Supplementary Table S4.Gene ontology(GO) enrichments only for Nstarvation after 1h treatment.
GO ID / Term / Annotated / Significant / classic / weightUp-regulated
root
GO:0045449 / regulation of transcription / 984 / 33 / 5.40E-07 / 5.40E-07
GO:0009719 / response to endogenous stimulus / 2218 / 52 / 1.20E-05 / 1.20E-05
GO:0001539 / ciliary or flagellar motility / 12 / 3 / 0.00047 / 0.00047
GO:0009628 / response to abiotic stimulus / 1245 / 30 / 0.0009 / 0.0009
GO:0007165 / signal transduction / 1842 / 39 / 0.0017 / 0.00233
GO:0006950 / response to stress / 1677 / 34 / 0.00713 / 0.00713
GO:0008219 / cell death / 369 / 10 / 0.02577 / 0.00958
GO:0006865 / amino acid transport / 72 / 4 / 0.01547 / 0.01547
GO:0006265 / DNA topological change / 19 / 2 / 0.02599 / 0.02599
GO:0006350 / transcription / 1479 / 44 / 1.30E-07 / 0.02616
GO:0006597 / spermine biosynthetic process / 3 / 1 / 0.03944 / 0.03944
GO:0006470 / protein amino acid dephosphorylation / 70 / 3 / 0.06652 / 0.06652
GO:0006887 / exocytosis / 34 / 2 / 0.07497 / 0.07497
GO:0008295 / spermidine biosynthetic process / 6 / 1 / 0.07733 / 0.07733
GO:0009607 / response to biotic stimulus / 1142 / 21 / 0.07969 / 0.07969
GO:0006075 / 1,3-beta-glucan biosynthetic process / 7 / 1 / 0.08962 / 0.08962
GO:0007154 / cell communication / 1880 / 39 / 0.00248 / 0.49268
GO:0032774 / RNA biosynthetic process / 663 / 23 / 2.20E-05 / 0.49981
GO:0032501 / multicellular organismal process / 792 / 25 / 4.50E-05 / 0.50465
GO:0000003 / reproduction / 520 / 12 / 0.04496 / 0.51694
GO:0010468 / regulation of gene expression / 1031 / 34 / 5.20E-07 / 0.53784
GO:0016051 / carbohydrate biosynthetic process / 118 / 4 / 0.0727 / 0.56015
GO:0042221 / response to chemical stimulus / 210 / 6 / 0.06184 / 0.62264
GO:0050896 / response to stimulus / 3777 / 70 / 0.00059 / 0.79346
GO:0065007 / biological regulation / 1374 / 36 / 4.40E-05 / 0.93769
GO:0043283 / biopolymer metabolic process / 3508 / 57 / 0.04411 / 0.98197
GO:0010467 / gene expression / 2214 / 47 / 0.00044 / 0.99662
GO:0006139 / nucleobase, nucleoside, nucleotide and n... / 2649 / 52 / 0.00131 / 0.99763
GO:0006074 / 1,3-beta-glucan metabolic process / 7 / 1 / 0.08962 / 1
GO:0006351 / transcription, DNA-dependent / 662 / 22 / 6.40E-05 / 1
GO:0006355 / regulation of transcription, DNA-depende... / 640 / 22 / 3.80E-05 / 1
GO:0006928 / cell motility / 12 / 3 / 0.00047 / 1
GO:0006979 / response to oxidative stress / 143 / 5 / 0.04228 / 1
GO:0008215 / spermine metabolic process / 3 / 1 / 0.03944 / 1
GO:0008216 / spermidine metabolic process / 6 / 1 / 0.07733 / 1
GO:0009272 / fungal-type cell wall biogenesis / 7 / 1 / 0.08962 / 1
GO:0015837 / amine transport / 72 / 4 / 0.01547 / 1
GO:0015849 / organic acid transport / 74 / 4 / 0.01695 / 1
GO:0016070 / RNA metabolic process / 914 / 23 / 0.00223 / 1
GO:0016265 / death / 369 / 10 / 0.02577 / 1
GO:0016311 / dephosphorylation / 70 / 3 / 0.06652 / 1
GO:0016481 / negative regulation of transcription / 7 / 1 / 0.08962 / 1
GO:0019219 / regulation of nucleobase, nucleoside, nu... / 986 / 33 / 5.70E-07 / 1
GO:0019222 / regulation of metabolic process / 1015 / 33 / 1.10E-06 / 1
GO:0022414 / reproductive process / 383 / 10 / 0.03214 / 1
GO:0031323 / regulation of cellular metabolic process / 1001 / 33 / 8.00E-07 / 1
GO:0031505 / fungal-type cell wall organization and b... / 7 / 1 / 0.08962 / 1
GO:0045934 / negative regulation of nucleobase, nucle... / 7 / 1 / 0.08962 / 1
GO:0046942 / carboxylic acid transport / 74 / 4 / 0.01695 / 1
GO:0048468 / cell development / 369 / 10 / 0.02577 / 1
GO:0050789 / regulation of biological process / 1081 / 34 / 1.50E-06 / 1
GO:0050794 / regulation of cellular process / 1028 / 33 / 1.50E-06 / 1
GO:0051252 / regulation of RNA metabolic process / 640 / 22 / 3.80E-05 / 1
GO:0051273 / beta-glucan metabolic process / 7 / 1 / 0.08962 / 1
GO:0051274 / beta-glucan biosynthetic process / 7 / 1 / 0.08962 / 1
GO:0051278 / fungal-type cell wall polysaccharide bio... / 7 / 1 / 0.08962 / 1
GO:0051674 / localization of cell / 12 / 3 / 0.00047 / 1
shoot
GO:0045449 / regulation of transcription / 984 / 31 / 4.40E-08 / 4.40E-08
GO:0007154 / cell communication / 1880 / 41 / 4.60E-06 / 4.60E-06
GO:0001539 / ciliary or flagellar motility / 12 / 4 / 6.20E-06 / 6.20E-06
GO:0007275 / multicellular organismal development / 777 / 21 / 9.30E-05 / 0.00013
GO:0006470 / protein amino acid dephosphorylation / 70 / 4 / 0.00709 / 0.00709
GO:0016042 / lipid catabolic process / 14 / 2 / 0.00984 / 0.00984
GO:0005992 / trehalose biosynthetic process / 18 / 2 / 0.01609 / 0.01609
GO:0006350 / transcription / 1479 / 40 / 2.00E-08 / 0.03341
GO:0006559 / L-phenylalanine catabolic process / 8 / 1 / 0.08396 / 0.08396
GO:0006091 / generation of precursor metabolites and ... / 893 / 15 / 0.06133 / 0.08546
GO:0051252 / regulation of RNA metabolic process / 640 / 17 / 0.00056 / 0.31196
GO:0032501 / multicellular organismal process / 792 / 21 / 0.00012 / 0.43569
GO:0007165 / signal transduction / 1842 / 40 / 7.00E-06 / 0.55709
GO:0006139 / nucleobase, nucleoside, nucleotide and n... / 2649 / 49 / 3.80E-05 / 0.90423
GO:0008152 / metabolic process / 8953 / 106 / 0.04081 / 0.95597
GO:0044238 / primary metabolic process / 7502 / 95 / 0.00724 / 0.97207
GO:0043283 / biopolymer metabolic process / 3508 / 47 / 0.05551 / 0.97926
GO:0044237 / cellular metabolic process / 6906 / 88 / 0.01176 / 0.99119
GO:0005984 / disaccharide metabolic process / 27 / 2 / 0.03463 / 1
GO:0005991 / trehalose metabolic process / 19 / 2 / 0.01785 / 1
GO:0006351 / transcription, DNA-dependent / 662 / 17 / 0.00082 / 1
GO:0006355 / regulation of transcription, DNA-depende... / 640 / 17 / 0.00056 / 1
GO:0006928 / cell motility / 12 / 4 / 6.20E-06 / 1
GO:0009074 / aromatic amino acid family catabolic pro... / 8 / 1 / 0.08396 / 1
GO:0010467 / gene expression / 2214 / 40 / 0.00048 / 1
GO:0010468 / regulation of gene expression / 1031 / 31 / 1.30E-07 / 1
GO:0016070 / RNA metabolic process / 914 / 17 / 0.02059 / 1
GO:0016311 / dephosphorylation / 70 / 4 / 0.00709 / 1
GO:0016481 / negative regulation of transcription / 7 / 1 / 0.07386 / 1
GO:0019219 / regulation of nucleobase, nucleoside, nu... / 986 / 31 / 4.60E-08 / 1
GO:0019222 / regulation of metabolic process / 1015 / 31 / 9.00E-08 / 1
GO:0019439 / aromatic compound catabolic process / 8 / 1 / 0.08396 / 1
GO:0031323 / regulation of cellular metabolic process / 1001 / 31 / 6.60E-08 / 1
GO:0032502 / developmental process / 1286 / 24 / 0.00574 / 1
GO:0032774 / RNA biosynthetic process / 663 / 17 / 0.00084 / 1
GO:0045934 / negative regulation of nucleobase, nucle... / 7 / 1 / 0.07386 / 1
GO:0046351 / disaccharide biosynthetic process / 18 / 2 / 0.01609 / 1
GO:0050789 / regulation of biological process / 1081 / 31 / 3.70E-07 / 1
GO:0050794 / regulation of cellular process / 1028 / 31 / 1.20E-07 / 1
GO:0051674 / localization of cell / 12 / 4 / 6.20E-06 / 1
GO:0065007 / biological regulation / 1374 / 35 / 9.10E-07 / 1
Down-regulated
root
GO:0017000 / antibiotic biosynthetic process / 35 / 5 / 5.90E-05 / 5.90E-05
GO:0019748 / secondary metabolic process / 511 / 15 / 0.00131 / 0.0013
GO:0006118 / electron transport / 740 / 18 / 0.00354 / 0.0035
GO:0009991 / response to extracellular stimulus / 90 / 5 / 0.00468 / 0.0047
GO:0019953 / sexual reproduction / 13 / 2 / 0.01041 / 0.0104
GO:0006519 / amino acid and derivative metabolic proc... / 776 / 17 / 0.01249 / 0.0144
GO:0005975 / carbohydrate metabolic process / 823 / 16 / 0.04041 / 0.0183
GO:0016049 / cell growth / 57 / 3 / 0.03163 / 0.0316
GO:0016068 / type I hypersensitivity / 4 / 1 / 0.04757 / 0.0476
GO:0042742 / defense response to bacterium / 4 / 1 / 0.04757 / 0.0476
GO:0050832 / defense response to fungus / 4 / 1 / 0.04757 / 0.0476
GO:0009791 / post-embryonic development / 410 / 9 / 0.06118 / 0.0612
GO:0016567 / protein ubiquitination / 419 / 9 / 0.06815 / 0.0682
GO:0006662 / glycerol ether metabolic process / 6 / 1 / 0.07051 / 0.0705
GO:0009877 / nodulation / 6 / 1 / 0.07051 / 0.0705
GO:0032446 / protein modification by small protein co... / 419 / 9 / 0.06815 / 0.4861
GO:0009605 / response to external stimulus / 493 / 11 / 0.03694 / 0.5035
GO:0002250 / adaptive immune response / 4 / 1 / 0.04757 / 1
GO:0002252 / immune effector process / 4 / 1 / 0.04757 / 1
GO:0002376 / immune system process / 8 / 1 / 0.0929 / 1
GO:0002437 / inflammatory response to antigenic stimu... / 4 / 1 / 0.04757 / 1
GO:0002438 / acute inflammatory response to antigenic... / 4 / 1 / 0.04757 / 1
GO:0002443 / leukocyte mediated immunity / 4 / 1 / 0.04757 / 1
GO:0002449 / lymphocyte mediated immunity / 4 / 1 / 0.04757 / 1
GO:0002460 / adaptive immune response based on somati... / 4 / 1 / 0.04757 / 1
GO:0002524 / hypersensitivity / 4 / 1 / 0.04757 / 1
GO:0002526 / acute inflammatory response / 4 / 1 / 0.04757 / 1
GO:0006954 / inflammatory response / 4 / 1 / 0.04757 / 1
GO:0006955 / immune response / 8 / 1 / 0.0929 / 1
GO:0006979 / response to oxidative stress / 143 / 4 / 0.09558 / 1
GO:0008361 / regulation of cell size / 57 / 3 / 0.03163 / 1
GO:0009611 / response to wounding / 5 / 1 / 0.05911 / 1
GO:0009617 / response to bacterium / 4 / 1 / 0.04757 / 1
GO:0009620 / response to fungus / 4 / 1 / 0.04757 / 1
GO:0016064 / immunoglobulin mediated immune response / 4 / 1 / 0.04757 / 1
GO:0016999 / antibiotic metabolic process / 40 / 5 / 0.00011 / 1
GO:0017144 / drug metabolic process / 40 / 5 / 0.00011 / 1
GO:0019724 / B cell mediated immunity / 4 / 1 / 0.04757 / 1
GO:0051707 / response to other organism / 4 / 1 / 0.04757 / 1
shoot
GO:0009877 / nodulation / 6 / 2 / 7.80E-05 / 7.80E-05
GO:0006629 / lipid metabolic process / 766 / 6 / 0.00739 / 0.0074
GO:0005978 / glycogen biosynthetic process / 6 / 1 / 0.01393 / 0.0139
GO:0006306 / DNA methylation / 30 / 1 / 0.06782 / 0.0678
GO:0009653 / anatomical structure morphogenesis / 187 / 2 / 0.07016 / 0.0702
GO:0005977 / glycogen metabolic process / 6 / 1 / 0.01393 / 1
GO:0006112 / energy reserve metabolic process / 6 / 1 / 0.01393 / 1
GO:0006304 / DNA modification / 34 / 1 / 0.07653 / 1
GO:0006305 / DNA alkylation / 30 / 1 / 0.06782 / 1
GO:0015980 / energy derivation by oxidation of organi... / 21 / 1 / 0.04796 / 1
GO:0032259 / methylation / 32 / 1 / 0.07218 / 1
GO:0040029 / regulation of gene expression, epigeneti... / 38 / 1 / 0.08515 / 1
GO:0043414 / biopolymer methylation / 32 / 1 / 0.07218 / 1
GO:0044403 / symbiosis, encompassing mutualism throug... / 12 / 2 / 0.00034 / 1
GO:0044419 / interspecies interaction between organis... / 12 / 2 / 0.00034 / 1
GO:0051704 / multi-organism process / 80 / 2 / 0.01484 / 1