Table S2. Core and satellite taxa found in LD soil with 16S rDNAgene pyrosequencing and in LCSA and LD soil with microarray analysis.
A - Core and satellite taxa found in LD soil with 16S rRNA gene V4 variable regionpyrosequencing.
Satellite taxa (182)microsample 1: 9 taxa
Aureispira spp.
Bacteriovorax marinus
Bradyrhizobium japonicum
Candidatus_fritschea candidatus fritschea_bemisiae
Desulfuromonas michiganensis
Phormidium pseudopristleyi
Saccharospirillum spp.
Weeksella spp.
Zoogloea ramigera
microsample 2: 12 taxa
Acinetobacter septicus
Alkanindiges illinoisensis
Chryseobacterium bovis
Corynebacterium kutscheri
Corynebacterium vitaeruminis
Deinococcus cellulolytica
Luteolibacter pohnpeiensis
Mesorhizobium plurifarium
Nocardia lijiangensis
Prosthecobacter vanneervenii
Rhodothermus marinus
Spirochaeta aurantia
microsample 3: 9 taxa
Acetivibrio spp.
Bacillus trypoxylicola
Candidatus_jettenia spp.
Kribbella spp.
Kushneria spp.
Lewinella marina
Litorilinea aerophila
Pelotomaculum propionicicum
Streptomyces torulosus
microsample 4: 3 taxa
Aquimonas spp.
Kangiella koreensis
Ruminiclostridium clostridium thermocellum
microsample 5: 12 taxa
Azotobacter chroococcum
Candidatus_midichloria spp.
Desulfomicrobium terraneus
Desulfovibrio putealis
Hydrogenophaga taeniospiralis
Kriegella aquimaris
Marvinbryantia spp.
Microbulbifer variabilis
Mycoplasma phocidae
Saccharomonospora azurea
Sphingopyxis witflariensis
Thermopolyspora compost metagenome
microsample 6: 9 taxa
Aerococcus viridans
Anabaenopsis spp.
Arcobacter cryaerophilus
Desulfobacter vibrioformis
Legionella steigerwaltii
Marinoscillum furvescens
Proteiniclasticum spp.
Streptomyces thermolineatus
Telmatospirillum siberiense
microsample 7: 11 taxa
Abiotrophia defectiva
Acetobacter aceti
Agromyces ulmi
Burkholderia ubonensis
Candidatus_xiphinematobacter candidatus xiphinematobacter_rivesi
Corynebacterium aurimucosum
Enterobacter hormaechei
Erysipelothrix rhusiopathiae
Legionella lytica
Psychrobacter glacincola
Veillonella spp.
microsample 8: 5 taxa
Chromobacterium violaceum
Filimonas lacunae
Maricaulis washingtonensis
Megamonas spp.
Sulfobacillus sibiricus
microsample 9: 7 taxa
Anaplasma centrale
Deinococcus aquatilis
Paenibacillus ginsengisoli
Propionibacterium acnes
Pseudoruegeria spp.
Rheinheimera spp.
Streptomyces seoulensis
microsample 10: 5 taxa
Coraliomargarita spp.
Desulfovibrio defluvii
Gordonia bronchialis
Kordiimonas spp.
Robinsoniella spp.
microsample 11: 4 taxa
Candidatus legionella_jeonii
Pseudomonas alcaligenes
Rhodospirillum sulfurexigens
Streptomyces hygroscopicus
microsample 12: 10 taxa
Bartonella spp.
Desulfovibrio desulfuricans
Hyphomonas johnsonii
Methylomonas methanica
Nocardia cummidelens
Ochrobactrum intermedium
Prevotella spp.
Roseomonas ludipueritiae
Rothia mucilaginosa
Tetrasphaera jenkinsii
microsample 13: 11 taxa
Acetobacter peroxydans
Candidatus cardinium cardinium endosymbiont of bemisia tabaci
Desulfomonile limimaris
Desulfovibrio mexicanus
Garciella spp.
Larkinella insperata
Legionella erythra
Nostoc spp.
Stappia spp.
Streptoalloteichus streptomyces tenebrarius
Tropicimonas spp.
microsample 14: 6 taxa
Fibrobacter succinogenes
Legionella quinlivanii
Planctomyces brasiliensis
Ruminiclostridium clostridium thermosuccinogenes
Tatlockia maceachernii
Thiomicrospira marine metagenome
microsample 15: 14 taxa
Alkalibacter spp.
Alterococcus spp.
Candidatus cardinium cardinium endosymbiont of tetranychus cinnabarinus
Candidatus_symbiothrix spp.
Haloferula rosea
Halomonas sediminis
Methylobacterium iners
Planktothricoides spp.
Rhodobacter vinaykumaraii
Roseospira spp.
Symbiobacterium thermophilum
Tetrasphaera australiensis
Thermoflavimicrobium spp.
Ureibacillus thermosphaericus
microsample 16: taxa2
Erythrobacter aquimaris
Natranaerobius thermophilus
microsample 17: 15 taxa
Aneurinibacillus migulanus
Candidatus_blochmannia candidatus blochmannia_festinatus
Coprococcus eutactus
Desulfotalea spp.
Enterorhabdus spp.
Flavonifractor clostridium orbiscindens
Fulvimonas spp.
Hydrogenophaga spp.
Nocardia nova
Paucimonas spp.
Peptostreptococcus spp.
Prochlorococcus spp.
Promicromonospora kroppenstedtii
tTpidibacter formicigenes
Zymomonas mobilis
microsample 18 :5 taxa
Brachybacterium paraconglomeratum
Loktanella spp.
Parasutterella spp.
Planctomyces limnophilus
Saccharopolyspora gregorii
microsample 19: 12 taxa
Acinetobacter piperi
Actinopolyspora spp.
Aeromicrobium ginsengisoli
Bilophila spp.
Elizabethkingia meningoseptica
Geitlerinema spp.
Ilumatobacter fluminis
Laribacter hongkongensis
Legionella brunensis
Paenibacillus ourofinensis
Prosthecochloris vibrioformis
Roseomonas lacus
microsample 20: 10 taxa
Acanthopleuribacter pedis
Chitinimonas taiwanensis
Epulopiscium spp.
Gloeotrichia echinulata
Rhodococcus wratislaviensis
Shinella zoogloeoides
Solitalea canadensis
Streptomyces sulphureus
Terrimonas ferruginea
Thiobacillus aquaesulis
microsample 21: 6 taxa
Akkermansia muciniphila
Catelliglobosispora spp.
Desulfobulbus propionicus
Geobacillus thermodenitrificans
Hydrogenophilus spp.
Paenibacillus sabina
microsample 22: 5 taxa
Albimonas spp.
Desulforhabdus spp.
Desulfotignum spp.
Nostoc commune
Roseibacillus spp.
Coretaxa ( 426)
Acanthopleuribacter spp.Acaricomes phytoseiuli
Achromobacter spp.
Acidicaldus spp.
Acidimicrobiales spp.
Acidiphilium spp.
Acidisoma sibirica
Acidisoma spp.
Acidisphaera spp.
Acidobacterium spp.
Acidocella spp.
Acidothermus spp.
Acidovorax delafieldii
Acidovorax konjaci
Acidovorax sp.
Acidovorax spp.
Actinospica spp.
Adhaeribacter spp.
Aeromicrobium kwangyangensis
Aetherobacter rufus
Afipia spp.
Agrobacterium tumefaciens
Agromyces spp.
Akkermansia spp.
Albidiferax spp.
Alicycliphilus spp.
Altererythrobacter spp.
Ammoniphilus oxalaticus
Anaerolinea spp.
Anaeromyxobacter spp.
Ancylobacter rudongensis
Anderseniella spp.
Angustibacter spp.
Anoxybacillus tunensis
Aquabacterium spp.
Aquicella spp.
Arcobacter spp.
Arenimonas spp.
Armatimonas spp.
Arthrobacter agilis
Arthrobacter crystallopoietes
Arthrobacter kerguelensis
Arthrobacter nicotinovorans
Arthrobacter sp.
Arthrobacter spp.
Asaia siamensis
Asticcacaulis biprosthecium
Asticcacaulis spp.
Azospira spp.
Azospirillum amazonense
Azospirillum brasilense
Azospirillum spp.
Bacillus asahii
Bacillus firmus
Bacillus foraminis
Bacillus licheniformis
Bacillus longiquaesitum
Bacillus selenatarsenatis
Bacillus sp.
Bacillus sporothermodurans
Bacillus thermoamylovorans
Barnesiella spp.
Bdellovibrio spp.
Beijerinckia derxii
Beijerinckia mobilis
Bellilinea spp.
Blastochloris spp.
Blastochloris viridis
Blastococcus saxobsidens
Blastococcus spp.
Blastomonas spp.
Blastopirellula spp.
Bradyrhizobium elkanii
Bradyrhizobium lupini
Bradyrhizobium sp.
Bradyrhizobium spp.
Branchiibius hedensis
Brevundimonas diminuta
Brevundimonas spp.
Brevundimonas subvibrioides
Burkholderia cepacia
Burkholderia glathei
Burkholderia multivorans
Burkholderia phymatum
Burkholderia sordidicola
Burkholderia sp.
Burkholderia spp.
Burkholderia tuberum
Burkholderia xenovorans
Byssovorax spp.
Caenimonas spp.
Caldalkalibacillus spp.
Caldibacillus geobacillus debilis
Caldicoprobacter spp.
Caldilinea spp.
Caldimonas hydrothermale
Candidatus burkholderia kirkii
Candidatus burkholderia_calva
Candidatus neoehrlichia mikurensis
Candidatus pelagibacter ubique
Candidatus solibacter usitatus
Candidatus_alysiosphaera spp.
Candidatus_chloracidobacterium spp.
Candidatus_chlorothrix spp.
Candidatus_entotheonella spp.
Candidatus_koribacter spp.
Candidatus_liberibacter spp.
Candidatus_methylacidiphilum spp.
Candidatus_microthrix spp.
Candidatus_odyssella spp.
Candidatus_rhabdochlamydia spp.
Candidatus_ruthia candidatus ruthia_
magnifica_str._cm_(calyptogena_magnifica)
Candidatus_solibacter spp.
Candidatus_xiphinematobacter spp.
Candidatus_zinderia candidatus zinderia_
insecticola_cari
Carboxydothermus siderophilus
Caulobacter henricii
Caulobacter spp.
Cerasicoccus spp.
Chitinophaga spp.
Chloroflexus spp.
Chroococcidiopsis spp.
Chthoniobacter spp.
Chthonomonas calidirosea
Cloacibacterium spp.
Clostridium homopropionicum
Clostridium spp.
Cohnella spp.
Collinsella spp.
Comamonas spp.
Conexibacter spp.
Coprococcus spp.
Coprothermobacter spp.
Corynebacteriales spp.
Corynebacterium diphtheriae
Crossiella spp.
Cryocola spp.
Cryptosporangium japonicum
Cupriavidus metallidurans
Cystobacter violaceus
Cystobacterineae spp.
Defluviicoccus spp.
Deinococcus spp.
Dermatophilus spp.
Desulfobulbus spp.
Desulfomonile spp.
Desulforhopalus spp.
Desulfosalsimonas spp.
Desulfosporosinus meridiei
Desulfotomaculum aeronauticum
Desulfotomaculum hydrothermal vent
Desulfuromonas spp.
Devosia insulae
Devosia spp.
Dokdonella spp.
Dongia spp.
Dyella ginsengisoli
Ectothiorhodospira imhoffii
Edaphobacter modestum
Edaphobacter spp.
Elusimicrobium spp.
Enterobacter spp.
Escherichia_shigella spp.
Euzebya spp.
Ferrithrix spp.
Ferruginibacter spp.
Filomicrobium spp.
Flavihumibacter spp.
Flavisolibacter spp.
Flexibacter spp.
Frankia sp.
Frankia spp.
Frankiales spp.
Frateuria soli
Frigoribacterium spp.
Gelria spp.
Gemmata obscuriglobus
Gemmata spp.
Gemmatimonas spp.
Geoalkalibacter spp.
Geobacillus spp.
Geobacillus thermocatenulatus
Geobacter spp.
Geodermatophilus obscurus
Geodermatophilus spp.
Georgenia spp.
Geothermobacter spp.
Glaciibacter superstes
Gluconacetobacter spp.
Granulicella spp.
Haliangium spp.
Haloferula spp.
Halothiobacillus kellyi
Herbaspirillum spp.
Hirschia spp.
Holospora spp.
Humicoccus spp.
Hydrotalea spp.
Hylemonella spp.
Hymenobacter spp.
Hyphomicrobium spp.
Iamia spp.
Ilumatobacter spp.
Inquilinus spp.
Isosphaera spp.
Janibacter spp.
Kaistobacter spp.
Kineosporia spp.
Knoellia sinensis
Knoellia subterranea
Ktedonobacter spp.
Labrys portucalensis
Labrys spp.
Legionella spp.
Leptospirillum spp.
Leptothrix spp.
Limnobacter spp.
Limnohabitans curvus
Longilinea spp.
Luteibacter rhizovicinus
Luteipulveratus mongoliensis
Luteolibacter spp.
Lysinibacillus sphaericus
Lysobacter spp.
Lysobacter taiwanensis
Marisediminicola spp.
Marmoricola spp.
Massilia spp.
Massilia timonae
Meganema spp.
Mesorhizobium loti
Mesorhizobium septentrionale
Methylibium petroleiphilum
Methylibium spp.
Methylobacterium adhaesivum
Methylobacterium soli
Methylobacterium spp.
Methylobacterium tardum
Methylocella tundrae
Methylocystis aldrichii
Methylocystis echinoides
Methylocystis spp.
Methylopila capsulata
Methylosinus spp.
Methylosinus trichosporium
Metyhlovirgula spp.
Micrococcales spp.
Micrococcus luteus
Microcoleus vaginatus
Modestobacter spp.
Moorella spp.
Mucilaginibacter dorajii
Mucilaginibacter spp.
Mycobacterium celatum
Mycobacterium gordonae
Mycobacterium obuense
Mycobacterium triplex
Mycobacterium vanbaalenii
Nakamurella humicoccus flavidus
Nakamurella spp.
Nannocystineae spp.
Nc10 (candidate division) nc10 (candidate
division)
Neorickettsia spp.
Niastella spp.
Nitriliruptor spp.
Nitrobacter hamburgensis
Nitrobacter vulgaris
Nitrobacter winogradskyi
Nitrosococcus spp.
Nitrosovibrio tenuis
Nitrospira spp.
Nocardioides hankookensis
Nocardioides kribbensis
Nocardioides maritimus
Nocardioides plantarum
Nocardioides spp.
Nostocoida type ii nostocoida aromativora
Novosphingobium hassiacum
Novosphingobium spp.
Op1 (candidate division) op1 (candidate
division)
Op3 (candidate division) op3 (candidate
division)
Op9 (candidate division) op9 (candidate
division)
Opitutus spp.
Ornithinicoccus spp.
Ornithinimicrobium spp.
Oryzihumus leptocrescens
Oryzihumus spp.
Owenweeksia spp.
Oxalicibacterium faecigallinarum
Paenibacillus agarexedens
Paenibacillus borealis
Paenibacillus caespitis
Paenibacillus chondroitinus
Paenibacillus koleovorans
Paenibacillus mendelii
Paenibacillus pectinilyticus
Paenibacillus soli
Paenibacillus spp.
Paenibacillus xylanilyticus
Pandoraea spp.
Pantoea agglomerans
Parastreptomyces abscessus
Parvularcula spp.
Patulibacter spp.
Paucibacter toxinivorans
Pedobacter spp.
Pedomicrobium spp.
Pelobacter propionicus
Pelomonas saccharophila
Peptococcus spp.
Phaselicystis spp.
Phenylobacterium spp.
Phycisphaera spp.
Phyllobacterium trifolii
Pilimelia spp.
Pirellula spp.
Piscinibacter spp.
Planctomyces spp.
Planctomycetales nostocoida limicola
Planifilum fulgidum
Planifilum spp.
Pleurocapsa spp.
Polaromonas spp.
Porphyrobacter spp.
Prosthecobacter spp.
Pseudoclavibacter helvolus
Pseudolabrys rhizobiales sp.
Pseudolabrys spp.
Pseudomonas veronii
Pseudonocardia endophyticus
Pseudonocardia halophobica
Pseudonocardia spp.
Psychrobacillus bacillus psychrodurans
Quadrisphaera granulorum
Quadrisphaera spp.
Ralstonia solanacearum
Ramlibacter spp.
Rhizobacter spp.
Rhizobium leguminosarum
Rhizobium loessense
Rhodanobacter spp.
Rhodanobacter terrae
Rhodobacter spp.
Rhodococcus qingshengii
Rhodococcus yunnanensis
Rhodocyclus tenuis
Rhodopila globiformis
Rhodopila spp.
Rhodopirellula spp.
Rhodoplanes spp.
Rhodopseudomonas pangongensis
Rhodopseudomonas spp.
Rhodospirillum centenum
Rhodospirillum sp.
Rhodovastum spp.
Rickettsia spp.
Rickettsiales spp.
Roseiflexus spp.
Roseomonas spp.
Rubrobacter spp.
Rubrobacter xylanophilus
Salinibacterium spp.
Schlesneria spp.
Segetibacter koreensis
Segetibacter spp.
Singulisphaera spp.
Skermanella spp.
Smithella spp.
Solirubrobacter spp.
Solirubrobacterales spp.
Solitalea spp.
Sorangiineae spp.
Sorangium spp.
Spam (candidate division) spam (candidate
division)
Sphaerobacter spp.
Sphaerobacter thermophilus
Sphingobium sphingomonas suberifaciens
Sphingomonas asaccharolytica
Sphingomonas azotifigens
Sphingomonas mali
Sphingomonas panni
Sphingomonas spp.
Sphingomonas wittichii
Sphingopyxis spp.
Spirochaeta spp.
Sporichthya polymorpha
Sporosarcina psychrophila
Sporosarcina spp.
Steroidobacter spp.
Streptomyces armeniacus
Streptomyces sakaiensis
Streptomyces sp.
Streptomyces spp.
Streptomyces turgidiscabies
Streptomyces yanglinensis
Subdoligranulum spp.
Subtercola frigoramans
Subtercola spp.
Syntrophus sp.
Syntrophus spp.
Terrimonas spp.
Thermacetogenium spp.
Thermobaculum terrenum
Thermobispora bispora
Thermocrispum municipale
Thermodesulforhabdus spp.
Thermogemmatispora foliorum
Thermogemmatispora onikobensis
Thermomicrobium spp.
Thermomonas spp.
Thermosporothrix spp.
Thermovirga spp.
Tm6 (candidate division) tm6 (candidate division)
Tm7 (candidate division) tm7 (candidate division)
Tolumonas auensis
Tumebacillus spp.
Undibacterium spp.
Ureibacillus suwonensis
Variovorax paradoxus
Variovorax spp.
Wilmottia phormidium murrayii
Ws3 (candidate division) ws3 (candidate division)
Xanthomonas spp.
Yonghaparkia alkaliphila
Yonghaparkia palkaliphila
Zavarzinella spp.
B - Core and satellite taxa and corresponding probes, for LCSA and LD soils.