Online Resource 1. Previously identified quantitative trait loci (QTL)stem rust resistance.

Marker or loci / Chromosome / cM Position / Trait / Commnet / Referencea / Materials
12_10674 / 5H / 68.83 / MCCFC - Adult / - / Mamo 2013 / Ethiopian and Etrian Barley GWAS
SCRI_RS_115905 / 2H / 41.67 / TTKSK - Seedling / - / Mamo 2013 / Ethiopian and Etrian Barley GWAS
SCRI_RS_109266 / 2H / 172.15 / TTKSK - Seedling / - / Mamo 2013 / Ethiopian and Etrian Barley GWAS
SCRI_RS_180847 / 3H / 152.69 / TTKSK - Seedling / - / Mamo 2013 / Ethiopian and Etrian Barley GWAS
12_30995 / 4H / 54.95 / TTKSK - Seedling / - / Mamo 2013 / Ethiopian and Etrian Barley GWAS
SCRI_RS_10929 / 5H / 2.62 / TTKSK - Seedling / - / Mamo 2013 / Ethiopian and Etrian Barley GWAS
11_20206 / 5H / 6.55 / TTKSK - Seedling / - / Mamo 2013 / Ethiopian and Etrian Barley GWAS
11_21472 / 3H / 66.62 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace F2's
11_20501 / 5H / 51.51 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace F2's
11_21061 / 5H / 99.39 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace F2's
11_10901 / 5H / 152.93 / TTKSK - Seedling / - / Mamo et al. 2015 / Wild Barley F2's
11_10528 / 5H / 155.45 / TTKSK - Seedling / - / Mamo et al. 2015 / Wild Barley F2's
11_21024 / 5H / 155.66 / TTKSK - Seedling / - / Mamo et al. 2015 / Wild Barley F2's
11_10336 / 5H / 157.61 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace and Wild Barley F2's
11_20646 / 5H / 157.61 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace and Wild Barley F2's
11_21018 / 5H / 157.61 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace F2's
11_11464 / 5H / 158.28 / TTKSK - Seedling / - / Mamo et al. 2015 / Wild Barley F2's
11_11216 / 5H / 162.98 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace and Wild Barley F2's
11_20546 / 5H / 163.72 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace F2's
11_20686 / 5H / 163.72 / TTKSK - Seedling / - / Mamo et al. 2015 / Wild Barley F2's
11_20644 / 5H / 164.15 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace and Wild Barley F2's
11_10869 / 5H / 165.28 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace F2's
11_20536 / 5H / 168.44 / TTKSK - Seedling / - / Mamo et al. 2015 / Swiss Landrace F2's
Bin-16/17/18 / 2H / 44-55 / TTKSK - Seedling / eQTL, Mock / Moscou et al. 2011 / QSM Population DH Mapping
Bin-21/22 / 2H / 63-64 / TTKSK - Seedling / eQTL, Inoc / Moscou et al. 2011 / QSM Population DH Mapping
Bin-28/29 / 2H / 75-76 / TTKSK - Seedling / eQTL, Mock / Moscou et al. 2011 / QSM Population DH Mapping
Bin-40 / 6H / 6H.40 / TTKSK - Seedling / eQTL, Inoc / Moscou et al. 2011 / QSM Population DH Mapping
Bin-44 / 1H / 154.8 / TTKSK- Adult / Infection Coefficient / Moscou et al. 2011 / QSM Population DH Mapping
Bin-47 / 1H / 165.6 / TTKSK- Adult / Severity, Infection Coefficient / Moscou et al. 2011 / QSM Population DH Mapping
Bin-16 / 2H / 44.2 / TTKSK- Adult / TTKSK - Adult -Lesion Size, Infection Coefficient, Severity / Moscou et al. 2011 / QSM Population DH Mapping
Bin-53 / 3H / 178.2 / TTKSK- Adult / Lesion Size / Moscou et al. 2011 / QSM Population DH Mapping
Bin-53 / 3H / 182.2 / TTKSK- Adult / Lesion Size / Moscou et al. 2011 / QSM Population DH Mapping
Bin-25 / 5H / 72.2 / TTKSK- Adult / Lesion Size / Moscou et al. 2011 / QSM Population DH Mapping
Bin-27 / 5H / 74.9 / TTKSK- Adult / TTKSK - Adult -Lesion Size, Infection Coefficient, Severity / Moscou et al. 2011 / QSM Population DH Mapping
Bin-45 / 5H / 141.3 / TTKSK- Adult / Severity / Moscou et al. 2011 / QSM Population DH Mapping
Bin-46 / 5H / 141.4 / TTKSK- Adult / TTKSK - Adult -Lesion Size, Infection Coefficient, Severity / Moscou et al. 2011 / QSM Population DH Mapping
Bin-48 / 5H / 145.4 / TTKSK- Adult / TTKSK - Adult -Lesion Size, Infection Coefficient, Severity / Moscou et al. 2011 / QSM Population DH Mapping
Bin-50 / 5H / 148.1 / TTKSK- Adult / Lesion Size / Moscou et al. 2011 / QSM Population DH Mapping
Bin-4 / 6H / 6.7 / TTKSK- Adult / Lesion Size / Moscou et al. 2011 / QSM Population DH Mapping
Bin-14 / 6H / 33.8 / TTKSK- Adult / Severity / Moscou et al. 2011 / QSM Population DH Mapping
Bin-32 / 7H / 76.8 / TTKSK- Adult / Severity, Infection Coefficient / Moscou et al. 2011 / QSM Population DH Mapping
Bin-48 / 5H / 145.43 / TTKSK- Seedling / - / Moscou et al. 2011 / QSM Population DH Mapping
Bin-49 / 5H / 146.78 / TTKSK- Seedling / - / Moscou et al. 2011 / QSM Population DH Mapping
Bin-49 / 5H / 146.78 / TTKSK- Seedling / - / Moscou et al. 2011 / QSM Population DH Mapping
Bin-49 / 5H / 146.78 / TTKSK- Seedling / - / Moscou et al. 2011 / QSM Population DH Mapping
lca1 / 1H / 55 / MCCFC-seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
ABG474 / 6H / 75 / MCCFC-seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
DAk133 / 5H / 5 / MCCFC-seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
MWG920.1A / 5H / 15 / MCCFC-seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
ABG496 / 5H / 170 / MCCFC-seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
WMG503 / 2H / 110 / MCCFC, QCCJB -seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
JS195F / 3H / 15 / MCCFC, QCCJB, Pgs -seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
ABC807A / 6H / 135 / Pgs-seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
BCD1532 / 3H / 50 / QCCJB-seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
ABG004 / 3H / 145 / QCCJB-seedling / - / Steffenson et al. 2007 / Wild Barley Diversity Collection GWAS
SCRI_RS_216088 / 1H / 122.2 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
SCRI_RS_216088 / 1H / 122.2 / Pgt - Adult / Seed Maturity, Heading, not multiple testing significant,
MLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_20714 / 2H / 132.6 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
12_21386 / 3H / 131.3 / Pgt - Adult / Seed Maturity, not multiple testing significant,
GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
SCRI_RS_189710 / 3H / 135.6 / Pgt - Adult / Seed Maturity, not multiple testing significant,
GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
SCRI_RS_96016 / 4H / 59.5 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_10785 / 4H / 90 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
12_30158 / 4H / 97 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
12_10844 / 5H / 93.9 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
SCRI_RS_189878 / 6H / 28.5 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_20936 / 6H / 44.1 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_21225 / 6H / 63.5 / Pgt - Adult / Heading, multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_21225 / 6H / 63.5 / Pgt - Adult / Seed Maturity, Heading, not multiple testing significant,
MLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_21293 / 6H / 63.5 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
12_30637 / 6H / 63.5 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
SCRI_RS_152841 / 6H / 63.5 / Pgt - Adult / Heading, multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
SCRI_RS_152841 / 6H / 63.5 / Pgt - Adult / Seed Maturity, Heading, not multiple testing significant,
MLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_21069 / 6H / 63.9 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_10781 / 6H / 71 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_20287 / 6H / 72.79 / Pgt - Adult / Heading, not multiple testing significant, GLM / Turuspekov et al. 2016 / Kazakhstan Spring Barley GWAS
11_11355 / 5H / 86.6 / TTKSK - Adult / - / Zhou et al. 2014 / North American Breeding GWAS
12_31427 / 5H / 90.8 / TTKSK - Adult / - / Zhou et al. 2014 / North American Breeding GWAS
12_10930 / 5H / 94.4 / TTKSK - Adult / - / Zhou et al. 2014 / North American Breeding GWAS
12_11106 / 5H / 94.4 / TTKSK - Adult / - / Zhou et al. 2014 / North American Breeding GWAS
12_21497 / 5H / 94.4 / TTKSK - Adult / - / Zhou et al. 2014 / North American Breeding GWAS
11_21491 / 7H / 48.9 / TTKSK - Seedling / - / Zhou et al. 2014 / North American Breeding GWAS
12_30528 / 7H / 49.7 / TTKSK - Seedling / - / Zhou et al. 2014 / North American Breeding GWAS

a References for stem rust QTL (Mamo 2013; Mamo et al. 2015; Moscou et al. 2011; Steffenson et al. 2007; Turuspekov et al. 2016; Zhou et al. 2014)

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