Supplementary Tables
Table S1: GenBank accession numbers of genomes used to create phylogeny shown in Figure 1.
Table S2: Identifiers for the protein sequences used to build tree in Figure S2. These protein sequences form a family as determined by OrthoMCL.
Table S3: Identifiers for the protein sequences used to build tree in Figure S3. These protein sequences form a family as determined by OrthoMCL.
Table S4: Identifiers for the protein sequences used to build tree in Figure S4. These protein sequences are the 10 best BLAST hits of Avin19880.
Table S5: Identifiers for the protein sequences used to build tree in Figure S5. These protein sequences are the 10 best BLAST hits of Avin19890.
Table S6: Genes related with PHB metabolism in the A. vinelandii genome.
Supplementary figures
Figure S1: Whole chromosome alignment of A. vinelandii DJ and P. stutzeri A1501. Alignment obtained with MUMmer.
Figure S2: Phylogenetic tree of CydAB oxidase I, cydA. Branch numbers are confidence values as given by MrBayes. Size bar: number of amino acid substitutions per site.
Figure S3: Phylogenetic tree of CydAB oxidase I, cydB. Branch numbers are confidence values as given by MrBayes. Size bar: number of amino acid substitutions per site.
Figure S4: Phylogenetic tree of CydAB oxidase II, cydA. Branch numbers are confidence values as given by MrBayes. Size bar: number of amino acid substitutions per site.
Figure S5: Phylogenetic tree of CydAB oxidase II, cydB. Branch numbers are confidence values as given by MrBayes. Size bar: number of amino acid substitutions per site.
Figure S6: Phylogenetic tree of nif, vnf, and anf genes from A. vinelandii and four orthologs from P. stutzeri A1501. Branch numbers are confidence values as given by MrBayes. Size bar: number of amino acid substitutions per site.
Figure S7: Gene neighborhood of the alginate operon.