Table S5 Detection of the cSSRs and recombination eventsin BYVB isolates

Accession number / cSSR analysis / Recombination analysis
cSSR motif / cSSR location / Recombination breakpoints / Putative parental sequences / RDP methods* / p-value#
Start / End / Start / End / Major / Minor
AJ308425 / (AT)4-x8-(A)6 / 828 / 849 / 731 / 886 / GU111992 / GU111980 / RGBMCS3 / 2.221X10-11
EF417919 / Absent / - / - / 757 / 1300 / GU111988 / GU111985 / RGBMCS3 / 1.918X10-09
EU081883 / (A)8-x6-(GGAA)3 / 594 / 618 / 20 / 872 / Unknown / GU111988 / RGBMCS3 / 4.163X10-11
GU111961 / (AT)3-x8-(A)6 / 828 / 849 / 1136 / 3 / Unknown / KF471034 / RGBMCS3 / 5.358X10-05
GU111967 / (AT)6-x6-(A)6
(AATA)4-x1-(AGAAA)3-x3-(A)6 / 824
900 / 847
939 / 1347 / 352 / AJ316037 / GU111992 / MCS / 2.001X10-43
GU111968 / (AT)6-x6-(A)6
(A)8-x3-(GA)3
(A)9-x7-(AGAAA)3-x3-(A)6 / 825
868
902 / 848
884
940 / 20 / 877 / AJ316037 / GU111992 / MCS / 2.001X10-43
GU111971 / (AT)6-x6-(A)6
(A)8-x3-(GA)3 / 826
869 / 849
885 / 20 / 878 / AJ316037 / GU111992 / MCS / 2.001X10-43
GU111972 / (A)8-x1-(G)6 / 870 / 884 / 759 / 1338 / GU111991 / Unknown / MCS / 2.001X10-43
GU111974 / (TA)3-x7-(A)6
(A)9-x9-(AAAGA)3-x-1-(A)6 / 832
904 / 850
942 / 554 / 1167 / GU111988 / GU111976 / RGBMCS3 / 4.163X10-11
GU111976 / (AT)6-x6-(A)6
(A)9-x2-(GA)3 / 806
849 / 829
865 / 20 / 858 / AJ316037 / GU111992 / MCS / 2.001X10-43
GU111977 / (AT)7-x6-(A)6
(A)8-x3-(GA)3 / 826
871 / 851
887 / 20 / 880 / AJ316037 / GU111992 / MCS / 2.001X10-43
GU111979 / (AGAA)5-x-1-(AT)6-x6-(A)11 / 827 / 874 / 454 / 800 / Unknown / GU233520 / RGBMCS3 / 1.064X10-15
GU111982 / (A)8-x3-(GA)3 / 874 / 890 / 55 / 214 / GU111972 / EU188922 / RGBMCS3 / 8.943X10-16
GU111983 / (AT)6-x6-(A)6
(A)7-x3-(GA)3-x7-(A)7-x4-(A)8 / 812
855 / 835
896 / 96 / 213 / GU111972 / EU188922 / RGBMCS3 / 8.943X10-16
GU111985 / Absent / - / - / 495 / 665 / GU233520 / GU111992 / RGBMCS3 / 6.631X10-10
GU111987 / (AT)3-x0-(TG)3 / 602 / 613 / 1228 / 13 / Unknown / KF471034 / RGBMCS3 / 5.358X10-05
GU111988 / (AT)6-x6-(A)6 / 846 / 869 / 43 / 576 / AJ316037 / GU111992 / MCS / 2.001X10-43
GU111990 / (A)10-x5-(GA)3 / 878 / 898 / 1099 / 1205 / GU111983 / GU111992 / GBS / 9.557X10-06
GU111991 / (AT)6-x6-(A)6
(A)8-x3-(GA)3 / 811
854 / 834
870 / 20 / 863 / AJ316037 / GU111992 / MCS / 2.001X10-43
GU111994 / (AT)6-x6-(A)6
(A)8-x3-(GA)3 / 826
869 / 849
885 / 20 / 878 / AJ316037 / GU111992 / MCS / 2.001X10-43
GU233520 / Absent / - / - / 652 / 1126 / GU111992 / GU111980 / RGBMCS3 / 2.221X10-11
HM590504 / (AT)6-x6-(A)6 / 825 / 848 / 20 / 877 / AJ316037 / GU111992 / MCS / 2.001X10-43
HM590506 / (AT)6-x6-(A)6 / 827 / 850 / 20 / 879 / AJ316037 / GU111992 / MCS / 2.001X10-43
JF792241 / (AT)6-x6-(A)6
(A)8-x3-(GA)3
(A)7-x5-(AT)5 / 806
849
1055 / 829
865
1076 / 20 / 858 / AJ316037 / GU111992 / MCS / 2.001X10-43
KF471034 / (AT)4-x8-(A)6
(A)8-x3-(GA)3
(A)6-x1-(A)6 / 840
881
944 / 861
897
956 / 20 / 890 / AJ316037 / GU111992 / MCS / 2.001X10-43
KF471035 / (AT)6-x6-(A)7
(A)10-x2-(GA)4 / 908
949 / 919
954 / 20 / 721 / AJ316037 / GU111992 / MCS / 2.001X10-43
KF471036 / (AT)6-x6-(A)6
(A)10-x2-(GA)3 / 826
867 / 849
884 / 20 / 721 / AJ316037 / GU111992 / MCS / 2.001X10-43
GU111986 / (AGAA)3-x4-(TA)3 / 824 / 845 / 598 / 1363 / GU111988 / GU111976 / RGBMCS3 / 4.163X10-11
GU111975 / (ATA)4-x8-(ATGT)3
(AGAA)3-x4-(TA)3 / 250
816 / 280
837 / 142 / 609 / GU111991 / Unknown / GBMCS / 6.729X10-07
GU111976 / (AT)6-x6-(A)6
(A)9-x2-(GA)3 / 806
849 / 829
865 / 81 / 410 / GU111986 / GU111993 / RGB3 / 2.122X10-08
GU111986 / (AGAA)3-x4-(TA)3 / 824 / 845 / 598 / 1363 / GU111988 / GU111976 / RGBMCS3 / 4.163X10-11
GU111992 / (A)6-x7-(GC)3 / 846 / 864 / 880 / 1221 / GU111988 / GU111976 / RGBMCS3 / 4.163X10-11
GU111969 / (AAT)5-x7-(ATG)3-x0-(TCT)3
(AT)6-x6-(A)6
(A)9-x3-(GA)3 / 249
826
869 / 288
849
886 / 448 / 656 / Unknown / GU233520 / RGBMCS3 / 1.064X10-15
GU111964 / (AT)6-x6-(A)11 / 787 / 815 / 444 / 751 / Unknown / GU233520 / RGBMCS3 / 1.064X10-15
GU111984 / Absent / 685 / 904 / GU111967 / Unknown / RGBMCS3 / 5.736X10-13
GU111973 / (AT)4-x8-(A)6 / 828 / 849 / 1201 / 23 / Unknown / KF471034 / RGBMCS3 / 5.358X10-05
GU111980 / Absent / 768 / 1136 / GU111988 / GU111985 / RGBMCS3 / 1.918X10-09
EU188922 / (A)8-x6-(GGAA)3 / 594 / 618 / 623 / 905 / GU111988 / GU111985 / RGBMCS3 / 1.918X10-09
GU111978 / (AT)6-x6-(A)6
(A)8-x3-(GA)6 / 826
869 / 849
891 / - / - / - / - / - / -
GU111993 / (TA)3-x1-(TG)3 / 600 / 612 / - / - / - / - / - / -
GU111989 / (AT)6-x6-(A)6
(A)8-x3-(GA)3 / 825
868 / 848
884 / - / - / - / - / - / -
GU111970 / (AT)6-x6-(A)6 / 826 / 849
GU111966 / (AT)6-x6-(A)6
(A)8-x3-(GA)3
(A)9-x7-(AGAAA)3-x3-(A)6 / 819
862
869 / 842
878
934 / 946 / 1155 / GU111988 / GU111976 / RGBMCS3 / 4.163X10-11

*R-RDP; G-GENCONV; B-BOOTSCAN; M-MAXCHI; C-CHIMERA; S-SISCAN; 3-3SEQ

#The lowest p-value detected by the methods given in the previous column.

1