Molecular characterization of a novel capillovirus from red currant
Karel Petrzik* ∙ Jaroslava Přibylová ∙ Igor Koloniuk ∙ Josef Špak
Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, v.v.i., Branišovská 31, 370 05 České Budějovice, Czech Republic
Supplementary Fig.1.Phylogenetic NJ tree based on MP aa sequence
Unrooted phylogenetic tree of the MP aa sequences of Capilloviruses and related genera. Neighbor-Joining tree (JTT substitution model) with 1000 bootstrap replicates was produced in MEGA6.
Supplementary Table 1.Pairwise aa sequence comparison of RdRp polyprotein
Divavirus / CapillovirusDiVB / DiVA / HarVA / CVA / CuVA / ASGV
DiVB / 58.5 / 53.3 / 22.7 / 20.7 / 22.4
DiVA / 55.7 / 21.9 / 21.2 / 21.4
HarVA / 21.9 / 21.6 / 22.3
CVA / 50.8 / 20.6
CuVA / 22.2
ASGV
Pairwise identity (%) based on CLUSTALW alignment, BLOSUM cost matrix and gap open cost 10.
Pairwise aa sequence comparison of MP
Chordovirus / Divavirus / Capillovirus / Citrivirus / Prunevirus / Capilloviru / TepovirusCChV2 / CChV1 / DiVA / DiVB / HarVA / CVA / CuVA / CLBV / AVCaV / CPrV / ASGV / PVT / PrVT
AHA85532 / AHA85535 / AFV57239 / AFV57241 / AEB00588 / NC_003689 / CuVA / CAC39423 / CDF66417 / AKN08995 / KF434636 / ACF39933 / AHM92767
CCHV2 / 63.3 / 17.7 / 17.2 / 19.0 / 14.4 / 14.7 / 14.4 / 15.2 / 13.5 / 15.4 / 19.5 / 15.1
CChV1 / 18.4 / 16.6 / 18.9 / 14.6 / 13.7 / 14.2 / 14.2 / 13.2 / 16.6 / 19.7 / 14.5
DiVA / 52.3 / 55.8 / 17.4 / 16.0 / 12.5 / 11.8 / 13.0 / 14.9 / 14.1 / 12.9
DivB / 47.4 / 13.7 / 13.3 / 11.5 / 13.0 / 11.0 / 13.6 / 12.4 / 11.9
HarVA / 17.4 / 17.9 / 13.0 / 15.0 / 13.4 / 16.5 / 15.4 / 13.4
CVA / 57.1 / 9.9 / 9.2 / 10.3 / 15.8 / 12.1 / 10.2
CuVA / 10.4 / 10.0 / 12.3 / 15.6 / 11.9 / 12.8
CLBV / 45.8 / 42.1 / 11.2 / 10.4 / 12.4
AVCaV / 35.3 / 12.3 / 13.4 / 12.4
CPrV / 9.8 / 11.9 / 12.7
ASGV / 15.4 / 12.7
PVT / 18.2
PrVT
Pairwise identity (%) based on CLUSTALW alignment, BLOSUM cost matrix and gap open cost 10.