Species

/ Organization: Web link

Neurospora crassa OR74A

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/neurospora/Home.html

Magnaporthe grisea 70-15

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/Home.html

Fusarium graminearum PH-1

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/fusarium_group/MultiHome.html

Fusarium verticillioides 7600

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/fusarium_group/MultiHome.html

Fusarium oxysporum 4286 FGSC

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/fusarium_group/MultiHome.html

Trichoderma reesei QM6a

/ JGI: http://genome.jgi-psf.org/Trire2/Trire2.home.html

Trichoderma virens Gv29-8

/ JGI: http://genome.jgi-psf.org/Trive1/Trive1.home.html

Podospora anserina S mat+

/ CNRS: http://podospora.igmors.u-psud.fr/

Chaetomium globosum CBS 148.51

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/chaetomium_globosum/Home.html

Aspergillus clavatus NRRL 1

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/aspergillus_terreus/MultiHome.html

Aspergillus flavus NRRL3357

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/aspergillus_terreus/MultiHome.html

Aspergillus fumigatus Af293

/ Sanger: http://www.sanger.ac.uk/Projects/A_fumigatus/

Aspergillus terreus NIH2624

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/aspergillus_group/GenomesIndex.html

Aspergillus nidulans FGSC A4

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/aspergillus_group/GenomesIndex.html

Aspergillus niger ATCC1015

/ JGI: http://genome.jgi-psf.org/Aspni1/Aspni1.home.html

Aspergillus oryzae RIB40

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/aspergillus_terreus/MultiHome.html

Histoplasma capsulatum NAm1

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/histoplasma_capsulatum/Home.html

Ascosphaera apis USDA-ARSEF 7405

/ Baylor College of Medicine: http://www.hgsc.bcm.tmc.edu/projects/microbial/microbial-detail.xsp?project_id=102

Coccidioides immitis RS

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/coccidioides_group/MultiHome.html

Coccidioides posadasii CPA0001

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/coccidioides_group/GenomesIndex.html

Paracoccidioides brasiliensis Pb01

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/paracoccidioides_brasiliensis/MultiHome.html

Uncinocarpus reesii 1704

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/uncinocarpus_reesii/Home.html

Botrytis cinerea B05.10

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/botrytis_cinerea/Home.html

Supplementary material Table 1. List of species genomes of which were analyzed in silico in present study and the sources of genomic sequences


Supplementary material Table 1 (continued). List of species genomes of which were analyzed in silico in present study and the sources of genomic sequences

Species

/ Organization: Web link

Sclerotinia sclerotiorum 1980

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/sclerotinia_sclerotiorum/Home.html

Stagonospora nodorum SN15

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/stagonospora_nodorum/Home.html

Alternaria brassicicola ATCC 96866

/ Genome Sequence Centre: http://genome.wustl.edu/genome.cgi?GENOME=Alternaria%20brassicicola

Mycosphaerella fijiensis

/ JGI: http://genome.jgi-psf.org/Mycfi1/Mycfi1.home.html

Pyrenophora tritici-repentis

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/pyrenophora_tritici_repentis/Home.html

Pichia guilliermondii ATCC 6260

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/candida_guilliermondii/MultiHome.html

Candida tropicalis MYA-3404

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/candida_tropicalis/MultiHome.html

Clavispora lusitaniae ATCC 42702

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/candida_lusitaniae/MultiHome.html

Candida glabrata CBS138

/ Génolevures: http://cbi.labri.fr/Genolevures/download.php#cagl

Saccharomyces bayanus 623-6C

/ Broad Institute: http://www.broad.mit.edu/annotation/fungi/comp_yeasts/downloads.html

Saccharomyces castellii NRRL Y-12630

/ Washington University (WashU): http://genome.wustl.edu/sub_genome_group_index.cgi?GROUP=5

Saccharomyces cerevisiae YJM789

/ deposited in GenBank (project accession number AAFW00000000)

Saccharomyces kluyveri NRRL Y-12651

/ Washington University (WashU): http://genome.wustl.edu/genome.cgi?GENOME=Saccharomyces%20kluyveri&SECTION=assemblies

Saccharomyces kudriavzevii IFO 1802

/ Washington University (WashU): http://genome.wustl.edu/sub_genome_group_index.cgi?GROUP=5

Saccharomyces mikatae IFO 1815

/ Broad Institute: http://www.broad.mit.edu/annotation/fungi/comp_yeasts/downloads.html

Saccharomyces paradoxus NRRL Y-17217

/ Broad Institute: http://www.broad.mit.edu/annotation/fungi/comp_yeasts/downloads.html

Saccharomyces cerevisiae S288C

/ Sanger: http://www.sanger.ac.uk/Projects/S_cerevisiae/

Debaryomyces hansenii CBS767

/ Génolevures: http://cbi.labri.fr/Genolevures/download.php#deha

Kluyveromyces lactis NRRL Y-1140

/ Génolevures: http://cbi.labri.fr/Genolevures/download.php#klla

Candida albicans WO-1

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/candida_albicans/Home.html

Pichia stipitis CBS 6054

/ JGI: http://genome.jgi-psf.org/Picst3/

Yarrowia lipolytica CLIB122

/ Génolevures: http://cbi.labri.fr/Genolevures/download.php#yali

Cryptococcus neoformans H99

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/cryptococcus_neoformans/Home.html

Malassezia globosa CBS 8777

/ deposited in GenBank (project accession number AAYY00000000)

Coprinus cinereus okayama7#130

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/coprinus_cinereus/Home.html

Supplementary material Table 1 (continued). List of species genomes of which were analyzed in silico in present study and the sources of genomic sequences

Species

/ Organization: Web link

Phanerochaete chrysosporium RP-70

/ JGI: http://genome.jgi-psf.org/Phchr1/Phchr1.home.html

Postia placenta MAD-698

/ JGI: http://genome.jgi-psf.org/Pospl1/Pospl1.home.html

Sporobolomyces roseus

/ JGI: http://genome.jgi-psf.org/Sporo1/Sporo1.home.html

Puccinia graminis f. sp. tritici

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/puccinia_graminis

Laccaria bicolor S238N

/ JGI: http://genome.jgi-psf.org/laccaria/

Ustilago maydis 521

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/ustilago_maydis/Home.html

Batrachochytrium dendrobatidis JEL423

/ Broad Institute: http://www.broad.mit.edu/annotation/genome/batrachochytrium_dendrobatidis

Antonospora locustae

/ Antonospora locustaeDB: http://gmod.mbl.edu/perl/site/antonospora01?page=intro

Encephalitozoon cuniculi

/ EMBL:
http://www.ebi.ac.uk/2can/genomes/eukaryotes/Encephalitozoon_cuniculi.html