Part 1. the Nucleotide Sequences of Slyabby Gene Family

Online source 6 YABBY genes

Part 1. The nucleotide sequences of SlYABBY gene family

Part 2. The protein sequences of SlYABBYs

Part 3. The protein sequences of AtYABBYs

Part 4. The YABBY domain sequences of AtYABBYs and SlYABBYs

Part 5. Alignment of amino acids in YABBY domains of AtYABBYs and SlYABBYs

Part 6. The paralogs in SlYABBY family

Part 7. The orthologs between AtYABYs and SlYABBYs

Part 8. The expression pattern of YABBY genes in wild tomato LA1589

Part 9. The RT-PCR primers

Part 10. Phylogenetic tree of the YABBY CDSs among Arabidopsis, cucumber, grape, poplar, potato, and tomato

Part 11. Ks value and estimated divergence time of YABBY2 subfamily genes.

Part 12. Predicted CDSs matching between the segments of SL2.40ch06 and SL2.40ch11 containing SlYABBY2a and FAS (SlYABBY2b) gene respectively

Part 13. The predicted genes in SL2.40ch06:41879001..42121000 containing SlYABBY2a.

Part 14.The predicted genes in SL2.40ch11:52133001..52357000 SlYABBY2b.

Part 15. Dot plot of two DNA sequences, SL2.40ch06:41879001..42121000 containing SlYABBY2a and SL2.40ch11: 52133001..52357000 containing SlYABBY2b.

Part 16. Dot plot of two DNA sequences, tomato SL2.40ch06:41879001..42121000 containing SlYABBY2a and Potato PGSC0003DMS000002348:230001..522000

Part 17. Dot plot of two DNA sequences, tomato SL2.40ch11:52133001..52357000 containing SlYABBY2b and Potato PGSC0003DMS000000867:200001..503000

Part 1. The nucleotide sequences of SlYABBY gene family

>Solyc01g010240.2.1 genomic_reference:SL2.40ch01 gene_region:5028897-5031428 transcript_region:SL2.40ch01:5028897..5031428+ go_terms:GO:0005515,GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 ***- Q5EMM8_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "

ATGTCTTCCTCATCTCCTAATTCCTCTTGTCTCAACTTATTGGAATCTGCTGATCATAAAATTAACACCATGGATCCTTCTGAACATCTTTGCTATGTCCGTTGCAGTTTTTGTAACACTATACTCGCGGTGGGAATACCATGCAAGAAGTTGTTGGATACTGTGACAGTGAAATGTGGGCATTGTGGTAATCTTTCCTTTTTAAGTAGTAGACCTCCAATTCAACCACAATTTTTTGATCACCAACCCATTCTTCAGCATCAAGATTTCTTCAACAATTTCAAGAAGGGACAGTCTTCATCTTCAAGTGAACCATCATCTCCAAAGGCACCTTTTGTTGTAAAACCTCCTGAGAAGAAGCACAGGCTACCATCTGCTTACAATCGGTTTATGAAGGATGAGATACAGCGTATTAAAGCAGCACATCCACAGATACCACATAGAGAAGCTTTCAGTGCAGCAGCTAAAAATGTACATTCCAAATACTCCAAATGGGACCTTGGCTGA

>Solyc01g091010.2.1 genomic_reference:SL2.40ch01 gene_region:76475369-76478983 transcript_region:SL2.40ch01:76475369..76478983- go_terms:GO:0005515,GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "

ATGTCGTCTTCATCTGCTGCTTTTGCTCCGGACCACCACCTCCACCACCATCACCTCTCTCCTCCTTCAGGAGAACAACTCTGTTATGTCCAATGCAACTTTTGTGACACTGTTCTCGCGGTGAGTGTTCCTTGCTCAAGTTTCTTCAAAAATGTGACAGTAAGATGTGGTCATTGCACCAATCTTCTCTCTGTCAACATTATTCTTCCCACTGCTGCTAATCAGCTTCATCTCCCACATTCTTTCTTTTCACCTCACAATCTTCTGGATGAGATTCGGAATAATCCACCAAGTTTGTTGATGAATCAACAAATTAACCCAAATGAATCACTCATGCCAGTCCGAGGAGGAGTTGATGAAATTCCAAAGCCACCAGTCGCAAACAGACCTCCGGAGAAGCGACAGAGAGTCCCATCTGCTTACAATCGATTCATCAAGGACGAGATCCAACGTATCAAAGCTGGAAATCCCGATATAAGTCACAGGGAGGCCTTCAGTGCTGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCAACCCGTGAAGAAACCAAATGCATGTCAACAGGAAGGGGAGGATGTTCTGATGAAGGAAGGGTTTCTTGCTCCAGCAAACATTGGTGTATCTCCTTACTGA

>Solyc05g005240.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:191257-193043 transcript_region:SL2.40ch05:191257..193043- go_terms:GO:0005515,GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "

ATGTCAACATTGAATAACCATTTGTTTGAACTCCAAGACACAATATGCTATGTGCAATGTGGCTATTGTACTACAATATTACTTGTTAGTGTGCCATGCAGCAGCTTGTGCAACAAAGTAGTAACAGTGAGATGTGGGCATTGCACTACTCTCCTCTCTCTCAACTTGATTAAACCTTCTCTTCATCTCTTTGCTTCCTTCGACCAAACTCATCAGCCACCAGAAGTTGACAAGGATGAAACTGATGATGCTAATAAGAAGAATTCAAACTCAGATGAAGAAGATCAATTGGAGAATAATGTTCTTCCACTTAATCAAGTCGTCAATAAACCTCCAGAGAAGAGACAGAGAGCTCCTTCGGCTTATAATTGCTTTATCAAAGAAGAGATCAAGAGGCTGAAGACCCTATACCCCAACATGACTCACAAGCAAGCTTTCAGTACAGCAGCAAAAAATTGGGCCCACTTTCCACCAAGTCAACATAGAGGAGGCTGTAGTCTTGGAGAGAGGAAAATGGCAAAGGTTTCTGCTGCAAGAAACTCCATGGTCCCAAGAGATAGCAACGGTTTGATTCCTTGA

>Solyc05g012050.2.1 genomic_reference:SL2.40ch05 gene_region:5275528-5277367 transcript_region:SL2.40ch05:5275528..5277367- go_terms:GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 ***- Q5EMM8_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "

ATGGATTATGTTCAATCTTCTGAGCATCTTTGCTACGTCCGTTGCAATTTTTGTAACACTGTTTTAGCGGTTGGAATTCCATACAAGAGGCTAATGGATACTGTGACAGTGAAATGTGGCCATTGTAGCAATCTTTCATTTTTAACTACTAGACCTCCAATTCAAGGTCAATGCTTTGATCATCAACCCAATATTCAGGGCTATTGTAGTGAATTAAAAAATAAGGGGCAAGCTTCATCATCTACCTCATCAACTTCTAGTGAACCTTTATCTCCAAAGGCACCTTTTGTTGTAAAACCTCCTGAGAAGAAACACAGGCTTCCATCTGCCTACAATCGATTCATGAAGGAAGAGATACAACGTATCAAATCTGAAAATCCAGAGATACCACATAGAGAAGCTTTCAGTGCAGCTGCTAAAAATTGGGCTAGGTACCTTCCTAATCCACCAAATTCTGGAAATACCAACAATGTTTAG

>Solyc06g073920.2.1 genomic_reference:SL2.40ch06 gene_region:42038601-42044688 transcript_region:SL2.40ch06:42038601..42044688+ go_terms:GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "

ATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAA

>Solyc07g008180.2.1 genomic_reference:SL2.40ch07 gene_region:2916878-2921216 transcript_region:SL2.40ch07:2916878..2921216+ go_terms:GO:0005515,GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "

ATGGCAAGTTGCATTGATGTTGCTTCTGATCAACTTTGCTATATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTATTTGATATTGTGACTGTTCGTTGTGGACATTGCACAAATTTATGGTCCGTTAATATGGCAGCTGCATTTCAGTCCTCTTCTTCTGCTTCGTGGCAAAATCATCAGGTTCCAAACTACACTGCTCCTGAGTATAGGATGGATTTTGGTTCATCAACCAAATGCAACATGAACAGGATGTCAATGAGAACTCCAATCACAAACAATGTTCACGAGGAGAGGATTGTCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAAGAAATTCAGAGGATTAAAGCTAATAATCCAGATATCAGTCACAGGGAAGCATTTAGTACTGCTGCCAAAAATTGGGCACACTTCCCTCATATTCACTTTGGACTCATGTTGGAGAGCAACAATCAAGCCAAACTTGCTTGTGGGAGCAGAAAACTATAA

>Solyc08g079100.2.1 genomic_reference:SL2.40ch08 gene_region:59908783-59911941 transcript_region:SL2.40ch08:59908783..59911941- go_terms:GO:0005515,GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 **-- Q5EMM8_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "

ATGTCCTCTTCAAATAGCTTATCATTGGACCACCTTCCTCCTCCACCTCCTTCCGAGCAGCTCTGCTATGTCCATTGCAATGTTTGTGACACCGTCCTCGCGGTAAGTGTACCGTGCACAAGTTTGTTCAAAACTGTGACGGTTCGATGTGGACACTGCACTAATCTTTTGCCTGGATGGCTTTTGCCTTCCACTAATCATCATCATCATCATTTTGGTCACACTTACTTCTCTCCTTCACACAATCTTCTGGATGAAATAAGCAATGCAACCCCAAATTTCTTGATGAATCAGAGTAATTCTGCTCATGAATTTGTGCAGCTGCCTGCTCGACCTGGATTTGATGATCTTCCTAGACCACCACCCGTTGTTAACAGACCTCCTGAGAAGAGACAGCGAGTCCCTTCTGCTTACAACCGATTCATCAAGGAAGAAATCCAACGCATAAAAGCAGGGAATCCTGATATTAGCCACAGAGAAGCCTTCAGCGCCGCTGCGAAAAATTGGGCCCACTTTCCACACATTCAATTTGGTCTCATGCCTGATCAGACTGTTAAGAGGACTAATGTGCGTCAGCAGGATGGAGAAGATGTTCTTACGAAAGATGGTTTGTTTAATACATCAGCCAATGTTAGTGTGTCTCCTTACTGA

>Solyc11g071810.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52249470-52255656 transcript_region:SL2.40ch11:52249470..52255656- functional_description:"CRABS CLAW (Fragment) (AHRD V1 **-- Q5EMM7_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "

ATGTCATTCGATATGACTTTTTCTTCTTCACCTTCCTCAGAACGCGTTTGTTACTTGCAATGTAATTTTTGCAACACCATTCTTGCGGTTAGTGTTCCATGCAGCAACATGTTAACCTTAGTGACAGTAAGATGTGGGCATTGTGCAAATATGCTTTCTGTTAATATTGGATCTTTAATTCAAGCTCTACCCCTTCAAGATGTTCAAAAGCTGCAAAGGCAACAGTACACAAATGTTGAAAATAATTCTAGTAATTATAAAGCTTATGGTTCATCATCATCATCCTCTTCAAAGTTCAACAGATATTCTTCCATTGTTTCTCCTCAAATTGAACCTAAAATCCCTTCGATTCGTCCACCAGAGAAAAGACAACGTGTTCCTTCTGCGTACAACCGATTCATCAAGGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAATTGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAG

>Solyc12g009580.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2837633-2843798 transcript_region:SL2.40ch12:2837633..2843798- go_terms:GO:0005515,GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 **-- Q5EMM7_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "

ATGTCATCAAGCTACATTGATTCTACTAATTTTGAGAAACTTTGCTATATCCCTTGCAATTTTTGCAATATTGTTCTTGTGGTGAGTGTTCCATGCAGCAACTTGCTTGATATAGTGACAGTTAGATGTGGACATTGCACAAATTTGTGGTCCGTTAATATGGCTGCTGCATTTCACACCAATTCTTGGCAAAATCATCTTCATCATCAGGTAGGAAACTACACTAATTCTCCTCATGATCAATACAAGGTAGATTTTGCTTCATCATCCATCACAAACAACTCTACTCTTGAGGAGAGGAACGTAAATCGACCTCCGGAAAAGAGGCAACGAGGACCTTCTGCTTATAATCAGTTTATAAAAGAGGAGATTCAAAGGATCAAGGCTAATAATCCAGATATCACTCATAGGGAAGCATTTAGTACTGCTGCTAAAAATTGGGCACACTTCCCTCACATTCAGTTTGGCCTCATGTTAGAGACTGACAATCAAGCTAAACTTGGTGCTAGTGAGAACAAAGAAAAGCTTATAATGCATAGAGCTGCATTGCCAAAAATAAAGACCTTCACCTTCTAA

Part 2. The protein sequences of SlYABBYs

MSSSSPNSSCLNLLESADHKINTMDPSEHLCYVRCSFCNTILAVGIPCKKLLDTVTVKCGHCGNLSFLSSRPPIQPQFFDHQPILQHQDFFNNFKKGQSSSSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAAHPQIPHREAFSAAAKNVHSKYSKWDLG*

MSSSSAAFAPDHHLHHHHLSPPSGEQLCYVQCNFCDTVLAVSVPCSSFFKNVTVRCGHCTNLLSVNIILPTAANQLHLPHSFFSPHNLLDEIRNNPPSLLMNQQINPNESLMPVRGGVDEIPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDQPVKKPNACQQEGEDVLMKEGFLAPANIGVSPY*

MSTLNNHLFELQDTICYVQCGYCTTILLVSVPCSSLCNKVVTVRCGHCTTLLSLNLIKPSLHLFASFDQTHQPPEVDKDETDDANKKNSNSDEEDQLENNVLPLNQVVNKPPEKRQRAPSAYNCFIKEEIKRLKTLYPNMTHKQAFSTAAKNWAHFPPSQHRGGCSLGERKMAKVSAARNSMVPRDSNGLIP*

MDYVQSSEHLCYVRCNFCNTVLAVGIPYKRLMDTVTVKCGHCSNLSFLTTRPPIQGQCFDHQPNIQGYCSELKNKGQASSSTSSTSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKSENPEIPHREAFSAAAKNWARYLPNPPNSGNTNNV*

MSLDMTYSSSSSERVCYVHCNFCSTILAVSVPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQDLQRQNESSIEDGMSRGYGSSSSSTNSFHRFSPIPTDHDQPRSPPIRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTNKLDHAVAGEGPQKTIGLY*

MASCIDVASDQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSSSSASWQNHQVPNYTAPEYRMDFGSSTKCNMNRMSMRTPITNNVHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKLACGSRKL*

MSSSNSLSLDHLPPPPPSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPSTNHHHHHFGHTYFSPSHNLLDEISNATPNFLMNQSNSAHEFVQLPARPGFDDLPRPPPVVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGLMPDQTVKRTNVRQQDGEDVLTKDGLFNTSANVSVSPY*

MSFDMTFSSSPSSERVCYLQCNFCNTILAVSVPCSNMLTLVTVRCGHCANMLSVNIGSLIQALPLQDVQKLQRQQYTNVENNSSNYKAYGSSSSSSSKFNRYSSIVSPQIEPKIPSIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLEGNK*

MSSSYIDSTNFEKLCYIPCNFCNIVLVVSVPCSNLLDIVTVRCGHCTNLWSVNMAAAFHTNSWQNHLHHQVGNYTNSPHDQYKVDFASSSITNNSTLEERNVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIQFGLMLETDNQAKLGASENKEKLIMHRAALPKIKTFTF*

Part 3. The protein sequences of AtYABBYs

>AT1G08465.1 | Symbols: YAB2 | Plant-specific transcription factor YABBY family protein | chr1:2676033-2679382 FORWARD LENGTH=184

MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVAGQKSNGYY

>AT1G23420.1 | Symbols: INO | Plant-specific transcription factor YABBY family protein | chr1:8317423-8319104 FORWARD LENGTH=231

MTKLPNMTTTLNHLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNKRAASDQCFCEEDNNAILPCNVFEDHEESNNGFRERKAQRHSIWGKSPFE

>AT1G69180.1 | Symbols: CRC | Plant-specific transcription factor YABBY family protein | chr1:26007734-26008940 REVERSE LENGTH=181

MNLEEKPTMTASRASPQAEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTLQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPNSPTSITSGGHNMIHGLGFGEKK

>AT2G26580.1 | Symbols: YAB5 | plant-specific transcription factor YABBY family protein | chr2:11303923-11306739 REVERSE LENGTH=164

MANSVMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKIA

>AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcription factor YABBY family protein | chr2:18628450-18630552 REVERSE LENGTH=229

MSMSSMSSPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEGFYAPAAANVGVTPY

>AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription factor YABBY family protein | chr4:72804-75089 REVERSE LENGTH=240

MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFYGSAANVGVAHN

Part 4. The YABBY domain sequences of AtYABBYs and SlYABBYs

>AtYABBY1

PDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL

>AtYABBY2

MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL

>AtYABBY3

PDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL

>AtYABBY5

ANSVMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL

AtINO

NHLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNKR

AtCRC

SRASPQAEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTLQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPNS

SlFAS

FSSSPSSERVCYLQCNFCNTILAVSVPCSNMLTLVTVRCGHCANMLSVNIGSLIQALPLQDVQKLQRQQYTNVENNSSNYKAYGSSSSSSSKFNRYSSIVSPQIEPKIPSIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL

>SlYABBY2a

TYSSSSSERVCYVHCNFCSTILAVSVPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQDLQRQNESSIEDGMSRGYGSSSSSTNSFHRFSPIPTDHDQPRSPPIRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL

>SlYABBY1a

HHHLSPPSGEQLCYVQCNFCDTVLAVSVPCSSFFKNVTVRCGHCTNLLSVNIILPTAANQLHLPHSFFSPHNLLDEIRNNPPSLLMNQQINPNESLMPVRGGVDEIPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL

>SlYABBY1b

PPPPSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPSTNHHHHHFGHTYFSPSHNLLDEISNATPNFLMNQSNSAHEFVQLPARPGFDDLPRPPPVVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL

>SlYABBY5a

SCIDVASDQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSSSSASWQNHQVPNYTAPEYRMDFGSSTKCNMNRMSMRTPITNNVHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL

>SlYABBY5b

IDSTNFEKLCYIPCNFCNIVLVVSVPCSNLLDIVTVRCGHCTNLWSVNMAAAFHTNSWQNHLHHQVGNYTNSPHDQYKVDFASSSITNNSTLEERNVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIQFGL

SlCRCb

MDYVQSSEHLCYVRCNFCNTVLAVGIPYKRLMDTVTVKCGHCSNLSFLTTRPPIQGQCFDHQPNIQGYCSELKNKGQASSSTSSTSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKSENPEIPHREAFSAAAKNWARYLPNPP

SlINO

NHLFELQDTICYVQCGYCTTILLVSVPCSSLCNKVVTVRCGHCTTLLSLNLIKPSLHLFASFDQTHQPPEVDKDETDDANKKNSNSDEEDQLENNVLPLNQVVNKPPEKRQRAPSAYNCFIKEEIKRLKTLYPNMTHKQAFSTAAKNWAHFPPSQHRG

SlCRCa

INTMDPSEHLCYVRCSFCNTILAVGIPCKKLLDTVTVKCGHCGNLSFLSSRPPIQPQFFDHQPILQHQDFFNNFKKGQSSSSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAAHPQIPHREAFSAAAKNVHSKY

Part 5. Alignment of amino acids in YABBY domains of AtYABBYs and SlYABBYs

AtINO --NHLFDLPGQICHVQCGFCTTILLVSVPFTSLS-MVVTVRCGHCTSLLSVN------LM

SlINO --NHLFELQDTICYVQCGYCTTILLVSVPCSSLCNKVVTVRCGHCTTLLSLN------LI

AtYABBY1 PDHFSP--SDHLCYVQCNFCQTILAVNVPYTSLF-KTVTVRCGCCTNLLSVN--MRSYVL

AtYABBY3 PDHFSS--TDQLCYVHCSFCDTVLAVSVPPSSLF-KTVTVRCGHCSNLLSVTVSMRALLL

SlYABBY1a HHHLSPPSGEQLCYVQCNFCDTVLAVSVPCSSFF-KNVTVRCGHCTNLLSVN-----IIL

SlYABBY1b ----PPPPSEQLCYVHCNVCDTVLAVSVPCTSLF-KTVTVRCGHCTNLLPGW-----LLP

SlYABBY5a -SCIDVAS-DQLCYIPCNFCNIVLAVSVPCSSLF-DIVTVRCGHCTNLWSVN--MAAAFQ

SlYABBY5b ---IDSTNFEKLCYIPCNFCNIVLVVSVPCSNLL-DIVTVRCGHCTNLWSVN--MAAAFH

AtYABBY5 --ANSVMATEQLCYIPCNFCNIILAVNVPCSSLF-DIVTVRCGHCTNLWSVN--MAAALQ

SlFAS --FSSSPSSERVCYLQCNFCNTILAVSVPCSNML-TLVTVRCGHCANMLSVN--IGSLIQ

SlYABBY2a --TYSSSSSERVCYVHCNFCSTILAVSVPCNSMM-TIVTVRCGHCANLLSVN--IAPSLQ

AtYABBY2 --MSVDFSSERVCYVHCSFCTTILAVSVPYASLF-TLVTVRCGHCTNLLSLN--IGVSLH

ADE77109 ---DLGIGAGHLCYIQCNYCSTVLAVNVPGSSLL-EIVPVRCGHCTSLLSVN--MGGLFQ

SlCRCb --MDYVQSSEHLCYVRCNFCNTVLAVGIPYKRLM-DTVTVKCGHCSNLSFLT--TRPPIQ

SlCRCa --INTMDPSEHLCYVRCSFCNTILAVGIPCKKLL-DTVTVKCGHCGNLSFLS--SRPPIQ

AtCRC --SRASPQAEHLYYVRCSICNTILAVGIPLKRML-DTVTVKCGHCGNLSFLT--TTPPLQ

AtINO KASFIPLHLLASLSHLDETGKEEVAATDGVEE--EAWKVNQEKENSPTTLVSSSDNED--

SlINO KPS---LHLFASFDQTHQPPEVDKDETD------DANKKNSNS-----DEEDQLE--

AtYABBY1 P-ASNQLQLQLGPHSYFNPQDILEELRDAPSNMNM-MMMNQHPTMNDIPSFMDLHQQH--

AtYABBY3 PSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGR

SlYABBY1a P--TAANQLHLPHSFFSP-HNLLDEIRNNPP----SLLMNQQINPNE-SLMPVRGGVD--

SlYABBY1b S--TNHHHHHFGHTYFSPSHNLLDEISNATP----NFLMNQSNSAHEFVQLPARPGFD--

SlYABBY5a SSSSASWQNHQVPNYTAP------EYRMD-----FGSSTKCNMNRMSMRTPITNN---

SlYABBY5b TNSWQNHLHHQVGNYTNSP-----HDQYKVD-----FASSS------ITNNS--

AtYABBY5 SLSRP---NFQATNYAVP------EYGSS-----SRSHTKIP------SRISTRT--

SlFAS ALPLQDVQKLQRQQYTNVENNSSNYKAYGSS-----SSSSSKFNRYS-----SIVSPQ--

SlYABBY2a SLPIQDLQ---RQNESSIEDGMS--RGYGSS-----SSSTNSFHRFS-----PIPTDH--

AtYABBY2 QTSAPPIHQDLQPHRQHTTSLVTR-KDCASS-----SRSTNNLSEN------IDR--

ADE77109 SSTPQEVEQSFNENNYSPSCPSQENKSCSSS-----SPKSRENSVIS-----GAESET--

SlCRCb GQCFDHQPNIQG--YCSELKNKGQASSSTSS------TSSEPLS------

SlCRCa PQFFDHQPILQHQDFFNNFK-KGQSSS------SSEPSS------

AtCRC GHVSLTLQMQSFG--GSDYKKGSSSSSSSST------SSDQPPS------

AtINO -----EDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKN-

SlINO -----NNVLPLNQVVNKPPEKRQRAPSAYNCFIKEEIKRLKTLYPNMTHKQAFSTAAKN-

AtYABBY1 ------EIPKAP-PVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN-

AtYABBY3 SVDHLQEMPRPP-PANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN-

SlYABBY1a ------EIPKPP-VANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN-

SlYABBY1b ------DLPRPPPVVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN-

SlYABBY5a ------VHEERI--VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN-

SlYABBY5b ------TLEERN--VNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKN-

AtYABBY5 ------ITEQRI--VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN-

SlFAS ------IEPKIP--SIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN-

SlYABBY2a ------DQPRSP--PIRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN-

AtYABBY2 ------EAPRMP--PIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKN-

ADE77109 -----VKPISTGLTDCGTTEKRQRAPSAYNRFIRAEIQRIKAVNPEISHREAFSAAAKN-

SlCRCb ------PKAP-FVVKPPEKKHRLPSAYNRFMKEEIQRIKSENPEIPHREAFSAAAKN-

SlCRCa ------PKAP-FVVKPPEKKHRLPSAYNRFMKDEIQRIKAAHPQIPHREAFSAAAKNV

AtCRC ------PSPP-FVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKN-

AtINO WAHFPPAHNKR

SlINO WAHFPPSQHRG

AtYABBY1 WAHFPHIHFGL

AtYABBY3 WAHFPHIHFGL

SlYABBY1a WAHFPHIHFGL

SlYABBY1b WAHFPHIQFGL

SlYABBY5a WAHFPHIHFGL

SlYABBY5b WAHFPHIQFGL

AtYABBY5 WAHFPHIHFGL

SlFAS WAHFPHIHFGL

SlYABBY2a WAHFPHIHFGL

AtYABBY2 WAHFPHIHFGL

ADE77109 WAHLGLML---

SlCRCb WARYLPNPP--

SlCRCa HSKY------

AtCRC WAKYIPNS---

Part 6. The paralogs in SlYABBY family

One paralog / The other paralog / Smith-Waterman score / Z-score / Bits / E Value / Identity / Similar / Overlap (aa)
Name / Length (aa) / Name / Length (aa)
SlCRCa / 168 / SlCRCb / 158 / 544 / 712.7 / 138.1 / 6.9E-34 / 75.9% / 88.3% / 137
SlYABBY1a / 218 / SlYABBY1b / 216 / 740 / 887.1 / 171.2 / 1.3E-43 / 66.5% / 82.1% / 224
SlYABBY2a / 192 / SlFAS (SlYABBY2b) / 177 / 672 / 849.4 / 163.8 / 1.7E-41 / 72.3% / 90.4% / 177
SlYABBY5a / 180 / SlYABBY5b / 191 / 645 / 736.1 / 142.9 / 3.4E-35 / 69.9% / 84.4% / 186

Part 7. The orthologs between AtYABYs and SlYABBYs

SlYABBYs / AtYABBYs / Smith-Waterman score / Z-score / Bits / E Value / Identity / Similar / Overlap (aa)
Name / Length (aa) / Name / Length (aa)
SlCRCa / 168 / AtCRC / 181 / 497 / 577.4 / 113.3 / 2.4E-26 / 64% / 79.5% / 161
SlCRCb / 158 / AtCRC / 181 / 543 / 633.1 / 123.5 / 1.9E-29 / 66.7% / 84.3% / 159
SlINO / 192 / AtINO / 231 / 496 / 606.8 / 119.3 / 5.4E-28 / 52.1% / 70.4% / 213
SlYABBY1a / 218 / AtYAB1 / 229 / 725 / 734.6 / 143.1 / 4.2E-35 / 64.5% / 81.6% / 234
SlYABBY1a / 218 / AtYAB3 / 240 / 685 / 700.5 / 136.9 / 3.3E-33 / 61.1% / 75.8% / 244
SlYABBY1b / 216 / AtYAB1 / 229 / 640 / 640.1 / 125.6 / 7.6E-30 / 58.2% / 79.3% / 232
SlYABBY1b / 216 / AtYAB3 / 240 / 637 / 636.7 / 125.1 / 1.2E-29 / 55.8% / 75.6% / 242
SlYABBY2a / 192 / AtYAB2 / 184 / 605 / 687.8 / 134 / 1.7E-32 / 64.6% / 79.3% / 198
SlFAS (SlYABBY2b) / 177 / AtYAB2 / 184 / 538 / 681.1 / 132.6 / 4E-32 / 63.5% / 80.7% / 181
SlYABBY5a / 180 / AtYAB5 / 164 / 668 / 807.3 / 155.8 / 3.7E-39 / 76.4% / 86.2% / 174
SlYABBY5b / 191 / AtYAB5 / 164 / 570 / 730.9 / 141.8 / 6.7E-35 / 69% / 86.7% / 158

Part 8. The expression pattern of YABBY genes in wild tomato LA1589.

1, Root; 2, Shoot; 3, Stem; 4, Young leaf; 5, Mature leaf; 6, FL-<10dba; 7, FL-10dba; 8, FL-5dba; 9, FL-2dba; 10, FL-anthesis; 11, Ovary-anthesis; 12, FR-2dpa; 13, FR-5dpa; 14, FR-10dpa; 15, FR-mature green; 16 FR- mature red. FL, Flower; FR, Fruit; dba, day before anthesis; dpa, day post anthesis.

Part 9. The RT-PCR primers

Gene Name / Foward-Primer / Reverse-Primer / Size (bp)
SlCRCa / GGAATACCATGCAAGAAGTTG / GTTCTCACTTCTCAGCCAAG / 394
SlCRCb / GCAAGCTTCATCATCTACCT / GGTAAGACCCAAACACAAAC / 351
SlFAS (SlYABBY2a) / CCTTACAATCCTTTTGCTTC / TGTACTGTTGCCTTTGCAG / 384
SlINO / CTTCATCTCTTTGCTTCCTTC / GTTGCTATCTCTTGGGACCA / 384
SlYABBY1a / CCTCACAATCTTCTGGATGA / CAGTAAGGAGATACACCAATG / 404
SlYABBY1b / AGAGGACTAATGTGCGTCAG / GTAGTGCTAAAGCAAAAAGTG / 309
SlYABBY2a / CCTAGCTACATAACATGATG / GAATGGGAGAAAATCTGTGA / 405
SlYABBY5a / CACTTTGGACTCATGTTGGAG / GATCATGATGGAGAAACCTCT / 337
SlYABBY5b / CTCCTCATGATCAATACAAG / TGTTCTCACTAGCACCAAGT / 288
eIF4α / GCACAACAGATTGAGAAGGT / CAAGGTCTCGTAAAGATCACA / 471

Part 10. Phylogenetic tree of the YABBY CDSs among Arabidopsis, cucumber, grape, poplar, potato, and tomato. This tree is unrooted tree and is depicted by using the CDS of gene BT123811 in Picea sitchensis as an outgroup. Low bootstrap support (<50%) was not reported. Colors show species. Black, poplar; blue, Arabidopsis; green, cucumber; orange, potato; purple, grape; red, tomato.

Part 11. Ks value and estimated divergence time of YABBY2 subfamily genes. The lower numbers indicate Ks value among CDS of the YABBY2 subfamily genes and the upper numbers indicate the estimated divergence time (million years) among YABBY2 subfamily genes. The Ks values were calculated using K-estimator 6.0 with Kimura-2p as the multiple hits correcting method (Comeron 1999). Divergence time were estimated based on formula T =Ks/2r using the divergence rater= 6.5 × 10-9mutations per synonymous site per year (Gaut et al, 1996).

AtYABBY2 / Csa007814 / GSVIVT01022586001 / GSVIVT01037533001 / PGSC0003DMT400007731 / PGSC0003DMT400015197 / Potri.016G067300.1 / SlFAS (SlYABBY2b) / SlYABBY2a
AtYABBY2 / 70.0 / 93.8 / 77.6 / 71.6 / 63.7 / 110.0 / 72.4 / 67.7
Csa007814 / 1.0008 / 72.1 / 62.8 / 68.2 / 61.7 / 80.4 / 70.9 / 78.8
GSVIVT01022586001 / 1.2199 / 0.9372 / 60.9 / 114.8 / 117.5 / 55.0 / 116.9 / 117.5
GSVIVT01037533001 / 1.0083 / 0.8162 / 0.7923 / 76.2 / 84.8 / 66.9 / 75.9 / 83.3
PGSC0003DMT400007731 / 0.9311 / 0.8864 / 1.4922 / 0.9900 / 41.0 / 115.5 / 10.6 / 42.9
PGSC0003DMT400015197 / 0.8287 / 0.8020 / 1.5270 / 1.1029 / 0.5324 / 87.0 / 48.1 / 5.9
Potri.016G067300.1 / 1.4298 / 1.0457 / 0.7150 / 0.8695 / 1.5013 / 1.1304 / 98.8 / 86.9
SlFAS (SlYABBY2b) / 0.9414 / 0.9211 / 1.5197 / 0.9867 / 0.1374 / 0.6252 / 1.2842 / 50.7
SlYABBY2a / 0.8795 / 1.0243 / 1.5275 / 1.0831 / 0.5582 / 0.0768 / 1.1303 / 0.6595

Part 12. Predicted CDSs matching between the segments of SL2.40ch06 and SL2.40ch11 containing SlYABBY2a and FAS (SlYABBY2b) gene respectively. SL2.40ch06, 41879000..42121000; SL2.40ch11, 52133000..52357000. Dashed lines indicate significant homology matches between specific predicted CDSs. Numbers indicate specific predicted CDSs shown in Part 13 and Part 14.

Part 13. The predicted genes in SL2.40ch06:41879001..42121000

No. / Gene Locus / Gene transcript region / Gene functional description
1 / Solyc06g073730.1.1 / SL2.40ch06:41879453..41881270- / Ethylene insensitive 3 class transcription factor
2 / Solyc06g073740.2.1 / SL2.40ch06:41894196..41899465+ / Beta-D-glucosidase
3 / Solyc06g073750.2.1 / SL2.40ch06:41900636..41903467+ / Beta-D-glucosidase
4 / Solyc06g073760.2.1 / SL2.40ch06:41905608..41910016+ / Beta-D-glucosidase
5 / Solyc06g073770.1.1 / SL2.40ch06:41914409..41914882+ / Unknown Protein
6 / Solyc06g073780.2.1 / SL2.40ch06:41916196..41935528- / Structural maintenance of chromosomes protein 3
7 / Solyc06g073790.2.1 / SL2.40ch06:41938647..41940686- / 40S ribosomal protein S11
8 / Solyc06g073800.2.1 / SL2.40ch06:41942028..41944004- / 40S ribosomal protein S11
9 / Solyc06g073810.2.1 / SL2.40ch06:41946839..41953093- / Cellular nucleic acid-binding protein
10 / Solyc06g073820.1.1 / SL2.40ch06:41957492..41975936+ / Ubiquitin carboxyl-terminal hydrolase family protein expressed
11 / Solyc06g073830.1.1 / SL2.40ch06:41978680..41979234- / Calmodulin-like protein
12 / Solyc06g073840.2.1 / SL2.40ch06:41984106..41992683+ / Peptidyl-prolyl cis-trans isomerase D
13 / Solyc06g073850.1.1 / SL2.40ch06:41993432..41993875- / Unknown Protein
14 / Solyc06g073860.1.1 / SL2.40ch06:41998917..42000551+ / RING-H2 zinc finger protein (Fragment)
15 / Solyc06g073870.2.1 / SL2.40ch06:42002858..42005584- / DNA-directed RNA polymerase II subunit RPB4
16 / Solyc06g073880.2.1 / SL2.40ch06:42008183..42009623+ / RING-H2 zinc finger protein (Fragment)
17 / Solyc06g073890.2.1 / SL2.40ch06:42009395..42009879+ / Zinc finger RING-type
18 / Solyc06g073900.2.1 / SL2.40ch06:42011100..42014951- / Unknown Protein
19 / Solyc06g073910.2.1 / SL2.40ch06:42017256..42019960+ / Strictosidine synthase
20 / Solyc06g073920.2.1 / SL2.40ch06:42038601..42044688+ / SlYABBY2, YABBY-like transcription factor
21 / Solyc06g073930.2.1 / SL2.40ch06:42048669..42061206- / Ubiquitin carboxyl-terminal hydrolase
22 / Solyc06g073940.2.1 / SL2.40ch06:42068722..42070616- / Unknown Protein
23 / Solyc06g073950.2.1 / SL2.40ch06:42090222..42095898+ / DnaJ homolog subfamily C member 8
24 / Solyc06g073960.2.1 / SL2.40ch06:42095905..42107056- / Serine/threonine-protein phosphatase
25 / Solyc06g073970.1.1 / SL2.40ch06:42111866..42112939- / AT5G22070 protein (Fragment)
26 / Solyc06g073980.2.1 / SL2.40ch06:42117163..42120125+ / Unknown Protein

Part 14.The predicted genes in SL2.40ch11:52133001..52357000

No. / Gene Locus / Gene transcript region / Gene functional description
1 / Solyc11g071630.1.1 / SL2.40ch11:52133392..52134005 - / Sensor histidine kinase LuxQ
2 / Solyc11g071640.1.1 / SL2.40ch11:52141513..52144602+ / Beta-D-glucosidase
3 / Solyc11g071650.1.1 / SL2.40ch11:52146575..52151986+ / Beta-D-glucosidase
4 / Solyc11g071660.1.1 / SL2.40ch11:52154367..52155974- / NF-kappa-B-activating protein
5 / Solyc11g071670.1.1 / SL2.40ch11:52157728..52159230+ / Pentatricopeptide repeat-containing protein
6 / Solyc11g071680.1.1 / SL2.40ch11:52162376..52174213- / Serine/threonine protein kinase
7 / Solyc11g071690.1.1 / SL2.40ch11:52176483..52180827- / Cellular nucleic acid binding protein
8 / Solyc11g071700.1.1 / SL2.40ch11:52183260..52203855+ / Ubiquitin carboxyl-terminal hydrolase family protein expressed
9 / Solyc11g071710.1.1 / SL2.40ch11:52204800..52207250+ / DnaJ-like zinc-finger protein
10 / Solyc11g071720.1.1 / SL2.40ch11:52207795..52209357+ / Acetyl esterase
11 / Solyc11g071730.1.1 / SL2.40ch11:52210463..52220734+ / Kinesin-like protein
12 / Solyc11g071740.1.1 / SL2.40ch11:52221262..52221867- / Calmodulin-like protein
13 / Solyc11g071750.1.1 / SL2.40ch11:52223163..52223513- / Calmodulin-like protein
14 / Solyc11g071760.1.1 / SL2.40ch11:52225377..52225973- / Calmodulin-like protein
15 / Solyc11g071770.1.1 / SL2.40ch11:52229263..52232337- / Elongation factor Tu family protein
16 / Solyc11g071780.1.1 / SL2.40ch11:52235043..52235549- / Unknown Protein
17 / Solyc11g071790.1.1 / SL2.40ch11:52237076..52240112- / Unknown Protein
18 / Solyc11g071800.1.1 / SL2.40ch11:52240857..52244873- / Strictosidine synthase family protein
19 / Solyc11g071810.1.1 / SL2.40ch11:52249470..52255656- / SlFAS, SLYABBY2b, CRABS CLAW (Fragment)
20 / Solyc11g071820.1.1 / SL2.40ch11:52259863..52264687+ / Receptor-like kinase
21 / Solyc11g071830.1.1 / SL2.40ch11:52265280..52268287- / Chaperone protein dnaj
22 / Solyc11g071840.1.1 / SL2.40ch11:52274253..52280254+ / Calmodulin binding protein
23 / Solyc11g071850.1.1 / SL2.40ch11:52283425..52284495+ / AT5G22070 protein (Fragment)
24 / Solyc11g071860.1.1 / SL2.40ch11:52290338..52292029+ / Unknown Protein
25 / Solyc11g071870.1.1 / SL2.40ch11:52295316..52297648+ / Ubiquitin-conjugating enzyme
26 / Solyc11g071880.1.1 / SL2.40ch11:52298447..52301148+ / Receptor like kinase, RLK
27 / Solyc11g071890.1.1 / SL2.40ch11:52301894..52310067- / Outer envelope membrane protein
28 / Solyc11g071900.1.1 / SL2.40ch11:52311532..52311945+ / Self-incompatibility protein (Fragment)
29 / Solyc11g071910.1.1 / SL2.40ch11:52312893..52321825+ / GTP-binding family protein
30 / Solyc11g071920.1.1 / SL2.40ch11:52324269..52333682+ / Serine/threonine-protein phosphatase
31 / Solyc11g071930.1.1 / SL2.40ch11:52334894..52341200- / DnaJ homolog subfamily C member 8
32 / Solyc11g071940.1.1 / SL2.40ch11:52348262..52349008+ / Unknown Protein
33 / Solyc11g071950.1.1 / SL2.40ch11:52350625..52356685+ / Unknown Protein

Part 15. Dot plot of two DNA sequences, SL2.40ch06:41879001..42121000 containing SlYABBY2a and SL2.40ch11: 52133001..52357000 containing SlYABBY2b. Dot plot made by Advanced PipMaker (Schwartz et al. 2000).