S Table1sequence Information of the Primers Used for SRAP Analysis

S_Table1Sequence information of the primers used for SRAP analysis

Forward primers (5′-3′) / Reverse primers (5′-3′)
ME4 TGAGTCCAAACCGGACC / EM1 GACTGCGTACGAATTAAT
ME5 TGAGTCCAAACCGGAAG / EM3 GACTGCGTACGAATTGAC
ME8 TGAGTCCTTTCCGGTGC / EM6 GACTGCGTACGAATTGCA
ME10a TGAGTCCAAACCGGCAT / EM18a GACTGCGTACGAATTCCT
ME11a TGAGTCCAAACCGGTCT / OD3 CCAAACCTAAAACCAGGA
DC1 TAAACAATGGCTACTCAAG / SA4 TTCTTCTTCCTGGACACAAA
PM8 CTGGTGAATGCCGCTCT / GA8 GGCTTGAACGAGTGACTGA
Me6 TGAGTCCAAACCGGACA / Em8 GACTGCGTACGAATTCAC
Me7 TGAGTCCAAACCGGACG / Em9 GACTGCGTACGAATTCGA
Me8 TGAGTCCAAACCGGACT / Em10 GACTGCGTACGAATTCAT
Me9 TGAGTCCAAACCGGAGG / Em11 GACTGCGTACGAATTCCA
Me10 TGAGTCCAAACCGGAAA / Em12 GACTGCGTACGAATTCTC
Me11 TGAGTCCAAACCGGAAC / Em14 GACTGCGTACGAATTCTT
Me12 TGAGTCCAAACCGGAGA / Em16 GACTGCGTACGAATTGTA

S_Table 2Identification of differentially expressed fragments showing significant similarities to known gene sequences based on BLAST results

Sequence no. / Length (bp) / Accession no. / Description / species / E value
F1-1-117-2 / 212 / YP_258113.1 / iron(III) dicitrate transport protein fecA / Pseudomonas fluorescens / 3e-24
F1-2-144 / 115 / XP_002524357.1 / 60S ribosomal protein L10 / Ricinus communis / 3e-07
F1-1-162 / 336 / AAO25581.1 / cellulose synthase / Populus tremuloides / 5e-39
F1-1-174 / 327 / XP_002528639.1 / pyruvate kinase / Ricinus communis / 9e-22
F1-2-175-2 / 350 / XP_002515932.1 / zinc finger protein / Ricinus communis / 3e-32
F1-1-176-2 / 237 / XP_002883003.1 / GDSL-motif lipase/hydrolase family protein / Ricinus communis / 8e-29
L1-2-127-1 / 858 / XP_002871357.1 / zinc finger family protein / Arabidopsis lyrata subsp. lyrata / 3e-75
L1-2-127-2 / 371 / XP_002513706.1 / alpha/beta hydrolase / Ricinus communis / 6e-23
L1-2-127-3 / 215 / XP_002517960.1 / protein phosphatase-2c / Ricinus communis / 7e-19
L1-2-134-2 / 265 / AAW31667.1 / ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit / Ammopiptanthus mongolicus / 7e-33
L1-2-135-2 / 526 / NP_191425.1 / 60S ribosomal protein-related / Arabidopsis thaliana / 1e-39
L1-1-144-1 / 357 / XP_002524357.1 / 60S ribosomal protein L10 / Ricinus communis / 2e-50
L1-1-144-3 / 357 / XP_002524357.1 / 60S ribosomal protein L10 / Ricinus communis / 2e-50
L1-1-144-6 / 356 / XP_002524357.1 / 60S ribosomal protein L10 / Ricinus communis / 2e-50
L1-2-144-2 / 358 / XP_002524357.1 / 60S ribosomal protein L10 / Ricinus communis / 2e-50
L1-1-157-1 / 289 / XP_002871581.1 / structural constituent of ribosome / Arabidopsis lyrata subsp. lyrata / 2e-06
L1-1-157-2 / 153 / ZP_06191046.1 / transcriptional regulatory protein / Serratia odorifera 4Rx13 / 1e-15
L1-2-161 / 992 / XP_002319923.1 / glycosyltransferase, CAZy family GT8 / Populus trichocarpa / 4e-127
L1-2-164 / 180 / ADN33942.1 / chloroplast outer envelope protein 34 / Cucumis melo subsp. melo / 1e-18
L1-2-171 / 1392 / ADC45395.1 / heat shock protein HSP90-1 / Glycine max / 2e-129
L1-2-171-1 / 1393 / ADC45395.1 / heat shock protein HSP90-1 / Glycine max / 2e-129
L1-2-171-2 / 692 / XP_002530674.1 / endomembrane protein emp70 / Ricinus communis / 1e-105
L1-2-172-1 / 719 / XP_002530276.1 / Ubiquitin carboxyl-terminal hydrolasee / Ricinus communis / 1e-81
L1-2-172-2 / 486 / XP_002528193.1 / ATP binding protein, putative / Ricinus communis / 4e-09
L1-2-177 / 571 / XP_002526489.1 / eukaryotic translation initiation factor 4g / Ricinus communis / 2e-17
L2-2-162 / 965 / AAK17011.2 / polyprotein / Papaya ringspot virus W / 0.0
L2-2-165 / 867 / NP_564761.1 / ATB2; oxidoreductase / Arabidopsis thaliana / 3e-131
L2-2-172-2 / 486 / XP_002528193.1 / ATP binding protein / Ricinus communis / 4e-09
L2-2-212 / 629 / AAK84952.2 / putative carboxyl-terminal proteinase / Gossypium hirsutum / 2e-38
L2-2-221-2 / 751 / NP_195736.1 / e-cadherin binding protein-related / Arabidopsis thaliana / 3e-07
L2-2-222-1 / 1004 / XP_002510559.1 / calcium lipid binding protein / Ricinus communis / 2e-158
L2-2-222-2 / 429 / AAW31667.1 / ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit / Ammopiptanthus mongolicus / 7e-33
L2-2-224-1 / 888 / NP_182113.2 / Rho guanyl-nucleotide exchange factor / Arabidopsis thaliana / 2e-68
L2-2-224-2 / 731 / XP_002515097.1 / dicer-1 / Ricinus communis / 1e-103
L2-2-225 / 542 / ABF99475.1 / expressed protein / Oryza sativa Japonica Group / 2e-08
L2-2-227-1 / 1082 / XP_002512969.1 / coatomer alpha subunit / Ricinus communis / 0.0
L2-2-227-2 / 662 / BAD12492.1 / mitogen-activated kinase kinase kinase alpha / Lotus japonicus / 2e-77
L2-2-232-1 / 856 / XP_002530296.1 / beta-galactosidase / Ricinus communis / 8e-150
L2-2-232-2 / 429 / AAW31667.1 / ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit / Ammopiptanthus mongolicus / 7e-33
L2-2-235 / 708 / NP_181079.1 / ubiquitin family protein / Arabidopsis thaliana / 4e-06
L2-2-236-1 / 1168 / AAL99045.1 / D1 protease-like protein precursor / Nicotiana plumbaginifolia / 1e-26
L2-2-236-2 / 608 / AAZ94659.1 / ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit / Cucumis sativus / 8e-96
L2-2-237-1 / 932 / XP_002307090.1 / peroxisomal membrane ABC transporter family, PMP family / Populus trichocarpa / 2e-62
L2-2-237-2 / 933 / XP_002307090.1 / peroxisomal membrane ABC transporter family, PMP family / Populus trichocarpa / 2e-62
L2-2-237-3 / 662 / BAD12492.1 / mitogen-activated kinase kinase kinase alpha / Lotus japonicus / 5e-78
L2-1-241 / 241 / XP_002519477.1 / cytochrome P450 / Ricinus communis / 7e-30
L2-1-243 / 242 / XP_002519477.1 / cytochrome P450 / Ricinus communis / 7e-30
L2-2-245 / 549 / ABF99475.1 / expressed protein / Oryza sativa Japonica Group / 3e-11
L2-2-246-1 / 600 / ZP_03104354.1 / SocE [Bacillus cereus W / 3e-17
L2-2-246-3 / 158 / XP_002514727.1 / exonuclease / Ricinus communis / 3e-08
L2-2-247 / 934 / XP_002307090.1 / peroxisomal membrane ABC transporter family, PMP family / Populus trichocarpa / 1e-61
L2-2-251-1 / 1209 / XP_002280841.1 / transducin family protein / WD-40 repeat family protein / Vitis vinifera / 2e-169
L2-2-251-2 / 887 / AAD38145.1 / porin / Prunus armeniaca / 6e-120
L2-2-254 / 844 / AAQ84324.1 / fiber protein Fb32 / Gossypium barbadense / 4e-10
L2-2-255-2 / 533 / XP_002519849.1 / Transcription factor IWS1 / Ricinus communis / 3e-31
L2-2-256 / 355 / NP_563881.1 / endomembrane protein 70 / Arabidopsis thaliana / 2e-55
L2-2-257-1 / 583 / XP_002513509.1 / nucleolar GTP-binding protein / Ricinus communis / 3e-18
L2-2-261-1 / 468 / XP_002511435.1 / ubiquitin-conjugating enzyme h / Ricinus communis / 5e-73
L2-2-263 / 601 / XP_002527822.1 / Squamous cell carcinoma antigen recognized by T-cells / Ricinus communis / 9e-54
L2-2-264 / 720 / AAY84644.1 / gag protein / Human immunodeficiency virus 1 / 2e-51
L2-1-272 / 324 / AAW31667.1 / ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit / Ammopiptanthus mongolicus / 1e-33
L2-1-272-1 / 323 / AAW31667.1 / ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit / Ammopiptanthus mongolicus / 1e-33
L2-2-272-1 / 429 / AAW31667.1 / ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit / Ammopiptanthus mongolicus / 1e-33
L2-1-274 / 227 / NP_194222.1 / protein transport protein SEC61 gamma subunit / Arabidopsis thaliana / 2e-18
L2-2-274 / 870 / AAB96976.1 / NBS-LRR type resistance protein / Hordeum vulgare subsp. vulgare / 2e-35
L3-1-311 / 503 / AAM66138.1 / allene oxide synthase / Cucumis melo / 1e-69
L3-1-312-1 / 882 / XP_002517960.1 / protein phosphatase-2c / Ricinus communis / 3e-145
L3-1-312-2 / 429 / AAW31667.1 / ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit / Ammopiptanthus mongolicus / 2e-33
L3-2-313 / 134 / XP_002518724.1 / UDP-glucosyltransferase / Ricinus communis / 1e-09
L3-1-314 / 900 / XP_002527362.1 / E3 ubiquitin protein ligase upl2 / Ricinus communis / 7e-84
L3-1-315 / 342 / XP_002514176.1 / asparagine--tRNA ligase / Ricinus communis / 5e-38

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