Appendix. LANDIS-II input parameter files.
A. Species life history parameters.
LandisData Species
> Sexual Shade Fire Seed Dispers Dist Vegetative Sprout Age Post-Fire
>Name Longev Matur Tol. Tol. Effective Maximum Reprod Prob Min Max Regen
>------
abiebal 150 25 4 1 30 160 0.0 0 0 none
acerrub 150 10 3 1 100 200 0.5 10 120 none
acersac 250 40 5 1 100 200 0.1 10 170 none
betuall 300 40 4 2 100 400 0.1 10 100 none
betupap 120 20 2 2 200 5000 0.8 0 100 none
fraxame 200 30 4 1 70 140 0.1 10 70 none
fraxnig 150 20 2 1 100 200 0.5 10 140 none
larilar 175 35 1 1 50 200 0.0 0 0 none
picegla 200 25 3 2 30 200 0.0 0 0 none
picemar 200 30 3 3 80 200 0.0 0 0 none
pinuban 120 10 1 2 30 100 0.0 0 0 serotiny
pinures 250 25 2 4 12 275 0.0 0 0 none
pinustr 350 15 3 3 100 250 0.0 0 0 none
popugra 90 15 1 2 500 5000 1.0 0 90 resprout
poputre 90 15 1 2 500 5000 1.0 0 90 resprout
prunser 200 20 2 1 30 3000 0.5 10 140 resprout
queralb 250 40 1 4 30 3000 0.6 10 100 none
querell 200 35 2 4 30 3000 0.7 10 160 none
querrub 200 25 3 3 30 3000 0.7 10 160 none
thujocc 350 30 3 1 45 60 0.0 0 0 none
tiliame 250 15 4 2 30 200 0.5 10 250 none
tsugcan 450 60 5 3 30 100 0.0 0 0 none
>END FILE
B. Biomass succession extension.
LandisData "Biomass Succession" <v. 3.1
Timestep 10
SeedingAlgorithm WardSeedDispersal
InitialCommunities ..\Oconto_InitCond.txt
InitialCommunitiesMap ..\Oconto_InitCond.gis
> **********************
MinRelativeBiomass
> Shade
> Class Ecoregions
> ------
FR4 FR3 FR2 FR1
1 10% 15% 15% 20%
2 20% 25% 25% 30%
3 45% 50% 50% 55%
4 75% 80% 80% 85%
5 90% 95% 95% 98%
> **************************************************
SufficientLight
> Spp Shade Probability
> Class by Actual Shade
> ------
0 1 2 3 4 5
1 1.0 0.0 0.0 0.0 0.0 0.0
2 1.0 1.0 0.0 0.0 0.0 0.0
3 1.0 1.0 1.0 0.0 0.0 0.0
4 1.0 1.0 1.0 1.0 0.0 0.0
5 0.0 0.0 1.0 1.0 1.0 1.0
SpeciesParameters
> Species Leaf WoodyBiomass Mortality Growth Leaf
Longevity DecayRate ShapeParam Shape Lignin%
> ------
abiebal 3.0 0.1 10 0.25 0.2
acerrub 1.0 0.1 10 0.25 0.1
acersac 1.0 0.1 10 0.25 0.1
betuall 1.0 0.1 10 0.25 0.1
betupap 1.0 0.1 10 0.25 0.1
fraxame 1.0 0.1 10 0.25 0.1
fraxnig 1.0 0.1 10 0.25 0.1
larilar 1.0 0.1 10 0.25 0.2
picegla 3.0 0.1 10 0.25 0.2
picemar 3.0 0.1 10 0.25 0.2
pinuban 3.0 0.1 10 0.25 0.3
pinures 3.0 0.1 10 0.25 0.3
pinustr 3.0 0.1 10 0.25 0.3
popugra 1.0 0.1 10 0.25 0.1
poputre 1.0 0.1 10 0.25 0.1
prunser 1.0 0.1 10 0.25 0.1
queralb 1.0 0.1 10 0.25 0.15
querell 1.0 0.1 10 0.25 0.15
querrub 1.0 0.1 10 0.25 0.15
thujocc 4.0 0.1 10 0.25 0.2
tiliame 1.0 0.1 10 0.25 0.1
tsugcan 3.0 0.1 10 0.25 0.2
EcoregionParameters
> AET
> mm
FR1 600
FR2 600
FR3 600
FR4 600
DynamicInputFile ..\Oconto-succession-dynamic-inputs.txt
AgeOnlyDisturbances:BiomassParameters ..\biomass_age-disturbances.txt
> END FILE
C. Succession Dynamic Inputs
LandisData "Dynamic Input Data" < parameters govern the SOIL effect
> Year Ecoregion Species ProbEst MaxANPP MaxB
> ------
0 FR1 abiebal 0.12 794 23820
0 FR2 abiebal 0.18 786 23580
0 FR3 abiebal 0.32 809 24270
0 FR4 abiebal 0.38 844 25320
0 FR1 acerrub 0.74 651 19530
0 FR2 acerrub 0.68 651 19530
0 FR3 acerrub 0.90 746 22380
0 FR4 acerrub 0.90 791 23730
0 FR1 acersac 0.06 649 19470
0 FR2 acersac 0.12 649 19470
0 FR3 acersac 0.31 745 22350
0 FR4 acersac 0.52 795 23850
0 FR1 betuall 0.03 672 20160
0 FR2 betuall 0.07 671 20130
0 FR3 betuall 0.16 764 22920
0 FR4 betuall 0.28 811 24330
0 FR1 betupap 0.58 586 17580
0 FR2 betupap 0.72 587 17610
0 FR3 betupap 0.80 672 20160
0 FR4 betupap 0.88 716 21480
0 FR1 fraxame 0.07 620 18600
0 FR2 fraxame 0.14 619 18570
0 FR3 fraxame 0.35 700 21000
0 FR4 fraxame 0.60 741 22230
0 FR1 fraxnig 0.04 486 26000
0 FR2 fraxnig 0.20 477 26000
0 FR3 fraxnig 0.18 493 26000
0 FR4 fraxnig 0.40 515 26000
0 FR1 larilar 0.06 649 26000
0 FR2 larilar 0.12 649 26000
0 FR3 larilar 0.31 745 26000
0 FR4 larilar 0.52 795 26000
0 FR1 picegla 0.12 644 19320
0 FR2 picegla 0.24 629 18870
0 FR3 picegla 0.32 650 19500
0 FR4 picegla 0.54 679 20370
0 FR1 picemar 0.04 486 26000
0 FR2 picemar 0.20 477 26000
0 FR3 picemar 0.18 493 26000
0 FR4 picemar 0.40 515 26000
0 FR1 pinuban 0.86 568 17040
0 FR2 pinuban 0.82 574 17220
0 FR3 pinuban 0.96 577 17310
0 FR4 pinuban 0.96 614 18420
0 FR1 pinures 0.04 493 14790
0 FR2 pinures 0.10 498 14940
0 FR3 pinures 0.26 501 15030
0 FR4 pinures 0.48 534 16020
0 FR1 pinustr 0.18 861 25830
0 FR2 pinustr 0.30 865 25950
0 FR3 pinustr 0.30 1019 30570
0 FR4 pinustr 0.40 1089 32670
0 FR1 popugra 0.94 667 20010
0 FR2 popugra 0.90 666 19980
0 FR3 popugra 1.00 758 22740
0 FR4 popugra 0.96 805 24150
0 FR1 poputre 0.88 650 19500
0 FR2 poputre 0.88 650 19500
0 FR3 poputre 0.98 746 22380
0 FR4 poputre 1.00 796 23880
0 FR1 prunser 0.22 639 19170
0 FR2 prunser 0.38 641 19230
0 FR3 prunser 0.36 740 22200
0 FR4 prunser 0.60 794 23820
0 FR1 queralb 0.00 685 20550
0 FR2 queralb 0.00 687 20610
0 FR3 queralb 0.00 784 23520
0 FR4 queralb 0.00 842 25260
0 FR1 querell 0.46 685 20550
0 FR2 querell 0.48 684 20520
0 FR3 querell 0.56 773 23190
0 FR4 querell 0.64 818 24540
0 FR1 querrub 0.10 661 19830
0 FR2 querrub 0.14 661 19830
0 FR3 querrub 0.18 758 22740
0 FR4 querrub 0.40 809 24270
0 FR1 thujocc 0.04 486 14580
0 FR2 thujocc 0.20 477 14310
0 FR3 thujocc 0.18 493 14790
0 FR4 thujocc 0.40 515 15450
0 FR1 tiliame 0.04 741 22230
0 FR2 tiliame 0.08 740 22200
0 FR3 tiliame 0.20 848 25440
0 FR4 tiliame 0.34 901 27030
0 FR1 tsugcan 0.00 616 18480
0 FR2 tsugcan 0.02 609 18270
0 FR3 tsugcan 0.06 627 18810
0 FR4 tsugcan 0.10 645 19350
> END FILE
D. Harvest extension.
LandisData "Biomass Harvest"
Timestep 10
ManagementAreas ..\Oconto_mngt.gis
Stands ..\Oconto_Stand.gis
>======START PRESCRIPTIONS ======
Prescription StandReplacing
StandRanking Random
MinimumAge 11
> Forest Type qualifiers
None
SiteSelection Complete
CohortsRemoved ClearCut
>======
Prescription AspenBirchClearcut
StandRanking MaxCohortAge
MinimumAge 50
> Forest Type qualifiers
ForestTypeTable <deciduous
> InclusionRule ageRange percentOfCells species
>------
Required 50-120 50 betupap popugra poputre
SiteSelection Complete
CohortsRemoved ClearCut
Plant betupap poputre <Ensures persistence of aspen-birch w/o other disturbance
>End prescriptions ************************************************************************
HarvestImplementations
> Mgmt Area Prescription Harvest Area Begin Time End Time
(per timestep)
> ------
1 AspenBirchClearcut 2.5% <80 yr rotation
1 StandReplacing 2.5% <320 yr rotation
>------
> OUTPUT FILES
PrescriptionMaps harvest/prescripts-{timestep}.gis
BiomassMaps harvest/biomass-removed-{timestep}.img
EventLog harvest/log.csv
SummaryLog harvest/SummaryLog.csv
> END FILE
E. Reclass Output extension (Assigns cell to dominant species).
LandisData "Output Biomass Reclass"
Timestep 10
ReclassMaps
> Map Name Forest Type Species
> ------
Dom -> NH acersac betuall querrub prunser fraxame tiliame
Aspen poputre popugra
Birch betupap
Pines pinuban pinures pinustr
Oaks queralb querell
Red_maple acerrub
Hemlock tsugcan
Spruce-fir picegla abiebal
Larch larilar
Cedar thujocc
Wetland picemar fraxnig
MapFileNames output/reclass/{reclass-map-name}-{timestep}.gis
>END FILE
F. Drought Generator extension (determines drought conditions for each time step).
LandisData "Drought Generator"
Timestep 10
> these coefficients generate values of avg drought length (yrs)
Mu 0.3
Sigma 0.7
MapName "drought/DY-{timestep}.gis"
LogFile "drought/droughtgen-log.txt"
> END FILE
G. Drought Disturbance extension.
LandisData "Drought Disturbance"
Timestep 10
MinDroughtYears 1
MaxDroughtYears 5
BackTransformation EXP < NONE, EXP, SQUARE
InterceptCorrection Y < Y,N
SpeciesParameters
> Coefficients based on 5 drought tolerance classes.
> Most tolerant class has no mortality from drought
> These coefficients generate values of biomass lost from avg drought length (yrs)
>Seedling drought sensitivity: 1=insensitive, 2=moderately sensitive, 3=sensitive
> Seedling
> Intcpt Slope Drought
>SppName Y Y_SE B B_SE Sensitivity
>------
abiebal -4.426 0.037 0.235 0.019 2
acerrub -5.668 0.031 0.258 0.016 2
acersac -5.668 0.031 0.258 0.016 2
betuall -4.426 0.037 0.235 0.019 3
betupap -5.499 0.028 0.576 0.015 2
fraxame -5.668 0.031 0.258 0.016 2
fraxnig -5.499 0.028 0.576 0.015 3
larilar -5.668 0.031 0.258 0.016 2
picegla -4.426 0.037 0.235 0.019 2
picemar -5.668 0.031 0.258 0.016 2
pinuban -25.00 0.000 0.000 0.000 2
pinures -25.00 0.000 0.000 0.000 2
pinustr -25.00 0.000 0.000 0.000 2
popugra -5.499 0.028 0.576 0.015 2
poputre -5.499 0.028 0.576 0.015 2
prunser -5.668 0.031 0.258 0.016 2
queralb -25.00 0.000 0.000 0.000 2
querell -25.00 0.000 0.000 0.000 2
querrub -25.00 0.000 0.000 0.000 2
thujocc -4.426 0.037 0.235 0.019 3
tiliame -5.668 0.031 0.258 0.016 2
tsugcan -4.426 0.037 0.235 0.019 3
>------
MapName "drought/droughtbiorem-{timestep}.gis"
LogFile "drought/droughtdist-log.csv"
> END FILE