -
ss28514787* / 59610402 / 5UTR / 0.005 / -
rs2847659 / 59610428 / 5UTR / 0.42 / 81.095
rs2583477 / 59610431 / 5UTR / 0.47 / tag
ss28514790* / 59611667 / 5UTR / 0.01 / -
ss28514791* / 59611822 / 5UTR / 0.01 / -
rs573790 / 59611961 / 5UTR / 0.34 / tag
rs574700 / 59612059 / 5UTR / 0.02 / -
rs1441585 / 59612287 / 5UTR / 0.02 / -
rs1441586 / 59612604 / 5UTR / 0.44 / 93.153
ss28514796* / 59612898 / intron 1 / 0.01 / -
rs2847662 / 59613257 / intron 1 / 0.02 / -
ss28514798* / 59613397 / intron 1 / 0.005 / -
ss28514799* / 59613956 / intron 2 / 0.005 / -
ss28514800* / 59614031 / intron 2 / 0.005 / -
rs2583476 / 59614157 / intron 2 / 0.41 / tag
rs2847663 / 59614612 / intron 3 / 0.43 / 89.842
ss28514803* / 59615620 / intron 3 / 0.005 / -
rs502581 / 59616754 / intron 3 / 0.46 / 95.223
ss28514805* / 59616934 / intron 4 / 0.01 / -
ss28514806* / 59617154 / intron 4 / 0.01 / -
ss28514807 / 59617853 / intron 4 / Microsatellite / -
rs2583471 / 59618390 / intron 6 / 0.41 / 99.003
ss28514808* / 59619606 / exon 7 / 0.005 / -
ss28514809* / 59619648 / exon 7 / 0.01 / -
rs11230141 / 59621723 / 3UTR / 0.06 / 90.913
rs2847655 / 59622247 / 3UTR / 0.42 / 92.215
ss28514812* / 59622409 / 3UTR / 0.02 / -
rs502419 / 59622751 / 3UTR / 0.44 / 95.207
rs2855017 / 59622885 / 3UTR / 0.44 / 94.186
ss28514815* / 59623955 / 3UTR / 0.43 / 95.228
rs12576889 / 59624157 / 3UTR / 0.05 / tag
ss28514817* / 59624482 / 3UTR / 0.01 / -
rs574704 / 59624489 / 3UTR / 0.5 / tag
ss28514819* / 59625068 / 3UTR / 0.006 / -

MAF- minor allele frequency from 96 type 1 diabetes individuals, map position based on NCBI build 35, tag- tag SNP used for genotyping, * indicates novel SNP, Allelic R2 value- this is > 80.00 for SNPs that will be captured by the tag SNPs.