Table S1. List of all pYE854 ORFs.
ORF / Start / Stop / Strand / Length (aa) / Related protein / E-value / Identity (%) / length of region (aa) / Accession number (NCBI)001 / 366 / 1388 / + / 340 / transposase [Y. pestis KIM] / 0.0 / 95 / 340 / AAC82723.1
002 / 841 / 1008 / + / 55 / - / - / - / -
003 / 1803 / 1489 / - / 104 / hypothetical protein YPA_MT0073 [Y. pestis Antiqua] / 3,0E-06 / 84 / 26 / YP_636761.1
004 / 1926 / 2243 / - / 105 / hypothetical protein YR71pYR1_0023 [Y. ruckeri]
putative plasmid-related protein [P. damselae sp. piscicida] / 3,0E-15
5,0E-14 / 47 / 97
45 / 96 / YP_001101717.1
YP_908750.1
005 / 2537 / 2746 / + / 69 / - / - / - / -
006 / 3096 / 2431 / - / 221 / hypothetical protein AmetDRAFT_2972 [A. metalliredigenes QYMF] / 2,0E-31 / 37 / 213 / ZP_00799958.1
007 / 3826 / 3990 / + / 54 / - / - / - / -
008 / 4048 / 5493 / + / 481 / site-specific DNA methylase [Y. pestis biovar Orientalis str. IP275]
C-5 cytosine-specific DNA methylase [A. salmonicida A449] / 7,0E-116
3,0E-113 / 45 / 470
46 / 456 / ZP_01175891.1
ABO92434.1
009 / 4793 / 4497 / - / 98 / - / - / - / -
010 / 5616 / 5993 / + / 125 / hypothetical protein pCTX-M3_039 [C. freundii]
YagA [E. coli] / 1,0E-15
7,0E-13 / 39 / 112
40 / 108 / NP_774998.1
BAB12594.1
011 / 6105 / 7598 / + / 497 / hypothetical protein YberA_01003565 [Y. bercovieri ATCC 43970]
putative DNA primase [C. difficile 630]
ribonuclease E [P. carbinolicus DSM 2380]
putative cell-wall anchored surface adhesin [S. agalactiae]
putative pathogenicity protein [S. agalactiae 2603V/R] / 2,0E-157
5,0E-12
5,0E-11
4,0E-10
2,0E-09 / 98 / 306
23 / 394
49 / 79
53 / 56
64 / 45 / ZP_00820298.1
YP_001087592.1
YP_357450.1
CAJ66802.1
NP_689049.1
012 / 6389 / 6189 / - / 66 / - / - / - / -
013 / 6562 / 6401 / - / 53 / hypothetical protein Cphamn1DRAFT_2669 [C. phaeobacteroides BS1] / 1,2E-02 / 50 / 46 / ZP_00531443.1
014 / 7267 / 7037 / - / 76 / - / - / - / -
015 / 7761 / 8093 / + / 110 / hypothetical protein Plu0205 [P. luminescens sp. laumondii TTO1]
phage-related protein [Y. intermedia ATCC 29909]
Gp49 [E. coli bacteriophage N15]
Gp49 [K. oxytoca bacteriophage KO2] / 1,0E-32
4,0E-28
2,0E-12
6,0E-12 / 82 / 101
56 / 108
40 / 103
40 / 103 / NP_927569.1
ZP_00834926.1
NP_046945.1
YP_006629.1
016 / 8086 / 8388 / + / 100 / predicted transcriptional regulator [Y. bercovieri ATCC 43970]
putative DNA-binding phage-related protein [Y. enterocolitica 8081]
Gp48 [E. coli bacteriophage N15]
Gp48 [K. oxytoca bacteriophage KO2] / 4,0E-41
4,0E-21
1,0E-04
2,0E-03 / 95 / 100
57 / 94
32 / 83
29 / 87 / ZP_00820297.1
YP_001006332.1
NP_046944.1
YP_006628.1
017 / 8522 / 8701 / + / 59 / - / - / - / -
018 / 8863 / 9264 / + / 133 / uncharacterized anaerobic dehydrogenase [Y. bercovieri ATCC 43970] / 5,0E-46 / 89 / 110 / ZP_00820229.1
019 / 9300 / 10109 / + / 269 / putative aconitate hydratase [G. lovleyi SZ] / 1,6E-02 / 37 / 67 / ZP_01594594.1
020 / 10488 / 10667 / + / 59 / - / - / - / -
021 / 10829 / 11230 / + / 133 / uncharacterized anaerobic dehydrogenase [Y. bercovieri ATCC 43970] / 5,0E-46 / 89 / 110 / ZP_00820229.1
022 / 11266 / 12075 / + / 269 / putative aconitate hydratase [G. lovleyi SZ] / 1,6E-02 / 37 / 67 / ZP_01594594.1
023 / 12795 / 13067 / + / 90 / - / - / - / -
024 / 13055 / 13357 / + / 100 / conserved hypothetical protein [E. coli] / 1,0E-06 / 37 / 67 / ABF67878.1
025 / 13371 / 13751 / + / 126 / - / - / - / -
026 / 14106 / 13810 / - / 98 / - / - / - / -
027 / 14390 / 14755 / + / 121 / - / - / - / -
028 / 14949 / 15278 / + / 109 / - / - / - / -
029 / 15199 / 14867 / - / 110 / - / - / - / -
030 / 15280 / 17352 / + / 690 / TraD [L. pneumophila sp. pneumophila str. Philadelphia 1]
type IV secretory pathway, VirD4 component [V. vulnificus CMCP6]
coupling protein TraD [E. coli plasmid F]
coupling protein TraD [S. flexneri plasmid R100] / 2,0E-74
5,0E-62
8,0E-61
6.0E-60 / 31 / 570
27 / 597
26 / 682
28 / 580 / YP_096091.1
NP_762611.1
NP_061481.1
NP_052980.1
031 / 15956 / 15630 / - / 108 / - / - / - / -
032 / 16490 / 16272 / - / 72 / - / - / - / -
033 / 16712 / 16930 / + / 72 / - / - / - / -
034 / 17106 / 16948 / - / 52 / - / - / - / -
035 / 17327 / 16902 / - / 141 / - / - / - / -
036 / 17353 / 22323 / + / 1656 / mobilization protein TraI [E. coli]
TraI [S. typhimurium plasmid R46]
putative plasmid transfer protein TraC [P. putida]
DNA helicase [Sphingomonas sp. KA1]
regulatory protein, LacI [S. wittichii RW1]
ATP-dependent exoDNAse subunit [T. denitrificans ATCC 33889]
oriT-specific relaxase; helicase [E. coli]
conjugative transfer nickase/helicase [S. flexneri plasmid R100]
oriT nicking and unwinding protein, fragment [S. sonnei Ss046]
conjugative transfer nickase/helicase [E. coli plasmid F] / 1,0E-90
2,0E-90
7,0E-79
9,0E-72
3,0E-70
1,0E-47
2,0E-43
4,0E-43
1,0E-42
1,0E-42 / 31 / 956
31 / 956
29 / 991
26 /1059
26 / 979
23 /1130
37 / 316
37 / 318
37 / 310
36 / 309 / AF109305_3
NP_511201.1
YP_534815.1
YP_718086.1
ZP_01609758.1
YP_394134.1
ABG29544.1
NP_052981.1
YP_313447.1
NP_061483.1
037 / 18239 / 18469 / + / 76 / - / - / - / -
038 / 18725 / 18525 / - / 66 / - / - / - / -
039 / 21782 / 21474 / - / 102 / - / - / - / -
040 / 22895 / 22368 / - / 175 / hypothetical protein PEL60p14 [E. amylovora]
hypothetical protein R46_003 [S. typhimurium plasmid R46]
restriction endonuclease [S. proteamaculans 568] / 2,0E-32
1,0E-31
2,0E-30 / 49 / 139
44 / 156
45 / 140 / NP_943213.1
NP_511181.1
ZP_01535230.1
041 / 23201 / 22896 / - / 101 / - / - / - / -
042 / 23568 / 23164 / - / 134 / - / - / - / -
043 / 24200 / 23568 / - / 210 / putative transglycosylase PilT [S. typhimurium plasmids R46/ pKM101]
putative twitching motility protein PilT [S. glossinidius str. morsitans]
lytic transglycosylase, catalytic [Enterobacter sp. 638]
hypothetical protein YE3411 [Y. enterocolitica 8081]
lytic transglycosylase [E. coli plasmid F] / 2,0E-21
5,0E-21
6,0E-21
9.0E-19
3.0E-13 / 40 / 132
42 / 163
40 / 143
41 / 141
36 / 155 / BAA77980.1
YP_456185.1
ZP_01589853.1
YP_001007577.1
NP_061449.1
044 / 24320 / 24748 / + / 142 / - / - / - / -
045 / 24758 / 25174 / + / 138 / histone-like nucleoid-structuring protein H-NS [S. putrefaciens 200]
DNA-binding protein H-NS [Marinomonas sp. MED121] / 6,0E-04
7,0E-03 / 27 / 118
27 / 101 / ZP_01704518.1
ZP_01076238.1
046 / 25504 / 25683 / + / 59 / - / - / - / -
047 / 25505 / 25251 / - / 84 / - / - / - / -
048 / 25640 / 25891 / + / 83 / - / - / - / -
049 / 26280 / 25510 / - / 256 / hypothetical protein YpseI_02003938 [Y. pseudotuberculosis IP 31758]
integrase [Y. bercovieri ATCC 43970]
putative resolvase/recombinase [Y. enterocolitica 8081]
phage integrase [Enterobacter sp. 638]
site-specific recombinase int [E. coli plasmid F] / 3,0E-140
2,0E-137
1,0E-78
2,0E-47
1,0E-45 / 99 / 256
97 / 256
62 / 252
48 / 239
46 / 246 / ZP_01494755.1
ZP_00821919.1
YP_001004116.1
ZP_01589887.1
NP_061423.1
050 / 26285 / 26076 / - / 69 / - / - / - / -
051 / 26657 / 26463 / - / 64 / - / - / - / -
052 / 26875 / 26723 / - / 50 / - / - / - / -
053 / 27170 / 26982 / - / 62 / - / - / - / -
054 / 27785 / 27576 / - / 69 / - / - / - / -
055 / 27837 / 27067 / - / 256 / hypothetical protein AGR_pAT_528 [A. tumefaciens str. C58]
autotransporter protein [A. tumefaciens str. C58]
type IV secretory pathway, adhesin AidA [B. cenocepacia PC184]
large exoprotein involved in heme utilization or adhesion [E. coli F11] / 5,0E-21
9,0E-21
7,0E-15
1,0E-04 / 27 / 262
27 / 262
27 / 251
22 / 252 / NP_396297.1
NP_535736.1
ZP_00978381.1
ZP_00722498.1
056 / 28090 / 27800 / - / 96 / - / - / - / -
057 / 28384 / 28776 / + / 130 / - / - / - / -
058 / 29074 / 29289 / + / 71 / - / - / - / -
059 / 29753 / 27822 / - / 643 / filamentous haemagglutinin, adhesin HecA repeat 2x [R. eutropha JMP134]
serine protease EspC precursor (EPEC-secreted protein C) / 3,0E-03
4,0E-03 / 23 / 451
28 / 240 / YP_294319.1
ESPC_ECO27
060 / 31844 / 32029 / + / 61 / - / - / - / -
061 / 32141 / 32293 / + / 50 / - / - / - / -
062 / 32162 / 29763 / - / 799 / hypothetical protein VV0534 [V. vulnificus YJ016]
hypothetical protein VV0533 [V. vulnificus YJ016]
hyaluronate lyase precursor [V. fischeri ES114]
putative xanthan lyase XalB precursor [P. alginolyticus] / 7,0E-146
4,0E-123
3,0E-116
4,0E-76 / 39 / 813
34 / 781
34 / 769
29 / 786 / NP_933327.1
NP_933326.1
YP_206952.1
AF318176_1
063 / 32520 / 32699 / + / 59 / - / - / - / -
064 / 32722 / 32534 / - / 62 / - / - / - / -
065 / 32899 / 32747 / - / 50 / - / - / - / -
066 / 33185 / 32181 / - / 334 / hypothetical protein VV0535 [V. vulnificus YJ016] / 9,0E-38 / 33 / 339 / NP_933328.1
067 / 33216 / 33389 / + / 57 / - / - / - / -
068 / 33472 / 33636 / + / 54 / - / - / - / -
069 / 33913 / 34065 / + / 50 / - / - / - / -
070 / 34696 / 33230 / - / 488 / hypothetical protein PCNPT3_11983 [Psychromonas sp. CNPT3]
hypothetical protein YPTB3087 [Y. pseudotuberculosis IP 32953]
hypothetical protein VV0544 [V. vulnificus YJ016] / 4,0E-131
1,0E-130
3,0E-119 / 46 / 493
46 / 492
44 / 492 / ZP_01217030.1
YP_071592.1
NP_933337.1
071 / 35022 / 34864 / - / 52 / - / - / - / -
072 / 35274 / 35053 / - / 73 / - / - / - / -
073 / 35755 / 34721 / - / 344 / hypothetical protein VV0541 [V. vulnificus YJ016]
hypothetical protein PCNPT3_11988 [Psychromonas sp. CNPT3]
hypothetical protein YpseI_02000851 [Y. pseudotuberculosis IP 31758]
predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [Y. pestisAngola]
glycosyl hydrolase, family 88 [Acidobacteria bacterium Ellin345] / 2,0E-111
6,0E-108
4,0E-107
5,0E-107
4,0E-49 / 58 / 334
53 / 341
55 / 341
55 / 341
37 / 320 / NP_933334.1
ZP_01217031.1
ZP_01495732.1
ZP_00796104.1
YP_590039.1
074 / 36034 / 36285 / + / 83 / - / - / - / -
075 / 36272 / 35835 / - / 145 / PTS, mannose/fructose-specific component IIA [V. vulnificus YJ016]
PTS, N-acetylgalactosamine-specific IIA component [Y. pseudotuberculosis IP 32953]
PTS, N-acetylgalactosamine-specific IIA component [Psychromonas sp. CNPT3] / 2,0E-34
2,0E-28
3,0E-26 / 58 / 124
51 / 124
50 / 124 / NP_933333.1
YP_071586.1
ZP_01217033.1
076 / 36679 / 36882 / + / 67 / - / - / -
077 / 36918 / 37097 / + / 59 / - / - / -
078 / 36919 / 36734 / - / 61 / - / - / -
079 / 37151 / 36282 / - / 289 / PTS, mannose/fructose/N-acetylgalactosamine-specific component IID [V. vulnificus YJ016]
putative PTS permease protein, IID subunit [Y. pseudotuberculosis IP 32953]
PTS, N-acetylgalactosamine-specific IID component [Psychromonas sp. CNPT3] / 9,0E-103
2,0E-87
2,0E-87 / 61 / 293
56 / 295
57 / 292 / NP_933332.1
YP_071585.1
ZP_01217034.1
080 / 37217 / 37408 / + / 63 / - / - / - / -
081 / 37541 / 37359 / - / 60 / - / - / - / -
082 / 37908 / 37138 / - / 256 / PTS, mannose/fructose/N-acetylgalactosamine-specific component IIC [V. vulnificus YJ016]
putative PTS permease protein, IIC subunit [Y. pseudotuberculosis IP 32953]
PTS, N-acetylgalactosamine-specific IIC component [Psychromonas sp. CNPT3] / 3,0E-82
4,0E-61
6,0E-58 / 63 / 254
54 / 235
50 / 256 / NP_933331.1
YP_071584.1
ZP_01217035.1
083 / 38075 / 38272 / + / 65 / - / - / - / -
084 / 38160 / 38408 / + / 82 / - / - / - / -
085 / 38181 / 37996 / - / 61 / - / - / - / -
086 / 38401 / 37928 / - / 157 / PTS, mannose/fructose/N-acetylgalactosamine-specific component IIB [V. vulnificus YJ016]
PTS, N-acetylgalactosamine-specific IIB component [Psychromonas sp. CNPT3]
PTS, N-acetylgalactosamine-specific IIB component [Y. pseudotuberculosis IP 32953] / 1,0E-43
3,0E-38
1,0E-37 / 55 / 155
51 / 158
50 / 156 / NP_933330.1
ZP_01217036.1
YP_071583.1
087 / 38945 / 39115 / + / 56 / - / - / - / -
088 / 39154 / 39408 / + / 84 / - / - / - / -
089 / 39302 / 38514 / - / 262 / transcriptional regulator of sugar metabolism [V. vulnificus YJ016]
DeoR-family regulatory protein [Y. pseudotuberculosis IP 32953]
transcriptional repressor of aga operon [Psychromonas sp. CNPT3] / 2,0E-29
1,0E-19
1,0E-11 / 33 / 246
32 / 231
25 / 243 / NP_933329.1
YP_071580.1
ZP_01217450.1
090 / 39492 / 39749 / + / 85 / hypothetical protein YPA_MT0073 [Y. pestis Antiqua] / 2,0E-06 / 84 / 26 / YP_636761.1
091 / 39689 / 39504 / - / 61 / - / - / - / -
092 / 40397 / 40230 / - / 55 / - / - / - / -
093 / 40415 / 40582 / + / 55 / - / - / - / -
094 / 40872 / 39850 / - / 340 / probable transposase [Y. pestis biovar Microtus str. 91001] / 0.0 / 94 / 340 / NP_995565.1
095 / 41029 / 41265 / + / 78 / - / - / - / -
096 / 41219 / 41485 / + / 88 / - / - / - / -
097 / 41237 / 40896 / - / 113 / hypothetical protein R64_p028 [S. typhimurium plasmid R64]
oxyanion-translocating ATPase [Y. intermedia ATCC 29909]
arsenical pump-driving ATPase [Y. enterocolitica 8081] / 6,0E-20
8,0E-15
1,0E-14 / 97 / 48
78 / 47
55 / 70 / NP_863383.1
ZP_00834873.1
YP_001007632.1
098 / 41382 / 41564 / + / 60 / - / - / - / -
099 / 41902 / 41246 / - / 218 / recombinase [S. typhimurium plasmid R46]
putative resolvase [Y. pestis biovar Microtus str. 91001] / 7,0E-104
1,0E-85 / 98 / 218
81 / 209 / NP_511241.1
NP_995411.1
100 / 41982 / 44990 / + / 1002 / transposase [E. coli plasmid F]
TnpA [Y. enterocolitica] / 0.0
0.0 / 91 / 1001
64 / 992 / NP_061389.1
CAA73750.1
101 / 42022 / 42180 / + / 52 / - / - / - / -
102 / 42122 / 41964 / - / 52 / hypothetical protein [E. coli] / 3,0E-02 / 53 / 39 / ABG49234.1
103 / 42397 / 42573 / + / 58 / - / - / - / -
104 / 43057 / 42761 / - / 98 / - / - / - / -
105 / 43285 / 43563 / + / 92 / - / - / - / -
106 / 43298 / 42996 / - / 100 / - / - / - / -
107 / 43587 / 43303 / - / 94 / - / - / - / -
108 / 43831 / 43613 / - / 72 / - / - / - / -
109 / 44498 / 44193 / - / 101 / - / - / - / -
110 / 44906 / 44646 / - / 86 / - / - / - / -
111 / 45167 / 46048 / + / 293 / ENSANGP00000029959 [A. gambiae str. PEST]
restriction endonuclease [E. coli F11] / 2,0E-112
8,0E-80 / 69 / 289
52 / 281 / XP_001230420.1
ZP_00726032.1
112 / 45201 / 45353 / + / 50 / - / - / - / -
113 / 45696 / 45899 / + / 67 / - / - / - / -
114 / 46062 / 46247 / + / 61 / - / - / - / -
115 / 46977 / 46144 / - / 277 / W0044 [E. coli] / 3,0E-19 / 29 / 257 / AF401292_38
116 / 47513 / 48139 / + / 208 / hypothetical protein XOO2824 [X. oryzae pv. oryzae KACC10331] / 8,0E-08 / 25 / 151 / YP_201463.1
117 / 48176 / 48418 / + / 80 / - / - / - / -
118 / 48489 / 48671 / + / 60 / - / - / - / -
119 / 48515 / 48234 / - / 93 / - / - / - / -
120 / 49072 / 48881 / - / 63 / - / - / - / -
121 / 49871 / 49107 / - / 254 / hypothetical protein YpseI_02003937 [Y. pseudotuberculosis IP 31758] / 2,0E-20 / 35 / 223 / ZP_01494754.1
122 / 50121 / 50852 / + / 243 / hypothetical protein YPTB1564 [Y. pseudotuberculosis IP 32953]
hypothetical protein YE2531 [Y. enterocolitica 8081]
permease of the major facilitator superfamily [Y. bercovieri ATCC 43970] / 2,0E-63
7,0E-11
3,0E-06 / 56 / 214
25 / 216
25 / 182 / YP_070092.1
YP_001006738.1
ZP_00821712.1
123 / 50845 / 51051 / + / 68 / - / - / - / -
124 / 50897 / 50697 / - / 66 / - / - / - / -
125 / 51098 / 51577 / + / 159 / hemolysin-coregulated protein [B. dolosa AUO158]
hemolysin-coregulated protein [Y. pestis biovar Microtus str. 91001] / 3,0E-45
8,0E-43 / 56 / 157
51 / 163 / EAY70565.1
NP_992726.1
126 / 51743 / 51537 / - / 68 / - / - / - / -
127 / 51850 / 52896 / + / 348 / hypothetical protein amb1131 [M. magneticum AMB-1] / 1,0E-16 / 31 / 238 / YP_420494.1
128 / 52866 / 52687 / - / 59 / - / - / - / -
129 / 53194 / 53445 / + / 83 / transcriptional regulator, XRE family [S. proteamaculans 568]
putative DNA-binding protein [Y. enterocolitica 8081]
predicted transcriptional regulator [Y. intermedia ATCC 29909] / 7,0E-28
8,0E-24
5,0E-23 / 71 /82
63 / 83
69 / 78 / ZP_01535204.1
YP_001007657.1
ZP_00833868.1
130 / 53273 / 53458 / + / 61 / - / - / - / -
131 / 53715 / 53560 / - / 51 / - / - / - / -
132 / 54076 / 53570 / - / 168 / - / - / - / -
133 / 54123 / 54293 / + / 56 / - / - / - / -
134 / 54424 / 54080 / - / 114 / - / - / - / -
135 / 54614 / 54802 / + / 62 / - / - / - / -
136 / 54747 / 54487 / - / 86 / - / - / - / -
137 / 55143 / 55325 / + / 60 / - / - / - / -
138 / 55906 / 56124 / + / 72 / - / - / - / -
139 / 56147 / 55866 / - / 93 / - / - / - / -
140 / 57170 / 57547 / + / 125 / - / - / - / -
141 / 58271 / 58483 / + / 70 / - / - / - / -
142 / 58491 / 54838 / - / 1217 / large exoprotein involved in heme utilization or adhesion [Y. bercovieri ATCC 43970]
DNA transfer and F pilus assembly protein [Sphingomonas sp. SKA58]
pilus assembly protein/ mating pair stabilization protein [E. coli plasmid F] / 0.0
4,0E-54
2.0E-08 / 99 / 1217
28 /496
16 / 595 / ZP_00821912.1
ZP_01301957.1
NP_061478.1
143 / 58636 / 58788 / + / 50 / - / - / - / -
144 / 59876 / 58488 / - / 462 / hypothetical protein YberA_01001910 [Y. bercovieri ATCC 43970]
putative pilus assembly protein [S. enterica sp. enterica serovar Typhi str. CT18]
conjugative transfer protein TraH precursor [S. flexneri plasmid R100]
conjugative transfer protein TraH precursor [E. coli plasmid F] / 0.0
5.0E-14
5.0E-11
1.0E-09 / 99 / 412
33 / 164
26 / 218
29 / 157 / ZP_00821911.1
NP_569448.1
NP_052975.1
NP_061477.1
145 / 60749 / 59886 / - / 287 / thiol-disulfide isomerase and thioredoxins [Y. bercovieri ATCC 43970]
glutaredoxin [P. propionicus DSM 2379]
conjugative transfer protein TraF precursor [S. flexneri plasmid R100]
conjugative transfer protein TraF precursor [E. coli plasmid F] / 2,0E-114
4,0E-36
1.0E-20
2.0E-20 / 100 / 208
36 / 215
19 / 248
19 / 248 / ZP_00821910.1
YP_899891.1
NP_052969.1
NP_061470.1
146 / 61039 / 61278 / + / 79 / - / - / - / -
147 / 61178 / 60759 / - / 139 / hypothetical protein YberA_01001908 [Y. bercovieri ATCC 43970]
putative lipoprotein [P. gingivalis W83] / 1,0E-58
6,0E-08 / 99 / 132
32 / 122 / ZP_00821909.1
NP_904997.1
148 / 61653 / 61189 / - / 154 / type IV secretory pathway, protease TraF [Y. bercovieri ATCC 43970]
TraF protein [plasmid pKJK5]
TraF protein [plasmid RK2] / 3,0E-73
3.0E-14
1.0E-13 / 98 / 137
20 / 165
20 / 139 / ZP_00821908.1
YP_709182.1
A45739
149 / 62119 / 61955 / - / 54 / - / - / - / -
150 / 62372 / 61653 / - / 239 / hypothetical protein YberA_01001906 [Y. bercovieri ATCC 43970]
TrbC, sex pilus assembly & mating pair formation protein [Erythrobacter sp. NAP1]
conjugative transfer protein TrbC [S. flexneri plasmid R100]
conjugative transfer protein TrbC [E. coli plasmid F] / 4,0E-117
2,0E-06
4.0E-10
3.0E-09 / 96 / 239
26 / 205
19 / 222
25 / 140 / ZP_00821907.1
ZP_01039316.1
NP_052965.1
NP_061467.1
151 / 62385 / 62564 / + / 59 / - / - / - / -
152 / 62757 / 62596 / - / 53 / - / - / - / -
153 / 62948 / 63259 / + / 103 / - / - / - / -
154 / 63078 / 63398 / + / 106 / - / - / - / -
155 / 63900 / 63712 / - / 62 / - / - / - / -
156 / 63955 / 62372 / - / 527 / hypothetical protein YberA_01001905 [Y. bercovieri ATCC 43970]
TraU family protein [P. propionicus DSM 2379]
conjugative transfer protein TraU precursor [S. flexneri plasmid R100]
conjugative transfer protein TraU precursor [E. coli plasmid F] / 0.0
2,0E-82
2e-44
7e-44 / 99 / 514
44 / 328
34 / 312
34 / 312 / ZP_00821906.1
YP_899942.1
NP_052963.1
NP_061466.1
157 / 64343 / 64110 / - / 77 / hypothetical protein PYptb0019 [Y. pseudotuberculosis IP 32953] / 2,0E-03 / 32 / 76 / YP_068527.1
158 / 64672 / 64433 / - / 79 / - / - / - / -
159 / 64921 / 65190 / + / 89 / - / - / - / -
160 / 65101 / 64901 / - / 66 / - / - / - / -
161 / 65569 / 65369 / - / 66 / - / - / - / -
162 / 65969 / 64359 / - / 536 / hypothetical protein YberA_01001904 [Y. bercovieri ATCC 43970]
hypothetical protein SKA58_02715 [Sphingomonas sp. SKA58]
essential for conjugative transfer protein [M. petroleiphilum PM1]
TraZ [S. flexneri plasmid R100]
mating pair stabilization outer membrane protein TraN precursor [E. coli plasmid F] / 2,0E-98
1,0E-53
4,0E-24
1.0E-12
1.0E-12 / 95 / 184
41 / 291
38 / 203
36 / 119
36 / 119 / ZP_00821905.1
ZP_01301951.1
YP_001023391.1
BAA78871.1
NP_061468.1
163 / 66236 / 66021 / - / 71 / - / - / - / -
164 / 67995 / 65944 / - / 683 / hypothetical protein YberA_01001903 [Y. bercovieri ATCC 43970]
hypothetical protein SKA58_02710 [Sphingomonas sp. SKA58]
type IV conjugative transfer system protein TraN [Y. ruckeri] / 0.0
1,0E-78
4,0E-25 / 97 / 662
30 / 619
44 / 149 / ZP_00821904.1
ZP_01301950.1
YP_001101789.1
165 / 69555 / 69403 / - / 50 / - / - / - / -
166 / 69845 / 70156 / + / 103 / - / - / - / -
167 / 70570 / 67997 / - / 857 / type IV secretory pathway, VirB4 components [Y. bercovieri ATCC 43970]
sex pilus assembly protein [S. aciditrophicus SB]
TraC [P. rettgeri]
conjugative transfer protein TraC [S. flexneri plasmid R100]
conjugative transfer protein TraC [E. coli plasmid F] / 0.0
6,0E-142
7,0E-56
4.0E-18
5.0E-18 / 94 / 849
34 / 863
25 / 850
22 / 767
22 / 767 / ZP_00821903.1
YP_461725.1
AAM08001.1
NP_052960.1
NP_061463.1
168 / 71076 / 70570 / - / 168 / hypothetical protein YberA_01001901 [Y. bercovieri ATCC 43970]
hypothetical protein SKA58_02670 [Sphingomonas sp. SKA58] / 4,0E-79
9,0E15 / 98 / 168
34 / 148 / ZP_00821902.1
ZP_01301942.1
169 / 71290 / 71628 / + / 112 / - / - / - / -
170 / 72025 / 72198 / + / 57 / - / - / - / -
171 / 72350 / 71100 / - / 416 / hypothetical protein YberA_01001900 [Y. bercovieri ATCC 43970]
TraB pilus assembly family protein [P. propionicus DSM 2379]
pilus assembly protein [Sphingomonas sp. SKA58]
conjugative transfer protein TraB [E. coli plasmid F]
conjugative transfer protein TraB [S. flexneri plasmid R100] / 3,0E-164
7,0E-39
4,0E-36
8.0E-10
7.0E-09 / 100 / 308
30 / 413
42 / 198
23 / 388
23 / 388 / ZP_00821901.1
YP_899948.1
ZP_01301941.1
NP_061457.1
NP_052951.1
172 / 72942 / 73142 / + / 66 / - / - / - / -
173 / 73135 / 72347 / + / 262 / hypothetical protein SKA58_02650 [Sphingomonas sp. SKA58]
hypothetical protein Ppro_3780 [P. propionicus DSM 2379] / 2,0E-27
4,0E-18 / 33 / 235
29 / 248 / ZP_01301938.1
YP_899622.1
174 / 73787 / 73137 / - / 216 / hypothetical sex pilus assembly and synthesis protein [Sphingomonas sp. SKA58]
hypothetical sex pilus assembly and synthesis protein [P. propionicus DSM 2379] / 1,0E-11
3,0E-08 / 27 / 176
29 / 180 / ZP_01301937.1
YP_899623.1
175 / 74069 / 73797 / - / 90 / hypothetical membrane protein [Sphingomonas sp. SKA58]
hypothetical protein Ppro_3782 [P. propionicus DSM 2379] / 2,0E-07
1,0E-06 / 29 / 89
30 / 85 / ZP_01301936.1
YP_899624.1
176 / 74454 / 74086 / - / 122 / hypothetical protein YberA_01001899 [Y. bercovieri ATCC 43970]
conjugative transfer protein TraE [S. flexneri plasmid R100]
conjugative transfer protein TraE [E. coli plasmid F] / 4,0E-33
2.0E-04
5.0E-04 / 100 / 76
19 / 181
23 / 110 / ZP_00821900.1
NP_052949.1
NP_061455.1
177 / 74694 / 74954 / + / 86 / - / - / - / -
178 / 74707 / 74883 / + / 58 / - / - / - / -
179 / 75389 / 74508 / - / 293 / protein-disulfide isomerase [Y. bercovieri ATCC 43970] / 4,0E-154 / 96 / 292 / ZP_00821899.1
180 / 75696 / 75379 / - / 105 / - / - / - / -
181 / 76110 / 75919 / - / 63 / - / - / - / -
182 / 76228 / 75908 / - / 106 / - / - / - / -
183 / 76692 / 76339 / - / 117 / phage terminase GpA [S. denitrificans OS217] / 2,8E-02 / 32 / 68 / YP_564251.1|
184 / 76769 / 76942 / + / 57 / - / - / - / -
185 / 76792 / 77067 / + / 91 / hypothetical protein YberA_01001897 [Y. bercovieri ATCC 43970] / 1,0E-46 / 100 / 91 / ZP_00821898.1
186 / 77209 / 77057 / - / 50 / - / - / - / -
187 / 77277 / 78677 / + / 466 / hypothetical protein PIP404_p03 [plasmid pIP404]
replication protein [C. perfringens] / 1,0E-06
5,0E-06 / 30 / 153
31 / 151 / NP_040453.1
YP_209688.1
188 / 77410 / 77592 / + / 60 / - / - / - / -
189 / 78322 / 78167 / - / 51 / - / - / - / -
190 / 79224 / 78844 / - / 126 / - / - / - / -
191 / 79519 / 80388 / + / 289 / ATPase involved in chromosome partitioning [Y. bercovieri ATCC 43970]
cobyrinic acid a,c-diamide synthase [Acidovorax sp. JS42]
IncC1 partitioning protein [plasmid pB3]
IncC1 protein [plasmid pKJK5]
IncC2 short form partitioning protein [plasmid pQKH54]
plasmid replication protein [X. fastidiosa 9a5c] / 4,0E-160
5,0E-17
9.0E-14
8.0E-13
8.0E-12
4,0E-12 / 99 / 274
30 / 261
26 / 291
26 / 258
28 / 262
27 / 248 / ZP_00821897.1
YP_974060.1
YP_133955.1
YP_709194.1
YP_619806.1
NP_061715.1
192 / 79808 / 79524 / - / 94 / - / - / - / -
193 / 80020 / 79808 / - / 70 / - / - / - / -
194 / 80385 / 81776 / + / 463 / predicted transcriptional regulator [Y. bercovieri ATCC 43970]
plasmid replication/partition protein [L. anguillarum]
KorB partitioning and repressor protein [plasmid QKH54]
KorB protein [plasmid pKJK5] / 0.0
8,0E-10
2,0E-03
4,0E-03 / 98 / 463
30 / 182
28 / 194
27 / 194 / ZP_00821896.1
AAO92393.1
YP_619804.1
YP_709193.1
195 / 81353 / 81189 / - / 54 / - / - / - / -
196 / 81779 / 82516 / + / 245 / hypothetical protein LV003 [K. pneumoniae] / 1,0E-05 / 34 / 89 / NP_943506.1
197 / 82781 / 82497 / - / 94 / - / - / - / -
198 / 82954 / 83436 / + / 160 / - / - / - / -
199 / 83053 / 82886 / - / 55 / - / - / - / -
200 / 83871 / 83431 / - / 146 / - / - / - / -
201 / 84373 / 84164 / - / 69 / - / - / - / -
202 / 84500 / 84321 / - / 59 / hypothetical protein RSP_7393 [R. sphaeroides 2.4.1]
hypothetical protein HCM1.186c [S. enterica ssp. enterica serovar Typhi str. CT18] / 7,0E-08
1,0E-06 / 57 / 54
56 / 53 / YP_345433.1
NP_569388.1
203 / 84711 / 85037 / + / 108 / - / - / - / -
204 / 85034 / 85222 / + / 62 / - / - / - / -
205 / 85265 / 85888 / + / 207 / hypothetical protein YberA_01003603 [Y. bercovieri ATCC 43970]
hypothetical protein YPTB1779 [Y. pseudotuberculosis IP 32953] / 2,0E-76
1,0E-08 / 98 / 142
31 / 119 / ZP_00820260.1
YP_070305.1
206 / 85698 / 85862 / + / 54 / - / - / - / -
207 / 85889 / 86638 / + / 249 / adenylosuccinate synthase [Y. bercovieri ATCC 43970]
hypothetical protein BmulDRAFT_0115 [B. multivorans ATCC 17616] / 7,0E-111
9,0E-17 / 90 / 211
35 / 192 / ZP_00820259.1
ZP_01573505.1
208 / 87286 / 87119 / - / 55 / - / - / - / -
209 / 87761 / 86739 / - / 340 / probable transposase [Y. pestis biovar Microtus str. 91001]
transposase [Y. pestis CO92] / 0.0
0.0 / 95 / 340
95 / 340 / NP_995565.1
NP_395425.1
210 / 87963 / 88127 / + / 54 / - / - / - / -
211 / 88141 / 89379 / + / 412 / transposase and inactivated derivatives [Y. bercovieri ATCC 43970]
transposase IS116/IS110/IS902 [Enterobacter sp. 638] / 0.0
0.0 / 96 / 412
95 / 412 / ZP_00820226.1
ZP_01590278.1
212 / 88254 / 87976 / - / 92 / prophage integrase (partial) [E. carotovora sp. atroseptica SCRI1043] / 5,0E-06 / 40 / 85 / YP_050272.1
213 / 88907 / 88635 / - / 90 / - / - / - / -
214 / 88916 / 89089 / + / 57 / - / - / - / -
215 / 89486 / 89289 / - / 65 / - / - / - / -
216 / 89752 / 89540 / - / 70 / - / - / - / -
217 / 89817 / 90428 / + / 203 / putative membrane protein [B. avium 197N]
hypothetical membrane protein [F. tularensis SCHU S4] / 2,0E-23
2,0E-21 / 33 / 179
33 / 186 / CAJ49184.1
YP_169677.1
218 / 90337 / 90101 / - / 78 / - / - / - / -
219 / 90628 / 91551 / + / 307 / cation efflux protein [D. aromatica RCB]
predicted Co/Zn/Cd cation transporter [N. punctiforme PCC 73102]
cobalt-zinc-cadmium resistance protein CzcD [B. melitensis 16M]
ferrous iron efflux protein F [V. fischeri ES114] / 1,0E-115
2,0E-79
1,0E-47
1,0E-28 / 70 / 300
57 / 295
41 / 284
29 / 282 / YP_284269.1
ZP_00110704.1
NP_539367.1
YP_205724.1
220 / 91006 / 90776 / - / 76 / - / - / - / -
221 / 91385 / 91221 / - / 54 / - / - / - / -
222 / 92064 / 92273 / + / 69 / - / - / - / -
223 / 92449 / 91808 / - / 213 / resolvase, N-terminal [S. baltica OS155]
site-specific recombinase, DNA invertase Pin homolog [E. coli B7A]
hypothetical protein [Y. enterocolitica] / 6,0E-98
3,0E-87
2,0E-40 / 95 / 210
94 / 191
49 / 147 / ZP_00580490.1
ZP_00714543.1
CAD58553.1
224 / 92617 / 342 / + / 1074 / transposase [P. vulgaris]
transposase Tn3 [Enterobacter sp. 638] / 0.0
0.0 / 89 / 1055
74 / 963 / NP_639975.1
ZP_01589907.1
225 / 92850 / 92683 / - / 55 / - / - / - / -
226 / 93128 / 92946 / - / 60 / - / - / - / -
227 / 93244 / 92993 / - / 83 / - / - / - / -
228 / 93756 / 93424 / - / 110 / - / - / - / -
229 / 93803 / 93618 / - / 61 / - / - / - / -
230 / 93986 / 94171 / + / 61 / - / - / - / -
231 / 94589 / 94780 / + / 63 / - / - / - / -
232 / 94645 / 94466 / - / 59 / - / - / - / -
References
1. Hood, E. E., G. L. Helmer, R. T. Fraley, and M. D. Chilton. 1986. The hypervirulence of Agrobacterium tumefaciens A281 is encoded in a region of pTiBo542 outside of T-DNA. J. Bacteriol. 168:1291-301.
2. Lewin, A., E. Strauch, S. Hertwig, B. Hoffmann, H. Nattermann, and B. Appel. 1996. Comparison of plasmids of strains of Yersinia enterocolitica biovar 1A with the virulence plasmid of a pathogenic Y. enterocolitica strain. Zentralbl. Bakteriol. 285:52-63.
3. Strauch, E., I. Voigt, H. Broll, and B. Appel. 2000. Use of a plasmid of a Yersinia enterocolitica biogroup 1A strain for the construction of cloning vectors. J. Biotechnol. 79:63-72.