Tree topology / All / 8 / 7+8 / 6,7+8
1) Breviata sister to Amoebozoa / 0.740 / 0.733 / 0.644 / 0.183
2) Breviata as sister to M. balamuthi and E. histolytica / 0.477 / 0.272 / 0.534 / 0.926
3) Breviata as sister to D. discoideum and P. polycephalum / 2e-33 / 9e-98 / 0.006 / 0.013
4) Breviata as sister to A. castellani and H. veriformis / 0.001 / 2e-39 / 2e-4 / 0.008
5) Breviata as sister to opisthokonts / 0.046 / 0.017 / 0.070 / 0.097
6) Breviata as sister to excavates / 0.060 / 0.001 / 0.002 / 0.004
7) Breviata as sister to E. gracilis, S. marylandensis, R. americana and “S. ecuadoriensis” / 0.060 / 0.001 / 0.002 / 0.004
8) Breviata as sister to R. americana and “S. ecuadoriensis” / 3e-4 / 2e-4 / 1e-4 / 2e-4
9) Breviata as sister to E. gracilis and S. marylandensis / 0.001 / 0.002 / 4e-30 / 2e-4
10) Breviata as sister to plants, haptophytes and cryptophytes / 1e-53 / 5e-7 / 0.002 / 0.008
11) Breviata as sister to cryptophytes and haptophytes / 7e-5 / 5e-5 / 0.002 / 0.001
12) Breviata as sister to red algae and viridiplantae / 0.001 / 1e-6 / 0.004 / 0.002
13) Breviata as sister to Glaucophyta / 3e-4 / 0.001 / 0.005 / 0.006
14) Breviata as sister to stramenopiles, alveolates and Rhizaria / 1e-5 / 4e-4 / 7e-8 / 0.008
15) Breviata as sister to Rhizaria / 2e-7 / 0.007 / 2e-4 / 1e-15
16) Breviata as sister to stramenopiles and alveolates / 1e-37 / 1e-30 / 3e-26 / 0.001
17) Breviata as sister to stramenopiles / 9e-7 / 2e-63 / 0.001 / 2e-6
18) Breviata as sister to alveolates / 2e-21 / 3e-58 / 7e-11 / 6e-14

Topologies tested:

1) (((((AC,HV),((DD,PP),(EH,MB))),Breviata),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

2)

((((AC,HV),((DD,PP),((EH,MB),Breviata))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

3)

((((AC,HV),(((DD,PP),Breviata),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

4)

(((((AC,HV),Breviata),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

5)

((((AC,HV),((DD,PP),(EH,MB))),((((CO,MO),(DM,HS)),((CN,NC),MV)),Breviata)),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

6)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),((((EG,SM),(RA,SE)),Breviata),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

7)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),((((EG,SM),(RA,SE)),Breviata),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

8)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),((RA,SE),Breviata)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

9)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),((((EG,SM),Breviata),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

10)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),((((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL)))),Breviata)))

11)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),((GT,(IG,PL)),Breviata)))))

12)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),((((ATh,CR),(CM,PY)),Breviata),((CPa,GN),(GT,(IG,PL))))))

13)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),(((CPa,GN),Breviata),(GT,(IG,PL))))))

14)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),(((((((AT,KM),(CP,TG)),TT),(PT,PS)),(BN,RF)),Breviata),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

15)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),(PT,PS)),((BN,RF),Breviata)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

16)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),(((((((AT,KM),(CP,TG)),TT),(PT,PS)),Breviata),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

17)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),((((((AT,KM),(CP,TG)),TT),((PT,PS),Breviata)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

18)

((((AC,HV),((DD,PP),(EH,MB))),(((CO,MO),(DM,HS)),((CN,NC),MV))),(((EG,SM),(RA,SE)),MJ),(((((((AT,KM),(CP,TG)),TT),Breviata),(PT,PS)),(BN,RF)),(((ATh,CR),(CM,PY)),((CPa,GN),(GT,(IG,PL))))))

Abbreviations:

AC, Acanthamoeba castellani; HV, Hartmannella vermiformis; DD, Dictyostelium discoideum; PP, Physarum polycephalum; EH, Entamoeba histolytica; MB, Mastigamoeba balamuthi; CO, Capsaspora owczarzaki; MO, Monosiga ovata; DM, Drosophila melanogaster; HS, Homo sapiens; CN, Cryptococcus neoformans; NC, Neurospora crassa; MV, Mortierella verticillata; EG, Euglena gracilis; SM, Sawyeria marylandensis; RA, Reclinomonas americana; SE, Seculamonas ecuadoriensis; MJ, Malawimonas jakobiformis; AT, Alexandrium tamarense; KM, Karlodinium micrum; CP, Cryptosporidium parvum; TG, Toxoplasma gondii; TT, Tetrahymena thermophila; PT, Phaeodactylum tricornutum; PS, Phytophthora sojae; BN, Bigelowiella natans; RF, Reticulomyxa filosa; ATh, Arabidopsis thaliana; CR; Chlamydomonas reinhardtii; CM, Cyanidioschyzon merolae; PY, Porphyra yezoensis; CPa, Cyanophora paradoxa; GN, Glaucocystis nostochinearum; GT, Guillardia theta; IG, Isochrysis galbana; PL; Pavlova lutheri