Supplementary Information Table 1 Orthologous Genes Associated with the Tested Traits

Supplementary Information Table 1 Orthologous genes associated with the tested traits in the B104-2 × Eyou Changjia RIL population identified by in silico mapping between Arabidopsis thaliana and Brassica napus

CI / Gene information in Arabidopsis / Alignment to BE-RIL map (cM)
Chromosome / QTL / from / to / Locus / Gene name / Traits involved
A1 / MnLP-A1 / 69.2 / 81.8 / HMA2 / AT4G30110 / metal transport / 69.72
HMA3 / AT4G30120 / metal transport / 69.74
ZIP9 / AT4G33020 / cation transport / 71.66
PAA1 / AT4G33520 / metal transport / 71.96
AT4G35060 / AT4G35060 / Heavy metal transport / 72.87
AT4G35080 / AT4G35080 / metal ion transport / 72.89
MEE56 / AT4G13380 / metal transport / 80.85
A2 / MnLP-A2b / 76.1 / 102.3 / NRAMP3 / AT2G23150 / metal transport / 90.5
MnLP-A2b / 84.1 / 101.3
A3 / MgLP-A3 / 68.9 / 81.3 / AT3G05920 / AT3G05920 / Heavy metal transport / 69.1
AT3G06130 / AT3G06130 / Heavy metal transport / 69.3
PAP15 / AT3G07130 / acid phosphatase activity / 70.6
AT3G07600 / AT3G07600 / Heavy metal transport / 72.3
AT3G08650 / AT3G08650 / metal ion transport / 74.3
PYK10 / AT3G09260 / response to phosphate starvation / 75.9
IPS1 / AT3G09922 / response to phosphate starvation / 76.2
PAP16 / AT3G10150 / acid phosphatase activity / 76.6
AT3G12100 / AT3G12100 / cation transport / 80.1
A3 / PLP-A3 / 91.5 / 98 / PAP24 / AT4G24890 / acid phosphatase activity / 94.49
PHR1 / AT4G28610 / response to phosphate starvation / 95.00
SQD1 / AT4G33030 / response to phosphate starvation / 95.57
CAT2 / AT4G35090 / response to phosphate starvation / 95.76
SEN1 / AT4G35770 / response to phosphate starvation / 95.79
PLP4 / AT4G37050 / response to phosphate starvation / 95.86
PCK1 / AT4G37870 / response to phosphate starvation / 95.91
A3 / FeLP-A3 / 85.4 / 101.1 / CAX3 / AT3G51860 / cation transport, phosphorus metabolic process / 88.63
A3 / FeLP-A3 / 91.3 / 104.5 / AT3G53530 / AT3G53530 / metal ion transport / 89.91
A3 / CaLP-A3 / 87.0 / 101.8 / AT4G16380 / AT4G16380 / Heavy metal transport / 92.50
A3 / CaLP-A3 / 91.1 / 92.6 / NRAMP5 / AT4G18790 / metal transport / 93.17
A3 / ZnLP-A3 / 94.5 / 95.5 / IRT2 / AT4G19680 / iron transport / 93.37
AT4G23882 / AT4G23882 / Heavy metal transport / 94.28
YSL1 / AT4G24120 / iron / 94.33
HMA2 / AT4G30110 / metal transport / 95.19
HMA3 / AT4G30120 / metal transport / 95.19
ZIP9 / AT4G33020 / cation transport / 95.57
PAA1 / AT4G33520 / metal transport / 95.62
NRAMP5 / AT4G18790 / metal transport / 96.79
IRT2 / AT4G19680 / iron transport / 97.88
AT4G23882 / AT4G23882 / Heavy metal transport / 99.91
YSL1 / AT4G24120 / iron / 100.03
A6 / CaLP-A6 / 28.4 / 31.3 / AT1G22990 / AT1G22990 / Heavy metal transport / 28.5
A6 / CaLP-A6 / 28.5 / 31.3 / LPR1 / AT1G23010 / response to phosphate starvation / 28.5
AT1G29000 / AT1G29000 / Heavy metal transport / 28.7
MIR399A / AT1G29265 / response to phosphate starvation / 28.7
AT1G29820 / AT1G29820 / metal transport / 28.7
CCC1 / AT1G30450 / cation transport / 28.7
PHT3;2 / AT3G48850 / phosphate transport / 29.2
AT3G48970 / AT3G48970 / Heavy metal transport / 29.2
A6 / ZnLP-A6 / 30.3 / 34.5 / ZIP12 / AT5G62160 / zinc transport / 31.9
MIR399C / AT5G62162 / response to phosphate starvation / 31.9
PAP29 / AT5G63140 / acid phosphatase activity / 32.5
AT5G66110 / AT5G66110 / Heavy metal transport / 34.2
A7 / FeNP-A7a / 36.1 / 45.2 / AT3G48970 / AT3G48970 / Heavy metal transport / 43.5
A7 / PLP-A7 / 78.6 / 85.9 / PS2 / AT1G73010 / response to phosphate starvation / 79.5
A7 / PLP-A7 / 78.4 / 90.5 / LPR2 / AT1G71040 / response to phosphate starvation / 81.1
PHO1;H1 / AT1G68740 / phosphate transport / 83.6
MYB62 / AT1G68320 / response to phosphate starvation / 85.0
NAP3 / AT1G67940 / phosphate transport / 85.5
BGLU21 / AT1G66270 / response to phosphate starvation / 86.7
BGLU21 / AT1G66270 / response to phosphate starvation / 90.5
A7 / FeNP-A7b / 94.5 / 99.8 / AT1G76800 / AT1G76800 / iron transport / 94.9
AT1G79520 / AT1G79520 / cation transport / 96.4
A8 / FeNP-A8 / 0 / 4.2 / AT1G51610 / AT1G51610 / cation transport / 0.1
CCX4 / AT1G54115 / cation transport / 0.9
CAX6 / AT1G55720 / cation transport / 1.4
CAX5 / AT1G55730 / cation transport / 1.4
AT1G55790 / AT1G55790 / metal ion transport / 1.4
A8 / CuLP-A8 / 31.4 / 41.8 / HMA2 / AT4G30110 / metal transport / 31.7
HMA3 / AT4G30120 / metal transport / 31.7
ZIP9 / AT4G33020 / cation transport / 33.2
PAA1 / AT4G33520 / metal transport / 33.4
AT4G35060 / AT4G35060 / Heavy metal transport / 34.1
AT4G35080 / AT4G35080 / metal ion transport / 34.1
CAT2 / AT4G35090 / response to phosphate starvation / 34.1
PAP25 / AT4G36350 / acid phosphatase activity / 34.7
HMA1 / AT4G37270 / copper transport / 37.3
PCK1 / AT4G37870 / response to phosphate starvation / 39.7
A8 / ZnLP-A8 / 43 / 50.8 / ATX1 / AT1G66240 / metal ion transport / 45.0
NAP3 / AT1G67940 / phosphate transport / 46.2
IAR1 / AT1G68100 / metal transport / 46.3
MYB62 / AT1G68320 / response to phosphate starvation / 46.4
PHO1;H1 / AT1G68740 / phosphate transport / 46.8
A10 / PNP-A10 / 29.1 / 34.5 / MIR399C / AT5G62162 / response to phosphate starvation / 28.76
PAP29 / AT5G63140 / acid phosphatase activity / 29.34
A10 / MgNP-A10 / 29.4 / 34.0 / ZIP12 / AT5G62160 / zinc transport / 28.75
A10 / MgNP-A10 / 29.9 / 35.7 / AT3G53530 / AT3G53530 / metal ion transport / 35.07
A10 / FeNP-A10a / 29.9 / 35.7 / AT1G22990 / AT1G22990 / Heavy metal transport / 38.04
A10 / MnNP-A10a / 29.4 / 39.4 / AT1G23000 / AT1G23000 / Heavy metal transport / 38.05
A10 / ZnNP-A10 / 28.6 / 39.6 / PAA2 / AT5G21930 / copper transport / 41.16
A10 / CuLP-A10 / 34.5 / 40.2 / COPT5 / AT5G20650 / copper transport / 41.57
A10 / CuNP-A10 / 28.8 / 40.3
A10 / CuNP-A10 / 29.9 / 41.7
A10 / MnNP-A10a / 29.3 / 41.9
A10 / ZnNP-A10 / 29.8 / 41.9
A10 / MnLP-A10 / 52.0 / 68.5 / AT5G14910 / AT5G14910 / Heavy metal transport / 54.35
A10 / CaNP-A10 / 57.2 / 63.7 / AT5G09720 / AT5G09720 / metal transport / 59.49
A10 / CaNP-A10 / 57.2 / 64.9 / AT5G09710 / AT5G09710 / metal transport / 59.49
A10 / FeNP-A10b / 57.3 / 64.9 / AT5G05365 / AT5G05365 / Heavy metal transport / 59.78
A10 / MnNP-A10b / 61.9 / 64.0 / AT5G03380 / AT5G03380 / Heavy metal transport / 59.94
AT5G02600 / AT5G02600 / Heavy metal transport / 59.99
A10 / PLP-A10 / 62.5 / 64.8 / PHT3;1 / AT5G14040 / phosphate transport / 59.18
A10 / PLP-A10 / 57.5 / 65.2 / WRKY75 / AT5G13080 / response to phosphate starvation, lateral root development / 59.26
ZAT6 / AT5G04340 / response to phosphate starvation / 59.86
AT4 / AT5G03545 / response to phosphate starvation / 62.26
ZAT6 / AT5G04340 / response to phosphate starvation / 63.78
C1 / MgLP-C1 / 0 / 4.5 / PLP4 / AT4G37050 / response to phosphate starvation / 3.5
C1 / CuLP-C1 / 77.8 / 87.2 / YSL5 / AT3G17650 / metal-nicotianamine transport / 81.20
CRSH / AT3G17470 / guanosine tetraphosphate metabolic process / 81.49
MT3 / AT3G15353 / copper homeostasis / 85.88
C2 / CaLP-C2 / 0.0 / 18.2 / AT5G60800 / AT5G60800 / Heavy metal transport / 10.09
C3 / MgLP-C3 / 27 / 29.4 / SPX1 / AT5G20150 / response to phosphate starvation / 28.0
PHT4;5 / AT5G20380 / phosphate transport / 28.7
MGD2 / AT5G20410 / response to phosphate starvation / 28.7
C4 / CaNP-C4 / 57.6 / 61.8 / AT3G12100 / AT3G12100 / cation transport / 59.9
AT3G07600 / AT3G07600 / Heavy metal transport / 57.7
AT3G08650 / AT3G08650 / metal ion transport / 58.0
C6 / MnNP-C6 / 0.0 / 5.8 / NRAMP3 / AT2G23150 / metal transport / 5.71
C6 / FeNP-C6 / 6.0 / 9.7 / AT1G79520 / AT1G79520 / cation transport / 9.68
C6 / CaNP-C6 / 9.7 / 12.3 / AT1G76800 / AT1G76800 / iron transport / 12.41
C6 / CuNP-C6 / 5.7 / 13.2 / AT1G71050 / AT1G71050 / Heavy metal transport / 15.83
C6 / CuNP-C6 / 1.2 / 13.4 / IAR1 / AT1G68100 / metal transport / 17.20
C6 / CuLP-C6 / 3.5 / 13.5 / ATX1 / AT1G66240 / metal ion transport / 17.98
C6 / ZnNP-C6 / 11.9 / 13.5 / YSL7 / AT1G65730 / metal-nicotianamine transport / 18.21
C6 / CuLP-C6 / 9.8 / 17.8 / ATX1 / AT1G66240 / metal ion transport / 18.95
C6 / FeNP-C6 / 8.0 / 19.8 / IAR1 / AT1G68100 / metal transport / 19.81
C6 / CaNP-C6 / 11.2 / 19.9 / AT1G71050 / AT1G71050 / Heavy metal transport / 20.57
C6 / PNP-C6 / 13.5 / 22.1 / SOL1 / AT1G71696 / regulation of root meristem growth / 20.67
C6 / ZnNP-C6 / 12.0 / 23.9 / AT1G76800 / AT1G76800 / iron transport / 23.42
C6 / MgNP-C6 / 13.5 / 30.7 / AT1G79520 / AT1G79520 / cation transport / 25.15
C6 / PNP-C6 / 14.1 / 30.7
C6 / MgNP-C6 / 18.6 / 31.2
C7 / PLP-C7 / 34.2 / 43.4 / PHT1;6 / AT5G43340 / phosphate transport / 40.2
PHT1;1 / AT5G43350 / phosphate transport / 40.2
PHT1;3 / AT5G43360 / phosphate transport / 42.1
PHT1;2 / AT5G43370 / phosphate transport / 43.4
C7 / ZnLP-C7 / 58.3 / 73.7 / AT2G36950 / AT2G36950 / Heavy metal transport / 71.1
C7 / ZnLP-C7 / 65 / 79.7 / AT2G37390 / AT2G37390 / metal ion transport / 71.2
PHT4;2 / AT2G38060 / phosphate transport / 71.4
PHT1;4 / AT2G38940 / phosphate transport / 73.3
PAP27 / AT5G50400 / acid phosphatase activity / 78.4
AT5G50740 / AT5G50740 / Heavy metal transport / 78.6
C8 / MgLP-C8a / 0 / 10.7 / TPS12 / AT4G13280 / farnesyl diphosphate metabolic process / 0.3
C8 / CaLP-C8 / 0 / 12.2 / MEE56 / AT4G13380 / metal transport / 0.3
C8 / FeLP-C8 / 0 / 12.8 / PAP23 / AT4G13700 / acid phosphatase activity / 0.6
C9 / PLP-C9 / 62.9 / 73.8 / PHT4;6 / AT5G44370 / phosphate transport / 64.64
PHT1;2 / AT5G43370 / phosphate transport / 65.38
PHT1;3 / AT5G43360 / phosphate transport / 66.43
PHT1;1 / AT5G43350 / phosphate transport / 66.45
PHT1;6 / AT5G43340 / phosphate transport / 66.46
TPT / AT5G46110 / phosphate transport / 71.40
PHT3;1 / AT5G14040 / phosphate transport / 73.79
PHR1 / AT4G28610 / response to phosphate starvation / 67.82
AT4 / AT5G03545 / response to phosphate starvation / 72.29
ZAT6 / AT5G04340 / response to phosphate starvation / 72.45
WRKY75 / AT5G13080 / response to phosphate starvation, lateral root development / 73.63