Edin (Extensive Damage Induced Genes)Up-Regulated Under ALD Conditions, As Revealed By

Table S1

Edin (Extensive damage induced genes)up-regulated under ALD conditions, as revealed by microarray analysis

Gene Symbol / Fold-Change / group / p-value
tpx /// tpx / 2.17777 / antioxidant / 7.88E-07
ECs2447 /// Z2771 / 2.08858 / DNA repair / 0.00125386
ECs0103 /// mutT /// mutT / 2.42582 / DNA repair / 2.21E-05
ECs2447 /// Z2771 / 2.10503 / DNA repair / 0.000100559
ECs3096 /// napD / 2.70109 / Fe-S / 0.0113162
ECs3097 /// napF /// napF / 4.41383 / Fe-S / 0.00160036
ECs2295 /// ynfG /// ynfG /// Z2577 / 3.58102 / Fe-S / 0.000501086
napG /// napG / 3.01055 / Fe-S / 0.00111096
napH /// napH / 2.42019 / Fe-S / 0.00117725
ECs3390 /// iscX /// yfhJ / 2.22894 / Fe-S / 1.74E-06
nuoG /// nuoG / 2.20613 / Fe-S / 1.58E-05
ECs3751 /// ygfK /// Z4217 / 2.12538 / Fe-S / 0.0331141
napA /// napA / 2.10161 / Fe-S / 0.00104519
ECs0626 /// fepE /// fepE / 2.09178 / Fe-S / 0.000917026
ECs3657 /// sdaB /// sdaB /// sdaB / 3.22534 / Fe-S (pyruvate metabolism) / 4.81E-09
sdhB /// sdhB / 3.54918 / Fe-S, respiratory chain and TCA / 1.30E-05
ECs3568 /// hypF /// hypF / 2.81647 / hydrogenase / 0.000234594
hybD /// hybD / 2.24197 / hydrogenase / 0.00425838
ECs3575 /// hycG /// hycG /// hycG / 5.54702 / respiratory chain / 0.0001771
ECs4398 /// yhjA /// yhjA /// yhjA / 5.40432 / respiratory chain / 1.09E-07
ECs3574 /// hycH /// hycH /// hycH / 4.73439 / respiratory chain / 4.04E-05
ECs5055 /// nrfD /// nrfD /// nrfD / 4.27424 / respiratory chain / 1.79E-06
glpA /// glpA / 2.1704 / respiratory chain (?) / 0.000610997
sdhA /// sdhA / 2.48861 / Respiratory chain and TCA / 1.62E-05
atpC /// atpC / 3.26728 / respiratory chain / 2.92E-07
cho /// ydjQ / 2.98502 / SOS / 9.98E-10
ECs2434 /// ydjM /// ydjM /// Z2757 / 2.8712 / SOS / 0.0016338
uvrB / 2.42319 / SOS / 1.44E-05
recR /// recR / 2.21785 / SOS / 2.78E-06
uvrA / 2.19548 / SOS / 0.000493544
ruvC /// ruvC / 2.17364 / SOS / 4.16E-06
ECs0063 /// hepA /// rapA /// Z0067 / 2.13052 / SOS / 2.96E-06
rdgC /// rdgC / 2.11923 / SOS / 1.52E-05
ECs0754 /// sucD /// sucD / 3.47224 / TCA / 9.08E-09
sucC /// sucC / 2.44209 / TCA / 9.56E-08
sucA /// sucA / 2.41953 / TCA / 4.07E-06
ECs0752 /// sucB /// sucB / 2.14158 / TCA / 1.80E-09
aceA /// ECs4933 / 2.20631 / TCA and glyoxylate bypass / 0.000499262
Gene Symbol / Fold-Change / group / p-value
bamE /// c3139 /// ECs3479 /// smpA / 4.03412 / stress response / 1.43E-07
yjeP / 3.54343 / stress response / 5.44E-05
rybB / 3.80482 / stress response / 2.84E-07
ECs5138 /// yjeP /// yjeP / 2.99002 / stress response / 9.29E-05
ECs0410 /// frmB /// yaiM /// yaiM / 2.82031 / stress response / 1.48E-06
ECs3557 /// ygaD /// ygaD (nrdF) / 2.60747 / stress response / 2.01E-11
ECs2137 /// marR /// marR / 2.5026 / stress response (antibiotics) / 2.18E-08
ECs2138 /// marA /// marA / 2.25382 / stress response (antibiotics) / 1.61E-08
ECs0626 /// fepE /// fepE / 2.11831 / Cell structure / 0.00313069
ECs1427 /// mdoH /// opgH / 2.16728 / Cell structure (membrane) / 1.15E-05
yadN / 2.95766 / Cell structure (pilus) / 0.00512951
yadL / 2.90881 / Cell structure (pilus) / 5.54E-08
ECs3114 /// gyrA /// gyrA / 2.89162 / DNA replication / 1.02E-07
hsdM / 2.11198 / DNA restriction / 8.81E-05
ECs5141 /// orn /// yjeR / 2.1629 / exoribonuclease / 1.20E-08
ECs2531 /// yebN /// yebN /// Z2864 / 6.05638 / inner membrane protein / 1.55E-06
ECs1045 /// yccF /// yccF / 2.72548 / inner membrane protein / 6.75E-09
ECs0865 /// ybhM /// ybhM / 2.65138 / inner membrane protein / 1.07E-05
ECs3475 /// yfjD /// yfjD / 2.59186 / inner membrane protein / 1.78E-07
yciQ / 2.16146 / inner membrane protein / 0.000181722
ECs3529 /// ygaP /// ygaP / 2.12892 / inner membrane protein / 2.99E-05
pagP /// pagP / 2.09226 / inner membrane protein / 6.19E-08
ECs4732 /// hemY /// hemY / 2.33299 / inner membrane protein / 4.61E-07
ECs1044 /// yccS /// yccS /// Z1311 / 4.23352 / inner membrane protein / 3.61E-05
araA /// ECs0066 / 3.08372 / metabolism / 2.20E-07
ECs4466 /// yiaY /// yiaY / 2.0203 / metabolism / 0.000219499
caiE /// caiE /// ECs0038 / 2.60428 / metabolism / 0.000491319
ECs3700 /// kduI /// kduI / 2.27962 / metabolism / 3.57E-06
cysG /// cysG / 2.23979 / metabolism / 1.96E-05
caiD /// ECs0039 / 2.23864 / metabolism / 0.000139353
ECs3038 /// yeiT /// Z3401 (preT) / 2.09123 / metabolism / 0.000193775
ECs2345 /// pdxY / 3.48917 / metabolism / 1.68E-06
ECs2296 /// ynfH /// ynfH /// Z2579 / 2.67852 / metabolism / 7.73E-06
ECs3388 /// sseB /// sseB / 2.52374 / metabolism / 7.69E-09
glyA / 2.36269 / metabolism / 0.00266129
arpA / 2.18069 / metabolism / 0.0388248
Gene Symbol / Fold-Change / group / p-value
ansB /// ansB / 2.31247 / metabolism (amino acids) / 4.65E-08
argC /// argC / 2.25494 / metabolism (amino acids) / 1.08E-06
ECs0079 /// leuL / 3.33388 / metabolism (amino acids) / 4.13E-06
ECs4867 /// metJ /// metJ / 2.13751 / metabolism (amino acids) / 1.03E-06
ECs5168 /// ulaG /// yjfR / 2.81218 / metabolism (carbon) / 1.02E-08
ECs3561 /// srlD / 2.79191 / metabolism (carbon) / 1.67E-05
araB /// araB /// ECs0067 / 2.61586 / metabolism (carbon) / 2.55E-05
ECs5216 /// treC /// treC / 2.35355 / metabolism (carbon) / 1.74E-05
agp /// c1138 /// ECs1158 / 7.93364 / metabolism (glucose) / 5.13E-06
arnC /// c2796 /// ECs3142 /// Z3512 / 2.09908 / metabolism (lipids) / 2.42E-07
pagP /// pagP / 2.07777 / metabolism (lipopolysacharide) / 3.56E-05
deoD /// deoD / 2.20152 / metabolism (nucleotides) / 1.17E-06
ECs3038 /// yeiT /// Z3401 (preT) / 2.11695 / metabolism (nucleotides) / 3.98E-05
psd / 2.21051 / metabolism (phospholipids) / 7.97E-07
ybiW /// Z1046m / 3.34902 / metabolism (pyruvate ) / 8.22E-06
ECs2560 /// eda /// eda / 2.67731 / metabolism (pyruvate ) / 3.95E-11
ybiW /// ybiW /// Z1046m / 2.40966 / metabolism (pyruvate ) / 2.27E-06
c0909 /// ECs0902 /// ybiY /// ybiY / 2.28016 / metabolism (pyruvate ) / 2.78E-07
aceF /// aceF / 2.10233 / metabolism (pyruvate ) / 5.40E-06
mltB /// mltB / 2.28886 / peptidoglycan / 2.80E-09
gltF / 2.16657 / periplasmic protein / 0.000833743
ECs3399 /// suhB / 2.06423 / posttranscriptional regulation / 2.41E-06
elaD / 3.01724 / protease / 0.000975576
ECs2555 /// ptrB /// ptrB / 2.18118 / protease / 0.00210942
c2255 /// ECs2555 /// ptrB /// ptrB / 2.15488 / protease / 2.21E-06
ECs1844 /// sohB /// sohB / 2.00089 / protease / 6.61E-09
srlA /// srlA_1 / 2.93032 / PTS / 0.00940941
srlA /// srlA /// srlA_2 / 2.76402 / PTS / 1.79E-05
srlE /// srlE /// srlE_2 (gutA) / 2.67238 / PTS / 0.00046854
ECs5217 /// treB /// treB / 2.09244 / PTS / 0.000369506
ECs0062 /// rluA /// yabO / 2.99201 / RNA modification / 7.63E-08
dusB /// ECs4132 /// yhdG / 2.01308 / RNA modification / 5.47E-06
ECs4640 /// yidC /// yidC / 2.46451 / secretion / 2.12E-06
sibA / 2.15418 / small RNA / 0.000359756
Gene Symbol / Fold-Change / group / p-value
ECs0796 /// ybhD /// ybhD /// ybhD / 2.86902 / Trancription (TF) / 2.63E-08
ECs1492 /// mfd / 2.20971 / transcription repair / 1.98E-06
rplS /// rplS / 2.53103 / translation / 1.22E-06
gltX / 2.02723 / translation / 1.96E-06
ECs3956 /// ygjH /// ygjH / 2.26324 / translation / 0.00423248
ECs2369 /// ydhC /// ydhC / 8.22831 / transporter / 2.02E-07
ECs3656 /// sdaC /// sdaC / 4.81724 / transporter / 8.37E-06
ECs3661 /// fucP / 3.06017 / transporter / 0.000342774
nhaA /// nhaA / 2.2538 / transporter / 0.000398818
frlA /// frlA / 2.18098 / transporter / 0.00340959
oppB /// oppB / 2.1146 / transporter / 3.05E-05
dcuC /// dcuC / 2.06185 / transporter / 0.00367405
c2257 / 4.41971 / unknown / 9.64E-06
c5221 / 4.17456 / unknown / 1.49E-05
c3251 /// Z4000 / 3.1979 / unknown / 2.58E-05
c0670 / 3.0706 / unknown / 2.49E-05
ECs0923 /// ybjH /// ybjH / 2.89568 / unknown / 2.76E-06
c4074 / 2.89165 / unknown / 0.000278578
c4081 / 2.88767 / unknown / 0.00186146
c4078 / 2.87102 / unknown / 0.00041197
ECs3052 /// yeiI /// yeiI / 2.85991 / unknown / 1.13E-09
c0693 / 2.65626 / unknown / 0.000339583
c4084 / 2.64995 / unknown / 0.00187191
c4088 / 2.64699 / unknown / 0.00163785
ECs2535 /// yebO /// yebO /// Z2871 / 2.57275 / unknown / 3.56E-05
c3943 / 2.54524 / unknown / 3.18E-05
c0697 /// ECs0648 /// Z0753 / 2.47357 / unknown / 1.84E-09
c2723 / 2.45867 / unknown / 8.70E-05
c5246 / 2.44865 / unknown / 0.00011916
ECs3519 /// Z3955 / 2.44042 / Unknown / 0.00107777
c1363 / 2.43256 / unknown / 0.000461647
ECs3888 /// Z4357 / 2.39887 / unknown / 0.000147242
c3363 / 2.39003 / unknown / 0.00013198
c4090 / 2.31295 / unknown / 0.000536212
c3343 / 2.28596 / unknown / 0.000374746
yfaA /// yfaA / 2.28195 / unknown / 0.000553634
c4007 / 2.28186 / unknown / 0.000239613
c4115 / 2.23156 / unknown / 0.000113137
ECs3748 /// yqeB /// yqeB /// Z4214 / 2.23142 / unknown / 8.04E-06
c1112 / 2.22383 / unknown / 9.42E-06
c4938 / 2.19448 / unknown / 4.03E-06
c2541 / 2.16698 / unknown / 5.65E-06
c4086 / 2.15439 / unknown / 0.0159663
c0590 / 2.12254 / unknown / 0.000611553
c4661 / 2.09935 / unknown / 0.00185854
c2944 /// ECs5495 /// ypeB /// Z3676 / 2.09536 / Unknown / 9.35E-05
c3867 /// ECs3990 /// yhaM /// Z4462 / 2.06721 / unknown / 1.91E-05
c4067 / 2.0631 / unknown / 0.000908126
Gene Symbol / Fold-Change / group / p-value
c4720 / 2.04901 / unknown / 0.0249059
ybiB /// ybiB / 4.14501 / unknown / 4.56E-10
yfjI / 2.19253 / unknown / 3.09E-05
yfjJ / 3.28157 / unknown / 0.00029263
ECs1839 /// yciO /// yciO / 2.01247 / unknown / 4.65E-08
hrpB / 2.01921 / unknown / 1.50E-06