Notes:
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The general structure of these sequences is Target DNA - extranucs (if any) - L1 cDNA.
ks500= Bluescript KS- origin of replication (L1 target DNA).
Microhomology often exists between the L1 polyT tail and the T rich target sequence (and occasionally between internally initiated L1 cDNA and the target). For the purpose of this supplementary data, this has ambiguous sequence has been assigned to the L1 cDNA.
Non-templated nucleotides are typically separated from the target and L1 cDNA by spaces. In several instances (RNAs #2: 28, 35; #4: 19/T7, 28Bq, 25Bq; and #7: 4, 15), other segments of KS- DNA are found between the target DNA and L1 cDNA. These clones were not excluded from the analysis, but may be the product of an abberant mechanism.
For clarity, the internal polyT heterogeneity with L1 cDNA #4 is not shown in Figure #4c.
The data set is non-redundant. This may have resulted in the exclusion of a few identical yet independent insertions.
Wild-type L1 ORF2, L1 RNA #1
ks500 TGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTT
3/T7 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTT
32•14/T7 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTT
ks500 ACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAG
3/T7 ACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
32•14/T7 ACTCATATATACTTTAGATTGAT:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ks500 ATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAG
3/T7 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATA
32•14/T7 .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::GCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTAT
L1 3' end ACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTAT
ks500 AGCGCAGATACCAAATACTGTCCTTCTAGTGTAGC
3/T7 TCTCCCAATG:CTATCCCTCCCCAAGGGCGAATTC
32•14/T7 ATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
L1 3' end ATCTCCCAATGCTATCCCTCCCC
Wild-type L1 ORF2, L1 RNA #2
ks500 TGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATAT
27 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATAT
25 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATAT
26 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATAT
36 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATAT
29 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
28 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAG:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
35 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
33 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ks500 ACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGA
27 ACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAGTCTCATGACCAAAGTCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCT::ACATGT
25 ACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTT:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACATGT
26 ACTTTAGATTGATTTAAAACTTCAT:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACATGT
36 ACTT::::G:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACATGT
29 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACATGT
28 :::::::::::::::::::::::::GAAGGGCCGAACACAGAAGTGGTCCTGCAACTTTATCCGCCTCCATCCAGTCTATTAATTGTTGCCGGGAAGCTAAAGTAAGTAGTTCGCCCAACCCA:::::::::::::::::::::ACATGT
35 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::GAGTAAGTAGTTCGCCAGTTAATACGTTTGCGCAACGTTGTTGCCATTGCTACAGGCATCGCCCG:::::::::::::ACATGT
33 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACATGT
L1 3' .ACATGT
ks500 TCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAG
27 GCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCGCCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
25 GCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
26 GCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
36 GCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTGATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTA CCCTCCCCAA GGGCGAATTC
29 GCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
28 GCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
35 GCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTAT CCTCCCCAA GGGCGAATTC
33 GCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
L1 3' .GCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCC
Wild-type L1 ORF2, L1 RNA #3
ks 5 TGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
102 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
QF5 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
QF6 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
17 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
119/T7 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
87 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACNACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
QF7 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACNACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
QF1 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACNACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
QF4 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACNACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
85 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATCGGTAACTGTCA
86 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAGCGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAAATGTCA
106 GAATTNGCCCTTTGGTAAGCCCTCCCGNNTTGTAGTTATTTANANGACGGGGNGTNAGGCAANTATGGATGNACGAAATAGACAGATTGNTGAGATAGGTGCCTNACTGATTAAGCATTGGTAACTGTCA
61 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
108 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
64 GAATTCGCCCTTTGGTAAGCCCTCCCGTATTGTAGTTATTTANACGACGGGGAGTCAGGCAANTATGGGTGAACGAAATAGACAGATNGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
116/T73 GAATTCGCCCTTTGGTAAGCCCTCCCGTATNGTAGTTATNTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACCGATTAAGCATTGGTAACTGTCA
QF2 GAATTCGCCCTTTGGTAAGCCCTCCCGTATNGTAGTTATNTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACCGATTAAGCATTGGTAACTGTCA
28•7/T7 ACCTGCCNNNANGCAAGCTCNACCNTNTTNTAGTGTCATACTAAACGGGNAGTCNGGCANCTATGGATGAACGAANTCTNCNGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
80 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA
94 AAATNCGCCCTTTGGTAANCCCNCCCGTATCGTATTTATCTACACNANGGGGANTCNGGCAACTATGGATGAACNAAATAAACANATCGCTGAAATNGGTGCCNCACTGATTAANCATNGGTAACTGTCA
115 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATACACAGATCGCTGAGATAGGCGCCTCACTGATTAAGCATTGGTAACTGTCA
101 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATACACAGATCGCTGAGATAGGCGCCTCACTGATTAAGCATTGGTAACTGTCA
QF3 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAANTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCANTGGTAACTGTCA
111 GAATTCGCCCTTTGGTAAGCCCTCCCGTATNGTAGTTATNTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTG:::
109 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCA:::::::::::::
65 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTNTGGATGAACGAAATAGACAGATNGCTGAGATAGGTGCCTCACTGATTAA::::::::::::::::
24 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAG::::::::::::::::::::::::::::::::
55 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATA:::::::::::::::::::::::::::::::::
114 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCANGCAACTATGGATGAAC::::::::::::::::::::::::::::::::::::::::::::::::::::::::
20 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGGTGAA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
84 NAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGAT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
118/T72 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTANTTATCTACACGACGGGGAGTCAGGCAACTATG:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
113 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAAC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
69 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
14 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGAC::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
112 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGAC::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ks GACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAG
102 AACCAAGTTTACTCATATATACTTTANATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAANATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAG
QF5 AACCAAGTTTACTCATATATACTTTANATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAANATCC::::::::::::::::::::::::::::::::::::::::::::::::::::::
QF6 GACCAAGTTTACTCATATATACTTTAGATTGATTTAAGACTTCATTTTTAATTTA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
17 GACCAAGTTTACTCATATATACTTTAGATTGATTTAAGACTTCATTTTTAA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
119/T7 GACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
87 NACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
QF7 NACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
QF1 NACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
QF4 NACCAAGTTTACTCATATATACTTTAGATTGATTTAAAAC:::::::::::::::::::::::::::::::::::::::::::::::::::AAATG::::::::::::::::::::::::::::::::::
85 GACCAAGTTTACTCATATATACTTTAGATTGATT::::::::::::::::::::::::::ATTTTCGTTTTGTTATTGCAGATTACTTTATTAATAAGGCGCCTAAAGTCCTTTATCTGGATGCAGATAT
86 GACCAAGTTTACTCATATATACTTTAGATTGAT:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AGAG::::
106 GGCCAAGTTTAATNATATATAATTTAGNTTGA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
61 GACCAAGTTTACTCATATATACTTTAGATTGA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
108 GACCAAGTTTACTCATATATACTTTAGATTGA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
64 GACCAAGTTTAATNATATATANTTTAGA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
116/T73 GACCAAGTTTACTCATATATACTTTA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
QF2 GACCAAGTTTACTCATATATACTTTA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
28•7/T7 GACCAAGTTTACTCATATATACTT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
80 GACCAAGTTTA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
94 AACCAAGTTNA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
115 GACCAAG:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
101 GACCAAG:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
QF3 GACCAA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAG:::::::::::::::::::::::::::::::::::
111 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
109 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
65 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
24 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
55 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AACAATTATGAAACTGATAAGTTTTGTGAGCAATTTTAACAAAATAATGTACTTATTGTTACAAATAAAA
114 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
20 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTTTA:::::::::::::::
84 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
118/T72 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
113 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
69 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
14 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
112 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TAAAAA::::::::::::::::::::::::::::::::::::::
ks CGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAAC
102 CGTCAGACCCCGTANAAAAGATCAAAGGATCTTCTTGAGATCC::::TTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
QF5 ::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
QF6 :::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
17 :::::::::::::::::::::::::::::::::::::::: ::::::::TTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
119/T7 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
87 ::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
QF7 :::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
QF1 :::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
QF4 :::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
85 CA::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACNCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
86 :::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
106 :::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
61 :::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
108 ::::::::::::::::::::::::::::::::::::TTTTTTTTTTNTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
64 :::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
116/T73 :::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
QF2 :::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
28•7/T7 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
80 :::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
94 :::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATNACACNCTAGTTTTNGGGTACATNTNCNCATTGTGCNGGTTANTTACATNTNTATACNTNTNCCATGC
115 ::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTCTTTNATNATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
101 ::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTATACTGTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
QF3 ::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
111 ::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
109 ::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
65 :::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
24 ::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
55 CG::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
114 ::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
20 :::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
84 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::GTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
118/T72 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::CTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
113 :::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
69 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
14 ::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACACGTGCCATGC
112 :::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
L1.3 3' end TTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGC
102 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCTAGGGCGAATTC
QF5 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCTAGGGCGAATTC
QF6 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCTAGGGCGAATTC
17 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
119/T7 TGGTGCGCTGCACCCACTAATGTGTCGTCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
87 TGGTGCGCTGCACCCACTAATGTGTCATCTANCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
QF7 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCTAGGGCGAATTC
QF1 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCTAGGGCGAATTC
QF4 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCTAGGGCGAATTC
85 TGGTGCGCTGCACCCACNAATGTGTCATCTACCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
86 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
106 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
61 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
108 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
64 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGNTATCCCTCCCCAAGGGCGAATTC
116/T73 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
QF2 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
28•7/T7 TGGNGCGCTGCACCCACTAATGTGTNATCTAGCATTAGGTATATCTNCCAATGCTATCCCTCCCCAAGGGCGAATTC
80 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
94 NGGTGCNCNNCCCCCACTANTNTNTCNTCTACCATTNGGTATNTCNCCCAATGCTNNCCCNCCCCNGGGGCNAATNC
115 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
101 TGGTGCGCTGCACCCAGTAATGTGTNATCTAGCNTTAGGTATATCTCCCAATGATATCCCTCCCCAAGGGCGAATTN
QF3 TGGTGCGCTGCACCCAGTAATGTGTNATCTAGCNTTAGGTATATCTCCCAATGATATCCCTCCCCAAGGGCGAATTN
111 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
109 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
65 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
24 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
55 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
114 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
20 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
84 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
118/T72 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
113 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
69 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
14 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
112 TGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
EN Mutant ORF2, L1 RNA #3
ks 500 from 2084 TGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
17/M13-F* GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
16/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
6/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
19/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
52 GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTANTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATANATACATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAAACCAAGTTTA
44 GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTATTTATCTACACGACGGGGANTCAGGCAACTATGGATGAACGAAATACATAGATCGCTGAGATAGGTGCCTCNCTGATTAANCATTGGTAACTGTCANACCAANTTTA
53 AACGGAANGGGGGGGAGTCAAGGGCCAAACTAATGGGATGGAACGGAAAATANGAACAGAATGCGGCTGGAAGATAAGGTGCCTCCAACTGATTAAAGNCATTGGGTAAACNNGTCAGACCAAAGTGTTAACTTCAATNN
79/M13-F.1 TGGTAAGCCCTCCCGGATTGGAGTTATTTAAAAGACGGGGNGTNAGGCAAATATGGNTGNANGAAATAGANAGATTGNTGAGATAGGNGCCTNANTGATTAAGNATTGGNAAATGTNAGACCAAGNTTA
7/M13-F GAATTCGGNTTTGGTAAGCCCTCCCGTNTGGAGNTNTTTAANANGAAGGGGNGTNAGGCAANTATGGGTGNACGAAATAGANAGATNGNTGAGATAGGNGCCTCANTGATTAAGNATTGGNAANTGTNAGNCCAAGNTTA
36/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
37/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
67/M13-F.1 GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
2/M13-F* GAATTGGGTTTGGNAANCCCCCCCGTTTNGGAGTTATNAAAAAGGGGGGGGGGNGAGGCAANTTTGGGTGNANGAAANANANAGATNGGTGNGANAGGNGCCTCANTGATTAAGNATTGGTAACTGTCAGACCAAGTTTA
21/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
35/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
56/M13-R GAATTCGGCTTTGGTAANCCCTCCCGTATCGTATTTATCTACACGACGGGGAGTCAGGCAACTATGGATNAACNAAATAAACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAAACCAATTTTA
66 GAATTNGGNTTTGGTAAGCCCTCCCGTATNGTAGTTATNTACANGACGGGGAGTCAGGCAANTATGGNTGAANGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
10/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
83/M13-F.1 GAATTCNGGCANNTATGNATAANCAAAATAAACAANTCNCTAAAATNGGTNCCNCNCNNATNAACCNTNGGTANNNGTCAAACCAAGTTTA
50 NAATTCGGCTTTGGTAAGCCCTCCCGTATCGTATTTATCTACACNACGGGGAGTCAGGCAACTATGGATGAACAAAATAAACAGATCGCTGAAATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAAACCAATTTTA
49 CCGTATCGTAGTGGTAAGCCCTCCCGTATNGTAGTTATNTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
39/M13-F* GAATTCGGNTTTGGTAANCCCTCCCGNATTGNAGTTATTTANANGANGGGGNGTNAGGNAANTNTGGNTGNACGNAATANANAGATTGNTGAGNTAGGNGCCTCANTGATTAAGCATTGGNAANTGTNAGACCAAGNTTA
15/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
28/M13-F* GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
84 M13 F+R GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA
29/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGAC::::::::
9/M13-F* GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACT:::::::::::::::
48 GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTCATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATANACAGATCGCTGAGATAGGTGCCTCACTGATTAAG::::::::::::::::::::::::::
38/M13-F GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGG::::::::::::::::::::::::::::::::::::::::::
77/M13-F.1 GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTANTTATCTACACNACGGGGANTCAGGCAACTATGGATGAAC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
42 GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAAC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
46 NAATTCGGCTTTGGTAAGCCCTCCCGTATCGTANTTATCTACACAACGGGGAG:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
76 M13 F+R GAATTCGGCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAG:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
57/M13-F.1 AAAATNCGGNTTGGTAACCCCNCCCNTATCNTATTTATCTACNCAACGGGGA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ks 500 from 2084 CTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGA
23/M13-F* AAAATTTTTTTTTNATTTNAAAGGATTTNGGGGGANAACCNTTTTGGNAATTTTANGNCCCAAATNCCCTAAAGTGAGTTTTTTTTCCANTGGGGGTCNNACCCCNGNGNAAAAA
17/M13-F* CTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTNCCACTGAGCGTC:::::::::::::::::
16/M13-F CTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGC::::::::::::::::::::
6/M13-F CTNATATATACTTTAGATTGATTTAAAANTTCATTTTTAATTTAAAAGGATNTAGGTGAAGATCCTTTTTGATAATTTCATGACCAAAATCCCTTAANGTGAGTTTT:::::::::::::::::::::::::::::::::
19/M13-F CTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAG:::::::::::::::::::::::::::::::::::::
52 CTCNTATATNCTTTANATTGATTTAAAACTTCNTTTTTAATTTAAAAGGATCTAGGTGAAAATCCTTTTTGATAATCTCATGACCAA:::::::::::::::::::::::::::::::::::::::::::::::::::::
44 CTCATATATACTTTANATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAANATCCTTTTTGATAATCNCATGACCA::::::::::::::::::::::::::::::::::::::::::::::::::::::
53 TATAACTTTTTNAGATTGGATTTAAAANTTCGATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGNTAATCTCAT:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
79/M13-F.1 ATTANANATAATTTAGNTTGNTTTAAAAATTNATTTTTAATTTAAAAGGATTTAGGNGNAGATCCTTTTTGNTAAT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
7/M13-F ATTANATGTAATTTAGNTTGNTTTAAAAATTNATTTTTAATTTAAAAGGATTTAGGGGNAGATCCTTTTTGATAA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
36/M13-F CTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
37/M13-F CTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTT:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
67/M13-F.1 CTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAANATCC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
2/M13-F* ATTANAAANAATNNNGNNNGNTTTAAAAATTCATTT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
21/M13-F CTCATATATACTTTAGATTGATTTAAAACTTCA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
35/M13-F CTCATATATACTTTAGATTGATTTAAAANTTCA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
56/M13-R CTCATATATACTTTAAATTGATTTAAAACTTCA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
66 NTCATATATANTTTAGATTGATTTAAAANTTC::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
10/M13-F CTCATATATACTTTAGATTGATTTAAAAC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
83/M13-F.1 CNCATNTNTNCTTNAAATTGAT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
50 CTCATATATACTTTAAATTGA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
49 CTC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
39/M13-F* CTC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
15/M13-F CT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
28/M13-F* CT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
84 M13 F+R C:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
29/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
9/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
48 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
38/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
77/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
42 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
46 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
76 M13 F+R ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
57/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
L1.3 3' end :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ks 500 from 2084 TCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGA
23/M13-F* TCAAA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
17/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
16/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
6/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
19/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
52 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
44 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
53 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
79/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
7/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
36/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
37/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
67/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
2/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
21/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
35/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
56/M13-R ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
66 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
10/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
83/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
50 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
49 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
39/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
15/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
28/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
84 M13 F+R ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
29/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
9/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
48 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
38/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
77/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
42 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
46 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
76 M13 F+R ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
57/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
L1.3 3' end ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ks 500 from 2084 GCGCAGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGC
34/M13-F GAATTCGGCTTATACTGTTCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTAC
23/M13-F* :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTT
17/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
16/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
6/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
19/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
52 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
44 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
53 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
79/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
7/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
36/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
37/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
67/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
2/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
21/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
35/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
56/M13-R ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
66 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
10/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
83/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
50 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
49 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
39/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
15/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
28/M13-F* ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAAAAA
84 M13 F+R :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TAAAAAA
29/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
9/M13-F* :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAAAAAAAAAAAAAAAAAAAAAANCTTTTTTTTTTTTTTTTTTTTTTTNCTTTTTTTTTTTTT
48 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
38/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
77/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
42 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
46 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTT
76 M13 F+R ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TATTTTTTTTTTTTTTTTTTTTTT
57/M13-F.1 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTT
L1.3 3' end ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
34/M13-F CGGGTTGGACTCAAGACNATAGTTACCGGATAAGGCGGACAGTTACCAATGCTTAATCAGTG:TTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTANATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
23/M13-F* TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTATACTCTAAGTTTTAGGGTACATGTGCACACTGTGCAGGTTAGTTACATATGTATAC
17/M13-F* :::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNANAANACTCNANNTTTTAGGGTTNATGTTTCCATTGTGCAGGTNGGNTTACATATNTTTN
16/M13-F ::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAATNATACTCTAANTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATNTATAC
6/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAACTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
19/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
52 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAGTTTTAGGGTTANATGTGCACATTNGTTGGCANNGGTTANTTCACATC
44 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAGTTTTAGGGTGACATGTTGCCACNTTGGTGCCAGGTTTAGNTTNANCA
53 :::::::::::::::::::::::::::::::::::::::::::::::::::::::ACAATTGAACGTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
79/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTAAGTTTTAGGGNAAANGTGCANATTGTGCAGGTTAGNTANANANGTANAA
7/M13-F :::::::::::::::::::::::::TTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
36/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
37/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
67/M13-F.1 :TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTATNNAAAAAANCCCNAATTTTTAGGGTTCNTNTTTCCATTGTGCAGGTTNGTTACATATNTTTAC
2/M13-F* :::::::::::::::::::::::::::AAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNAATAANACTCTAAGTTTTAGGGAACATGTGCACATTGTGCAGGTTAGTNACATATGTANAC
21/M13-F :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTANTTACATATGTATAC
35/M13-F :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
56/M13-R :::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATNANNCNCTAATTTTTNGGGTNCNTNTNCNCNTTGNGCNGGTTATTTACATNTTTTTAC
66 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ATTATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
10/M13-F :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTANTTACATATGTATAC
83/M13-F.1 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTACNTNTTTTTNC
50 ::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTANNATACNCNAATTTTAGGGTNNTNTNCNCCATTGTGCAGGTTTANATTACATTAATNC
49 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
39/M13-F* ::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
15/M13-F :::::::::::::::::::::::::::::::::::::::::::::::::::::::::GAAGGCAATCTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
28/M13-F* AAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTANAAANCNCNAATTTTTNGGGTNNNTTTTCCCNTTNTGCGGGTTATTTNCATNTTTTTAC
84 M13 F+R AAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTANTANANTTTAAGTTTTAGGGTANATGTGCANATTGTGCAGGTTAGTTANATATGTATAN
29/M13-F ::::::::::::::::::::::::::::::::::::::::::::::AAAAAAAAAGTTTTTTTTTTTTTTTTTTTTTTTTATTANACTCTAAGTTTTAGGGTNCATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
9/M13-F* TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAANCNNTATTTTTTGGGGTTNNTTTTCNCNTTNNGNGGGTTNTTTCCATNTTTTNAN
48 ::::::::::::::::::::::::::::::::CCGCATCAAAAAAATAAAAACTTTTTTTTTTTTTTTTTTTTTTTTTTTATNATACTCNAAGTTTTAGGGTACATGTNCACATTGTGCAGGTTAGTTACATATGTATAC
38/M13-F ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::GTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
77/M13-F.1 :::::::::::::::TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTNTGNTTNTTCTGATTTTGGGGTTGTTTTNTACNTTTTTNANGTTTTTCNNTTGTNTTNNN
42 ::::::::::TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAANNAAACNCTAATTTTAGGGTNCATTTNCNCATTGTGCAGGTTANTTACATNTTTNTAC
46 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTANTNNNAANCCNNANTTTTTNGGGNTANTTTTNCCATTTNNCNGGTTTTTTNCNTTTTTTNCC
76 M13 F+R TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATANAATTTAANNTTTAGGGNAAANGNGCAAANTGNGCNGGNTAGNTAAANANGNANAA
57/M13-F.1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTANNAANAANCCCNNNTTTTTNGGGNTNNTTTTCCNNTTNNGGGGGNTTNTTNNANTTTTTTT
L1.3 3' end ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATAC
34/M13-F ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTANCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
23/M13-F* ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCT::::::::::AAGCCGAATTC
17/M13-F* CATGTTNCCCATGCTGCGCCGCACCCACNAATGTTTTTTCTANCATTAGGTTTTTCTCCCCATGCTTTCCCNCCCCCNGCCNAATTC
16/M13-F ATGTGCCATGCNGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTNTATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
6/M13-F ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
19/M13-F ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
52 ATGNTATACATGTTGTCCCATGCCTGGGTGCCGCCNTGCACCCCACTAAATAGTTGTCCATCCNTAAGCAATTTAAGGGTTATTATC
44 TACTGTTATTACCANNGTTGCCCATGCTGGTTGCNCNTTGCACCCCANCNTAANTGTTGTCCANCCTNANCCATCTAGGGTTATNAT
53 ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTN
79/M13-F.1 ANGTGCCATGGTGGNGNGNTGCANCCAATAATGNGTNACCTNGCATTAGGNANATTTNCCAATGGTATCCCTCCCCNAGCCGNATTT
7/M13-F ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
36/M13-F :::::::::::::::::::TGCCCC:::::::::GTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
37/M13-F :::::::::::::::::::::::::::::::::::::::::::::::::::::ATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
67/M13-F.1 ATNTTCCCAGCCGGGGCCCCNNCCCCNCTAATNTTTTCCCCCAACATTAGGTTTATCCCCCCAATGCTTCCCCCCCAAACCNAATTC
2/M13-F* ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATNTCCCAATGCTATCCCTCCCCAAGCCGAATTC
21/M13-F ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
35/M13-F ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
56/M13-R NTTTNCCANGCNGGTGCCCTNCNCCCACTANTTTTTCCCCTACCATTAGGTTTTTCNCCCCNAATGGCNANCCCCCCCCAAGCCAAA
66 ATGTGCCATGGTGGTGCGNTGCACCCANTAATGTGTCATCTAGCATTAGGTATATNTCCCAATGCTATCCCTCCCCAAGCCGAATTC
10/M13-F ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
83/M13-F.1 NTTTNCCANGCTGGTGCCCTNCNCCCNNTANTNTTTCNNCNACCATNAGGTNTNNCNCCCANNGCTNNCCCCCCCAANCAANTCCAC
50 TNTACATTTNNCCATGCCTGGTTGCCGCTNCCCCCCAACTAAATGTTNTCACCCNCAGCCNTTTAGGTTTTANTCNCCCCCAATGCC
49 :::::::::::::::::::::::::::::::::::::::::::::CGCCC:ATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
39/M13-F* ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
15/M13-F ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTANCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
28/M13-F* NTTTNCCNNGCGGGNGCCCCCCCCCCNCNAATNTTTTNNCNACCATTNGGTTTTTCCCCCAATGCTNNCCCCCCCCAANCCAAATTC
84 M13 F+R ATGTGCCATGNTGGTGCGNTGCACCCANTAATGTGTNATTTAGCATTAGGTATATTTCCCAATGNTATCCCTCCCCAAGCCGAATTT
29/M13-F ATGTGCCATGCTGGTGCGCNGCACCCACTAATGTGTCNTCTANCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGCCGAATTC
9/M13-F* NTTTTCCNGGNGGGGGCCCCCNCCCCNNNNTTTTTTNNNCCNNCAANGGNTTNTTTCCCCAATGTTTCCCCCCCCCNANCCAANTTC
48 ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTTTCATCTACCATTAGGTATATTCCCCAATGCTATCCCTCCCCAAGCCGAATTC
38/M13-F ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCATTGCTATCCCTCCCCAAGCCGAATTC
77/M13-F.1 CTNTNCCNANTTTNTTNTCTGCNACCATTTANTTTTNCTCNNTGNNCCCGTCCAATCNCCAATGAATACCCGGCCCNGGCCGAANTC
42 ATTTNCCANGCTGGTGCNCNNCNCCCNCTAATNTTTNNTCNANCATTAGGTNTNTCTCCCAATGCTANCCCCCCCCAANCCNAATTC
46 TTTTTCCAGNGCCCCCCCCCCCTNATNNANTTTTTCCCNCNAACGTGGGTTTTCAACCNCTCCCCCCCCNAACAATCCACCNNATTC
76 M13 F+R ANGNGCCNTGGTGGNGGGGTGCANCCAATAANGNGTTATTTNGCATTAGGGANATTTNCCNANGGTATCCCTCCCC
57/M13-F.1 NNTTTTCCNNGGGGGGNNCCCCCCCCCNNNNNTTTTTTNNNCAANNANGNTTTTNNCCCCAANNNTNCCCCCCCCCNAANCAAATTC
L1.3 3' end ATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCC
Wild-type L1 ORF2, L1 RNA #4
ks500 TGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATAT
18b GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCGGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCGTATAT
25 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATAT
14 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATAT
11Bq GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATGGACAGATCGCTGTGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCTTATAT
3 GAATTCGCCCTTTGGTAAGCCCTCCCGTATNGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGNTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGNCCAAGTTTACTCATATAT
26 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTCACTCATATAT
6 GAATTCGCCCTTAGGTAAGCCCTNCCGTATCGNAGTNATNTACNCNANGGGGAGNCNGGCANCTATGGATGAACGAAATAGACAGATCGCTGANATAGGTGCCTCACTGATTAANCATTGGTGACTGTCAGACCAAGTTTACTCATNNAT
1Bq GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCA::::::::::::::::::::
8 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACNACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAAC:::::::::::::::::::::::::
23 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAACCCTCACTAA::::::::::::::::::::::::::
5 GAATTCGCCCTTTGGTAAGCCCTCCCGNATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAA::::::::::::::::::::::::::::::::::::
20 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAA::::::::::::::::::::::::::::::::::::
27 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAA::::::::::::::::::::::::::::::::::::
17 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTA:::::::::::::::::::::::::::::::::::::
18B/T7 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACT::::::::::::::::::::::::::::::::::::::::::
13 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACNACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACT::::::::::::::::::::::::::::::::::::::::::
14Bq GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
21 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
16 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
19/T7 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACT:::::GGGCGAATTGGAGCTCCACCGCGGTGGCGTCCGCTCTAGAACTAGTGGATCCATGGAATACTATGCAGCCATAA:::::::
24 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
5Bq GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
18 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTGGGGC::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
28Bq GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGT:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACACTTTATGCTTCCGGCTCGTATGTTGTGTGGA
17b GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGAC::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
25Bq GAATTCGCCCTTAGGTAAGCCCTCCCGTATCGTAGTTA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::CGCCTGTATTAGTACCCAATTGCTATTGGCGCATAATCTTTGCCTGT
19b GAATTCGCCCTTGGGTAAGCCCTCCCGTATNGTAGT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ks500 ACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGA
18b ACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATC:::::::::::::::AACTA::::ACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
25 ACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGAT:::::::::::::::::::::::::::::ACTAAAGGGAACAAAAGCTGGAGCTCGGTCTCTCTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
14 ACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAG::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
11Bq ACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
3 ACTTTAGATTGATTTAAAACTTCATTTTTAATTT::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTATTATNCTCTAAGTTTTAG
26 ACTTTAGATTGATTTAAAACTTCATTTTTA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTATACTCTAAGTTTTAG
6 ACTTTAGATTGA:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::GTTTTAG
1Bq ::::::::::::::::::::::::::::::::::::::::::TCCCCG::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTATTATACTCTAAGTTTTAG
8 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AGGTA::::::::::::ACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGGACTCTTTTTTTTTTTTTATTATNCTCTAAGTTTTAG
23 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AGGGAACAAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
5 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::CCCTCACTAAAGGGAACAAAAGCTGGAGNTCGGTCTCTTTATTTTTTTTTTTTTATTATACTCTAAGTTTTAG
20 :::::::::::::::::::CCCTCACTAAAGGGAACAAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTTTTATT::::::ACTAAAGGGAACAAAAGCTGGAGCTCGGNCTCTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
27 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::CCCTCACTAAAGGGAACAAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATNCTCTAAGTTTTAG
17 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
18B/T7 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
13 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ATTATTATACTCTAAGTTTTAG
14Bq ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAACC CGGGGTAACC CTCACTAAAG GGAACAAAAGC TGGAGCTCGG TCTCTTTTTT TTTTTTTTTT TATTATACTC TAAGTTTTAG
21 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAAGCAC::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
16 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AGTTTTAG
19/T7 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
24 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::CTAAGTTTTAG
5Bq ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACTCTAAGTTTTAG
18 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ATTATACTCTAAGTTTTAG
28Bq ATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGATTACGCCGAGCGCGCAATTA::::::::::::ACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
17b :::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAACCCAGAGCCGA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ATTATACTCTAAGTTTTAG
25Bq GTGAAAATGACGCGAAAGAATTCCATTTACGTGACTTGTTTTAAAATAAATTAATATTTTTGCA::::::::::::::::::::::::GGAACAAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
19b ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::ACCCTCNCTAAAGGGAACAAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
L1 3' plus u.ACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGGTCTCTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAG
ks500 TCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGAT
18b GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGNGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCGAAGGGCGAATTC
25 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
14 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
11Bq ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AAAACCTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
3 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCANTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
26 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
6 GGTNCATGTGCACATTGNCGCATGTTNGTACNTATGTATNCATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCNTTAGGTATATCTCCCAATGCTATCCCTCCCCANGGGCGAATTC
1Bq GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
8 GGTACNTGTGCACATTGNGCAGGTTNGNTACATATGTATACATGTGCCATGCTGGNGCNCTGCACCCACTAATGTGCCATCTATCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
23 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
5 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
20 GGTACATGTGCACATTGNGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGNGTCATCTAGCATTAGGTATATNTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
27 GGNNCNTGNGCCCATTGNGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGGGCGCTGCACCCACTAATGGGGNATATANCATTAGGTATATNTNCCAATGCTATCCCTCCCCAAGGGCGAATTC
17 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
18B/T7 :ATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGNCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
13 GGTACATGTGCACATTGTGCAGGTTAGNTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTANCATTAGGTATATGTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
14Bq GGTACATGTG CACATTGTGC AGGTTAGTTA CATATGTATA CATGTGCCAT GCTGGTGCGC TGCACCCACT AATGTGTCAT CTAGCATTAG GTATATCTCC CAATGCTATC CCTCCCCAAG GGCGAATTC
21 :::::::::::::::::::::::::AGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
16 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
19/T7 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
24 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
5Bq GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
18 GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
28Bq GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
17b GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
25Bq GGTACATGTGCACATTGNGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGNGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
19b GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCAAGGGCGAATTC
L1 3' plus u.GGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCC
Wild-type L1 ORF2, Alu RNA #6
ks500 TGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATA
22b GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATCGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATA
2 GAATTCGCCCTTTGGTAACGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTC:::::
11b GAATTCGCCCTTTGGTAA:GCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATA::::::::::::::::::::::::::::::::::::::::::::::::::::
1 GAATTCGCCCTTTGGTAA:GCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTA::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ks500 TACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAG
22b TACTTTAGATTGATTTAAAACTTCA::::::::::::::::::::::::::::::GCTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCG
2 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AGCTCCGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGG
11b ::::::::::::::::::::::::::::::::::::::::::::::::::::::::TTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCG
1 :::::::::::::TTTCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTTTTTTTGANACGGAGTNTCGCTNTGTTGCCCAGGCTGGAGNGCAGNGGCGGGATCTCGGCTCACTGNAAGCTCCGCCTCCCG
TPA Alu - 25 TTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCG
ks500 ATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACA
22b GGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGGACTACAGGCGCCCGCCACTACGCCCGGCTATTTTTTGTAGTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGAAGGGCGAATTC
2 ACTACAGGCGCCCGCCACTACGCCCGGCTATTTTTTGTAGTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGAAGGGCGAATTC
11b GGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGGACTACAGGCGCCCGCCACTACGCCCGGCTATTTTTTGTAGTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGAAGGGCGAATTC
1 GGTTCATGCCATTNTCCTGCCTCAGCCTCCCAAGTAGCTAGGACTACAGGNGCCCGCCACTACGCCCGGNTATTTTTTGNAGTTTTAGTANANACGGGGTTTCACCGTTTTAGCCGAAGGGCGAATTC
TPA Alu - 25 GGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGGACTACAGGCGCCCGCCACTACGCCCGGCTATTTTTTGTAGTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATC
Wild-type L1 ORF2, anti-sense, S. cerevisiae URA3 RNA
ks500 TGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATA
16 GAATTCGCCCTTTGGTAACGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAGATAGACAGATCGCTGAGATAGGTGCCTCCCTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATA
9 GAATTCGCCCTTTGGTAAGGCCCTCCCGTATCGTAGTTACCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATA
4 GAATTCGCCCTTTGGTAACGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCC::::::::::::::::::::::::::::::::::::::::::::::
15 GAATTCGCCCTTTGGTAAGCCCTCCCGTATCGTAGTTATCTACAC::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
antisense ur.ATGTCGAAAGCTACATATAAGGAACGTGCTGCTACTCATCCTAGTCCTGTTGCTGCCAAGCTATTTAATATCATGCACGAAAAGCAAACAAACTTGTGTGCTTCATTGGAT
ks500 TACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAG
16 TACTTTAGATTGATTTAAAACTTC::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
9 TACTTTAGATTAATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTT:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
4 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::AATTCCTGCAGCCCGGGGGATCCATGTCGAAAGCTACATATAAGGAACGTGCTGCTACTCATCCTAGTCCTGTTGCTGCCAAGCTATTT
15 ::::::::::::::::::::::::::::::::::::::::::::::::::::CTCCCGTATCGTAGTTATCTACACCTCCCGTATCGTAGTTATCTACACCTCCCGTATCGTAGTTATCTACACCTCCCGTATCGTAGTTATCTACACCC
antisense ur.GTTCGTACCACCAAGGAATTACTGGAGTTAGTTGAAGCATTAGGTCCCAAAATTTGTTTACTAAAAACACATGTGGATATCTTGACTGATTTTTCCATGGAGGGCACAGTTAAGCCGCTAAAGGCATTATCCGCCAAGTACAATTTTTAC
ks500 ATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTCCTTCTAG
16 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
9 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
4 AATATCACGCACGAAGAGCAAACAAACTTGTAGAGCACTGGGCAGAAATCACATTGCGTCAACACCCGC:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
15 CCC::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::TACGAATGCACACGGTGTGGTGGGCCCAGGTATTGTTAGCGGTTTGAAGCAGGCGGCAG
antisense ur.TCTTCGAAGACAGAAAATTTGCTGACATTGGTAATACAGTCAAATTGCAGTACTCTGCGGGTGTATACAGAATAGCAGAATGGGCAGACATTACGAATGCACACGGTGTGGTGGGCCCAGGTATTGTTAGCGGTTTGAAGCAGGCGGCAG
ks500 TGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGC
16 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::C::::::
9 :::::::::CC::::::::::::::::::::GATGTTAGCAGAATTGTCATGCAAGGGCTCCCTATCTACTGGAGAATATACTAAGGGTACTGTTGACATTGCGAAGAGCGACAAAGATTTTGTTATCGGCTTTATTGCTCAAAGAGACA
4 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
15 AAGAAGTAACAAAGGAACCTAGAGGCCTTTTGATGTTAGCAGAATTGTCATGCAAGGGCTCCCTATCTACTGGAGAATATACTAAGGGTACTGTTGACATTGCGAAGAGCGACAAAGATTTTGTTATCGGCTTTATTGCTCAAAGAGACA
antisense ur.AAGAAGTAACAAAGGAACCTAGAGGCCTTTTGATGTTAGCAGAATTGTCATGCAAGGGCTCCCTATCTACTGGAGAATATACTAAGGGTACTGTTGACATTGCGAAGAGCGACAAAGATTTTGTTATCGGCTTTATTGCTCAAAGAGACA
16 ::::::::::::::GAAGGTTACGATTGGTTGATTATGACACCCGGTGTGGGTTTAGATGACAAGGGAGACGCATTGGGTCAACAGTATAGAACCGTGGATGATGTGGTCTCTACAGGATCTGACATTATTATTGTTGGAAGAGGACTAT
9 TGGGTGGAAGAGATGAAGGTTACGATTGGTTGATTATGACACCCGGTGNGGGTTTAGATGACAAGGGAGACGCATTGGGTCAACAGTATAGAACCGTGGATGATGTGGTCTCTACAGGATCTAACATTATTATTGNTGGAAGAGGACTAT
4 :::::::::::::::AAGGTTACGATTGGTTGATTATGACACCCGGTGTGGGTTTAGATGACAAGGGAGACGCATTGGGTCAACAGTATAGAACCGTGGATGATGTGGTCTCTACAGGATCTGACATTATTATTGTTGGAAGAGGACTAT
15 TGGGTGGAAGAGATGAAGGTTACGATTGGTTGATTATGACACCCGGTGTGGGTTTAGATGACAAGGGAGACGCATTGGGTCAACAGTATAGAACCGTGGATGATGTGGTCTCTACAGGACCTGACATTATTATTGTTGGAAGAGGACTAT
antisense ur.TGGGTGGAAGAGATGAAGGTTACGATTGGTTGATTATGACACCCGGTGTGGGTTTAGATGACAAGGGAGACGCATTGGGTCAACAGTATAGAACCGTGGATGATGTGGTCTCTACAGGATCTGACATTATTATTGTTGGAAGAGGACTAT
16 TTGCAAAGGGAAGGGATGCTAAGGTAGAGGGTGAACGTTACAGAAAAGCAGGCTGGGAAGCATATTTGAGAAGATGCGGCCAGCAAAACTAAGATCTGCGAAGGGCGAATTC
9 TTGCAAAGGGAAGGGATGCTAAGGTAGAGGGTGAACGTTACACAAAAGCAGGCTGGGAAGCATATTTGAGAAGATGCGGCCAGCAAAACTAAGATCTGCGAAGGGCGAATTC
4 TTGCAAAGGGAAGGGATGCTAAGGTAGAGGGTGAACGTTACAGAAAAGCAGGCTGGGAAGCATATTTGAGAAGATGCGGCCAGCAAAACTAAGATCTGCGAAGGGCGAATTC
15 TTGCAAAGGGAAGGGATGCTAAGGTAGAGGGTGAACGTTACAGAAAAGCAGGCTGGGAAGCATATTTGAGAAGATGCGGCCAGCAAAACTAAGATCTGCGAAGGGCGAATTC
antisense ur.TTGCAAAGGGAAGGGATGCTAAGGTAGAGGGTGAACGTTACAGAAAAGCAGGCTGGGAAGCATATTTGAGAAGATGCGGCCAGCAAAACTAA
Five prime end L1 insertions (TPRT using the second nick):
First capitalized sequence: JB1180 oligo
Following lower case sequence: target DNA
Terminal capitalized sequence: 5' end of the transposed cDNA
(N)= deletion or missing sequence
)N(= addition or extra nucleotides
01/03- 7nt 5' cDNA deletion
(TGGTAA)GCCCTCCCGTATCGTAGTtatctacgcgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagacc(GGGCGAA)TTGGAGCTTCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCTATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAG
05/09- 1nt 5' cDNA addition
TGGTAAGCCCTCCCGTATCGTAGTtatctacacgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaacttcatttttaatttaaaaggatctaggtg)t(GGGCGAATTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCATGGAATACTATGCAGCCATAAAAAATGATAAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAG
08/12- 1-3nt cDNA deletion
TGGTAAGCCCTCCCGTATCGTAGTtatctacacgacggggagtcaggcaactatggatgagcgacatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaacttcatttttaatttaaaa)g(GGCGAATTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAG
13- 1nt cDNA addition
TGGTAAGCCCTCCCGTATCGTAGTtatctacacgacggggagtccaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaagtttactcatatatactttagattgattta)t(GGGCGAATTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAG
18- 1nt cDNA addition
TGGTAAGCCCTCCCGTATCGTAGTtatctacacgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaacttcatttttaatttaaaaggatctaggtgaagatcctttttgataatctcatga)t(GGGCGAATTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAG
20- no additions or deletions
TGGTAAGCCCTCCCGTATCGTAGTtatctacacGGGCGAATTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCATGGAATACTATGCAG
CCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAG