Table 3. CDSs of p42d with predicted RpoN promoters and NifA binding sites

ID / GENE NAME / FUNCTIONAL CLASS / TU / RpoN / UAS NifA
RESP0002F / nodA / Nodulation / nodA / 7.1
RESP0005F / nifHa / Nitrogen fixation / nifHDK / 9.78 / 12.3
RESP0012F / yp003 / Hypothetical conserved / yp003 / 12.37 / 10.76
RESP0018F / fixO / Nitrogen fixation / fixNOQP / 6.56
RESP0048R / yp006 / Hypothetical conserved / yp006 / 10.45
RESP0051R / yh009 / Hypothetical / hemN2yh009 / 8.92
RESP0054R / nifHc / Nitrogen fixation / nifHc / 9.78 / 9.51
RESP0055R / nifQ / Nitrogen fixation / nifQ / 9.17
RESP0062F / cpxP1pseudogene / Electron transfer / - / 10.93
RESP0068F / yp009 pseudogene / Enzymatic functions / - / 8.52
RESP0069F / yp010 / Hypothetical conserved / yp010yp011yp012 / 8.38 / 8.94
RESP0075F / yi06-III / Integration/Recombination / yi06-Iyi06-IIyi06-III / 6.65
RESP0088R / nifB / Nitrogen fixation / nifBfdxNnifZ / 11.11
RESP0093R / fixA / Nitrogen fixation / fixABCX / 11.48 / 8.84
RESP0097R / hesB / Enzymatic functions / hesB / 11.1 / 8.5
RESP0100R / yp014 / Enzymatic functions / yp014 / 13.15
RESP0102F / cpxA5 / Electron transfer / cpxA5 / 8.95 / 11.57
RESP0107F / yp017 / Hypothetical conserved / yp017 / 7.56
RESP0109R / yh017 / Hypothetical / yh017 / 8.5
RESP0115F / nifHb / Nitrogen fixation / nifHDK / 9.78 / 12.3
RESP0131R / yp021 / Hypothetical conserved / yp021 / 12.37 / 10.76
RESP0146F / yp028 / Hypothetical conserved / yp028 / 6.42
RESP0175F / yp038 / Hypothetical conserved / yp038 / 8.55
RESP0184R / xylB2 / Enzymatic functions / xylB2yp043yp042 / 6.77
RESP0192R / yi14a-II / Integration/Recombination / yi14a-IIyi14a-III / 7.72
RESP0199R / yp047 / Transport / yp047aatC / 6.69
RESP0201R / pcaC1 / Enzymatic functions / pcaC1yp049 / 6.37
RESP0240R / melA / Enzymatic functions / melAyh038 / 12.22
RESP0251R / yh043 / Hypothetical / yh043 / 7.6
RESP0281F / yp076 / Enzymatic functions / yp076yh051 / 9.76
RESP0306R / yp092 / Hypothetical conserved / yp093yp092 / 10.54
RESP0329R / yh064 / Hypothetical / yh064yh065 / 8.91
RESP0333R / yp099 / Hypothetical conserved / yp099 / 12.37 / 10.76
RESP0334F / yp100 / Transport / yp100 / 10.75
RESP0337F / yp101 / Hypothetical conserved / yp101 / 9.76
RESP0341R / yp104 / Transport / yp104 / 10.86 / 11.27
RESP0360R / yh070 / Hypothetical / yh070 / 11.73