1Population Code: Phi, Phaseolin I Type; AW, Andean Wild; MW , Mesoamerican Wild
Table S1. List of the wild accessions of Phaseolus vulgaris used in this study. Information about the donor, BAPS group, country, department and county of collection, altitude, latitude, longitude and phaseolin type are also given whereavailable.
Population code1 / Label2 / Donor3 / BAPS group4 / Project code / Accession number / Synonyms / Country / Department, state or province / County, municipalityor district / Common name / Growth habit / Altitude(m a.s.l.) / Latitude (UTM) / Longitude (UTM) / Phaseolin type5 / Leg0446 / Leg1006 / Leg1336 / Leg2236 / PvSHP16 / Concatenate6
PhI / 054_W_phI_pr_cj / CIAT / B5 / 054* / G21245 / DGD-1962 / Peru / Cajamarca / Sa Miguel / Climbing / 1790 / -7.117 / -78.783 / I / X / X / X / X / X / X
PhI / 072_W_phI_ec_az / CIAT / / / 072* / G23581 / DGD-2765 / Ecuador / Azuay / Giron / Climbing / 1600 / -3.200 / -79.183 / I / X / X / X / X
PhI / 073_W_phI_ec_cm / CIAT / / / 073* / G23582 / DGD-2769 / Ecuador / Chimborazo / Alausi / Climbing / 1710 / -2.267 / -78.967 / I / X / X / X / X
PhI / 074_W_phI_pr_cj / CIAT / B5 / 074* / G23585 / DGD-2855 / Peru / Cajamarca / Chota / Frijol De Pichon / Climbing / 930 / -6.350 / -79.400 / I / X / X / X / X / X / X
PhI / 075_W_phI_pr_cj / CIAT / B5 / 075* / G23587 / DGD-2858 / Peru / Cajamarca / Chota / Frijol Del Pichon / Climbing / 1250 / -6.350 / -79.400 / I / X / X / X / X / X / X
PhI / 078_W_phI_ec_cm / CIAT / B5 / 078* / G23726 / DGD-2889 / Ecuador / Chimborazo / Pallatanga / Frejol Venado / Climbing / 1610 / -1.967 / -78.950 / I / X / X / X / X / X / X
AW / 006_W_A_ar / CIAT / B6 / 006 / G7469 / NI-029 / Argentina / Climbing / X / X / X / X / X / X
AW / 009_W_A_ar / CIAT / B6 / 009 / G10024 / NI-190 / Argentina / Climbing / X / X / X / X / X / X
AW / 013_W_A_pr_hu / CIAT / B6 / 013 / G12856 / PI260405, SMITH PV-1 / Peru / Huanuco / San Rafael / Climbing / -10.333 / -76.183 / X / X / X / X / X / X
AW / 031_W_A_ar_jy / CIAT / B6 / 031 / G19888 / DGD-623 / Argentina / Jujuy / Capital / Climbing / 1850 / -24.167 / -65.600 / T / X / X / X / X / X / X
AW / 032_W_A_ar_jy / CIAT / B6 / 032 / G19889 / DGD-624 / Argentina / Jujuy / Capital / Climbing / 1200 / -24.250 / -65.283 / T / X / X / X / X / X / X
AW / 033_W_A_ar_sa / CIAT / B6 / 033* / G19891 / DGD-628 / Argentina / Salta / Chicoana / Climbing / 1340 / -25.117 / -65.617 / T / X / X / X / X / X / X
AW / 034_W_A_ar_sa / CIAT / B6 / 034 / G19892 / DGD-629 / Argentina / Salta / Chicoana / Climbing / 1530 / -25.150 / -65.650 / X / X / X / X / X / X
AW / 035_W_A_ar_sa / CIAT / B6 / 035* / G19893 / DGD-630, NEEMA S-211/S-226 / Argentina / Salta / Caldera / Chaucha De Campo / Climbing / 1640 / -24.633 / -65.483 / H / X / X / X / X / X / X
AW / 036_W_A_ar_tu / CIAT / B6 / 036 / G19895 / DGD-637, NEEMA T-711/T-717 / Argentina / Tucuman / Trancas / Climbing / 1350 / -26.433 / -65.517 / J / X / X / X / X / X / X
AW / 037_W_A_ar_tu / CIAT / B6 / 037 / G19896 / DGD-639 / Argentina / Tucuman / Trancas / Sacha Poroto / Climbing / 1520 / -26.217 / -65.583 / C, T, C / X / X / X / X / X / X
AW / 038_W_A_ar_tu / CIAT / B6 / 038 / G19897 / DGD-643, NEEMA T-911/T-917 / Argentina / Tucuman / Chicligasta / Climbing / 1400 / -27.317 / -65.917 / J / X / X / X / X / X / X
AW / 039_W_A_ar_tu / CIAT / B6 / 039* / G19898 / DGD-644 / Argentina / Tucuman / Chicligasta / Climbing / 1650 / -27.333 / -65.950 / C / X / X / X / X / X / X
AW / 040_W_A_ar_tu / CIAT / B6 / 040 / G19901 / DGD-649 / Argentina / Tucuman / Tafi / Sacha Poroto / Climbing / 1900 / -26.933 / -65.700 / T / X / X / X / X / X / X
AW / 049_W_A_ar_jy / CIAT / B6 / 049 / G21194 / DGD-621 / Argentina / Jujuy / Capital / Climbing / 1480 / -24.117 / -65.417 / T,C,C / X / X / X / X / X / X
AW / 050_W_A_ar_jy / CIAT / B6 / 050 / G21197 / DGD-1711 / Argentina / Jujuy / Tumbaya / Climbing / 1850 / -24.050 / -65.450 / T / X / X / X / X / X / X
AW / 051_W_A_ar_jy / CIAT / B6 / 051 / G21198 / DGD-1712 / Argentina / Jujuy / Capital / Climbing / 1670 / -24.067 / -65.367 / T / X / X / X / X / X / X
AW / 052_W_A_ar_jy / CIAT / B6 / 052 / G21199 / DGD-1713 / Argentina / Jujuy / Tumbaya / Climbing / 1880 / -23.917 / -65.350 / X / X / X / X / X / X
AW / 053_W_A_ar_sa / CIAT / B6 / 053 / G21201 / DGD-1716 / Argentina / Salta / Santa Victoria / Poroto Chucaro / Climbing / 2600 / -22.250 / -65.000 / T / X / X / X / X / X / X
AW / 060_W_A_pr_ju / CIAT / B6 / 060* / G23420 / DGD-2147 / Peru / Junin / Tarma / Climbing / 1770 / -11.200 / -75.483 / X / X / X / X / X / X
AW / 061_W_A_pr_ju / CIAT / B6 / 061* / G23421 / DGD-2152 / Peru / Junin / Huancayo / Pichupa Numia / Climbing / 2650 / -12.017 / -74.883 / C / X / X / X / X / X / X
AW / 062_W_A_pr_ap / CIAT / B6 / 062* / G23422 / DGD-2156 / Peru / Apurimac / Aymaraes / Climbing / 2650 / -14.000 / -73.167 / C / X / X / X / X / X / X
AW / 063_W_A_pr_ap / CIAT / / / 063 / G23423C / DGD-2157 / Peru / Apurimac / Abancay / Aruincho / Climbing / 2050 / -13.850 / -72.967 / H,C,C / X / X / X / X
AW / 064_W_A_pr_ap / CIAT / B6 / 064* / G23426 / DGD-2295 / Peru / Apurimac / Andahuaylas / Climbing / 2440 / -13.617 / -73.200 / C / X / X / X / X / X / X
AW / 066_W_A_bl_cq / CIAT / B6 / 066 / G23444 / DGD-2497 / Bolivia / Chuquisaca / Tomina / Climbing / 2040 / -19.300 / -64.317 / T / X / X / X / X / X / X
AW / 067_W_A_bl_tj / CIAT / B6 / 067* / G23445 / DGD-2501 / Bolivia / Tarija / Mendez / Poroto Zorro / Climbing / 2100 / -21.533 / -64.867 / T / X / X / X / X / X / X
AW / 068_W_A_pr_cu / CIAT / B6 / 068* / G23455 / DGD-2581 / Peru / Cuzco / Anta / Climbing / 2080 / -13.500 / -72.483 / C, H, H / X / X / X / X / X / X
AW / 211_W_A_ar_tu / USDA / B6 / 211 / W617466 / PI638864 / Argentina / Tucuman / Climbing-Indeterminate / 1380 / -26.233 / -65.483 / X / X / X / X / X / X
AW / 213_W_A_ar_tu / USDA / B6 / 213 / W617468 / PI638866 / Argentina / Tucuman / Climbing-Indeterminate / 1560 / -27.817 / -65.783 / X / X / X / X / X / X
AW / 214_W_A_ar_tu / USDA / B6 / 214 / W617469 / PI638867 / Argentina / Tucuman / Climbing-Indeterminate / 1110 / -27.797 / -65.785 / X / X / X / X / X / X
AW / 215_W_A_ar_tu / USDA / B6 / 215 / W617470 / PI640964 / Argentina / Tucuman / Climbing-Indeterminate / 1140 / -26.383 / -65.467 / X / X / X / X / X / X
AW / 216_W_A_ar_tu / USDA / B6 / 216* / W617471 / PI638868 / Argentina / Tucuman / Climbing-Indeterminate / 1380 / -26.383 / -65.533 / X / X / X / X / X / X
AW / 217_W_A_ar_tu / USDA / B6 / 217* / W617472 / PI638869 / Argentina / Tucuman / Climbing-Indeterminate / 2070 / -26.950 / -65.700 / X / X / X / X / X / X
AW / 218_W_A_ar_sa / USDA / B6 / 218 / W617473 / PI638870 / Argentina / Salta / Climbing-Indeterminate / 1350 / -26.100 / -65.600 / X / X / X / X / X / X
AW / 219_W_A_ar_sa / USDA / B6 / 219 / W617474 / PI640965 / Argentina / Salta / Climbing-Indeterminate / 1380 / -25.161 / -65.611 / X / X / X / X / X / X
AW / 220_W_A_ar_sa / USDA / B6 / 220* / W617475 / PI638871 / Argentina / Salta / Climbing-Indeterminate / 1470 / -25.167 / -65.617 / X / X / X / X / X / X
AW / 221_W_A_ar_sa / USDA / B6 / 221* / W617476 / PI638872 / Argentina / Salta / Climbing-Indeterminate / 1530 / -25.166 / -65.649 / X / X / X / X / X / X
AW / 222_W_A_ar_sa / USDA / B6 / 222 / W617478 / PI638873 / Argentina / Salta / Climbing-Indeterminate / 1620 / -24.896 / -65.801 / X / X / X / X / X / X
AW / 223_W_A_ar_jy / USDA / / / 223 / W617481 / PI638874 / Argentina / Jujuy / Climbing-Indeterminate / 1650 / -22.267 / -64.683 / X / X / X / X
AW / 226_W_A_ar_jy / USDA / B6 / 226 / W617486 / PI638875 / Argentina / Jujuy / Los Toldos / 1650 / -22.267 / -64.683 / X / X / X / X / X / X
AW / 232_W_A_ar_sa / USDA / B6 / 232* / W617499 / Argentina / Salta / Climbing-Indeterminate / -24.900 / -65.484 / X / X / X / X / X / X
AW / 233_W_A_ar_sa / USDA / / / 233 / W617500 / PI640966 / Argentina / Salta / Climbing-Indeterminate / -24.650 / -65.367 / X / X / X / X
AW / 234_W_A_ar_sa / USDA / / / 234 / W617501 / PI640967 / Argentina / Salta / Climbing-Indeterminate / -24.650 / -65.367 / X / X / X / X
AW / 235_W_A_ar_sa / USDA / B6 / 235 / W617502 / PI640968 / Argentina / Salta / San Lorenzo / Climbing-Indeterminate / -24.717 / -65.483 / X / X / X / X / X / X
AW / 242_W_A_bl_cq / USDA / B6 / 242* / W618821 / PI638897, DGD3038 / Bolivia / Chuquisaca / Tomina / 2140 / -19.283 / -64.333 / X / X / X / X / X / X
AW / 243_W_A_bl_cq / USDA / B6 / 243 / W618826 / PI638898, DGD3044 / Bolivia / Chuquisaca / 2140 / -19.282 / -64.333 / X / X / X / X / X / X
AW / 511_W_A_bl_cq / USDA / B6 / 511 / W618819 / Bolivia / Chuquisaca / 2140 / -19.283 / -64.333 / X / X / X / X / X / X
AW / 512_W_A_ar / USDA / B6 / 512 / W617002 / Argentina / Poroto del Zorro / 1520 / -23.482 / -64.947 / X / X / X / X / X / X
MW / 045_W_COL_cn / CIAT / / / 045* / G21113 / LEROI COL-14, NI-922 / Colombia / Cundinamarca / Ubaque / Climbing / 1900 / 4.483 / -73.933 / CH / X / X / X / X
MW / 046_W_COL_cn / CIAT / B1 / 046 / G21115 / LEROI COL-23, NI-926 / Colombia / Cundinamarca / Choachi / Climbing / 1800 / 4.533 / -73.917 / S, CH / X / X / X / X / X / X
MW / 047_W_COL_cn / CIAT / B1 / 047* / G21117 / LEROI COL-28, NI-937 / Colombia / Cundinamarca / Tena / Climbing / 1560 / 4.667 / -74.400 / CH / X / X / X / X / X / X
MW / 055_W_COL_cn / CIAT / B1 / 055 / G22303 / LEROI COL-22, NI-1141 / Colombia / Cundinamarca / Choachi / Climbing / 1900 / 4.533 / -73.917 / CH / X / X / X / X / X / X
MW / 056_W_COL_cn / CIAT / / / 056 / G22304 / LEROI COL-13, NI-1142 / Colombia / Cundinamarca / Ubaque / Climbing / 1750 / 4.483 / -73.933 / X / X / X / X
MW / 069_W_COL_cn / CIAT / B1 / 069* / G23462 / LEROI COL-15, NI-1256, X-636 / Colombia / Cundinamarca / Macheta / Climbing / 1900 / 5.083 / -73.617 / B / X / X / X / X / X / X
MW / 001_W_M_mx_nt / CIAT / / / 001 / G2771 / GENTRY 22274; PI318702 / Mexico / Nayarit / Jomulco / Climbing / 1050 / 21.167 / -104.367 / X / X / X / X
MW / 007_W_M_mx_ja / CIAT / B1 / 007 / G9989 / HM7395-BULK / Mexico / Jalisco / Mascota / Climbing / 1400 / 20.500 / -104.817 / X / X / X / X / X / X
MW / 010_W_M_mx_mi / CIAT / B4 / 010 / G11050 / DGD-439 / Mexico / Michoacan / Morelia / Climbing / 2040 / 19.683 / -101.267 / X / X / X / X / X / X
MW / 011_W_M_mx_ja / CIAT / / / 011 / G11051 / DGD-451 / Mexico / Jalisco / Zapotan / Climbing / 1650 / 20.767 / -103.400 / X / X / X / X
MW / 012_W_M_mx_ja / CIAT / B2 / 012 / G11056 / DGD-490 / Mexico / Jalisco / Mascota / Climbing / 1380 / 20.567 / -104.767 / X / X / X / X / X / X
MW / 019_W_M_mx_ja / CIAT / B3 / 019 / G12922 / M7278-A, PI417683 / Mexico / Jalisco / Arandas / Coyote / Climbing / 1829 / 20.700 / -102.350 / X / X / X / X / X / X
MW / 021_W_M_mx_ja / CIAT / / / 021 / G12927 / M7278-G, PI417689 / Mexico / Jalisco / Arandas / Coyote / Climbing / 1831 / 20.700 / -102.350 / X / X / X / X
MW / 023_W_M_mx_ja / CIAT / B3 / 023 / G12949 / M7408-P, PI417775 / Mexico / Jalisco / Arandas / Climbing / 1833 / 20.667 / -102.383 / M / X / X / X / X / X / X
MW / 024_W_M_mx_ja / CIAT / / / 024* / G12957 / M7424-C, PI417786 / Mexico / Jalisco / Santa Maria del Valle / Climbing-Determinate / 2134 / 20.900 / -102.367 / X / X / X
MW / 025_W_M_mx_ja / CIAT / B3 / 025* / G12979 / M7439T / Mexico / Jalisco / Ayutla / Climbing / 20.117 / -104.367 / X / X / X / X / X / X
MW / 041_W_M_gt_sc / CIAT / B1 / 041 / G19906 / DGD-1610 / Guatemala / Sacatepequez / Santa Maria de Jesus / Climbing / 1550 / 14.450 / -90.700 / S / X / X / X / X / X / X
MW / 042_W_M_gt_sc / CIAT / B1 / 042* / G19907 / DGD-1611 / Guatemala / Sacatepequez / Alotenango / Climbing / 1280 / 14.450 / -90.817 / M / X / X / X / X / X / X
MW / 043_W_M_gt_sc / CIAT / B1 / 043* / G19909 / DGD-1619 / Guatemala / Sacatepequez / San Miguel Duenas / Climbing / 1820 / 14.550 / -90.833 / X / X / X / X / X / X
MW / 044_W_M_mx_pu / CIAT / B2 / 044 / G20515 / M8137B-1 / Mexico / Puebla / Tetela de Ocampo / Climbing / 19.800 / -97.783 / X / X / X / X / X / X
MW / 057_W_M_mx_ci / CIAT / B1 / 057* / G22837 / GN 84127/BB 8480, P16-001 / Mexico / Chihuahua / San Pablo Balleza / Climbing / 1750 / 26.933 / -106.417 / X / X / X / X / X / X
MW / 058_W_M_mx_qu / CIAT / B3 / 058 / G23415A / DGD-2077 / Mexico / Queretaro / Pinal de Amoles / Frijol De Raton / Climbing / 1190 / 21.133 / -99.617 / X / X / X / X / X / X
MW / 059_W_M_cr_sj / CIAT / / / 059* / G23418 / DGD-2111 / Costa Rica / San Jose / Aserri / Climbing / 1560 / 9.867 / -84.117 / X / X / X / X
MW / 065_W_M_mx_pu / CIAT / B2 / 065* / G23429 / DGD-2325 / Mexico / Puebla / Sta Isabel Cholula / Climbing / 1430 / 18.967 / -98.383 / X / X / X / X / X / X
MW / 070_W_M_mx_ci / CIAT / B1 / 070* / G23463 / GN 84154, L 625 / Mexico / Chihuahua / Yepachic / Bush-Indeterminate / 1530 / 28.333 / -108.500 / S / X / X / X / X / X / X
MW / 071_W_M_mx_ox / CIAT / / / 071 / G23558 / OAXACA 112 / Mexico / Oaxaca / Sto.Dom.Tehuantepec / Climbing-Determinate / 35 / 16.333 / -95.233 / X / X / X / X
MW / 076_W_M_mx_pu / CIAT / B3 / 076* / G23652 / M2058 / Mexico / Puebla / Puebla / Climbing / 18.506 / -97.717 / X / X / X / X / X / X
MW / 079_W_M_mx_ja / CIAT / / / 079 / G24366 / JSG & LOS-150 / Mexico / Jalisco / Acatlan / Climbing / 1550 / 20.483 / -103.400 / X / X / X / X
MW / 080_W_M_mx_ox / CIAT / B1 / 080* / G24378 / JSG & LOS-199 / Mexico / Oaxaca / Sola De Vega / Climbing / 1250 / 16.040 / -97.083 / X / X / X / X / X / X
MW / 081_W_M_mx_ox / CIAT / B2 / 081* / G24571 / JSMM-4002 / Mexico / Oaxaca / Tilapa / Climbing / 1300 / 17.167 / -97.983 / X / X / X / X / X / X
MW / 082_W_M_mx_ox / CIAT / B2 / 082 / G24572 / JSMM-4006 / Mexico / Oaxaca / San Jose / Climbing / 1780 / 15.983 / -96.517 / X / X / X / X / X / X
MW / 083_W_M_mx_ch / CIAT / B2 / 083 / G24599 / JAG-180 / Mexico / Chiapas / Teopisca / Climbing / 1100 / 16.483 / -92.517 / X / X / X / X / X / X
MW / 084_W_M_mx_hi / CIAT / B2 / 084 / G50415 / JAG-209 / Mexico / Hidalgo / Lolotla / Negro Hidalgo / Climbing / 20.850 / -98.717 / X / X / X / X / X / X
MW / 085_W_M_mx_du / CIAT / B1 / 085* / G50899 / LEROI MEX-26, NI-1144 / Mexico / Durango / El Saltito / Climbing / 1650 / 23.783 / -105.367 / X / X / X / X / X / X
MW / 179_W_M_mx_ja / USDA / B3 / 179* / PI318696 / GENTRY 22199,G12865 / Mexico / Jalisco / Tecalitlan / Climbing-Indeterminate / 1219 / 19.333 / -103.250 / X / X / X / X / X / X
MW / 187_W_M_mx_mo / USDA / Admixed / 187* / PI325677 / GENTRY 22404, G12872 / Mexico / Morelos / Tepoztlan / Climbing-Indeterminate / 1828 / 18.967 / -99.100 / X / X / X / X / X / X
MW / 205_W_M_mx_ja / USDA / / / 205* / PI417775 / G12949, M7408-P / Mexico / Jalisco / Climbing / 1829 / 20.640 / -102.410 / X / X / X / X
MW / 210_W_M_cr_pt / USDA / / / 210 / W612107 / CR-93-004 / Costa Rica / Puntarenas / Coto Brus / 1180 / 8.950 / -83.083 / X / X
MW / 259_W_M_mx_mo / CIAT / B4 / 259* / G12873 / PI325678, GENTRY22492 / Mexico / Morelos / Huitzilac / Climbing-Indeterminate / 1981 / 19.000 / -99.250 / X / X / X / X / X / X
MW / 501_W_M_mx_ci / USDA / B3 / 501 / PI417671 / M7267-A / Mexico / Chihuahua / 28.600 / -107.167 / X / X / X / X / X / X
MW / 502_W_M_mx_nt / USDA / / / 502 / PI318698 / G12867, GENTRY22234 / Mexico / Nayarit / Ahuacatlan / Frijolillo / Climbing / 900 / 21.083 / -104.500 / X / X / X
MW / 503_W_M_mx / USDA / B3 / 503 / PI417770 / Mexico / 2000 / 20.667 / -102.383 / X / X / X / X / X / X
MW / 504_W_M_mx_mo / USDA / B4 / 504 / PI535430 / Mexico / Morelos / 1725 / 18.983 / -99.100 / X / X / X / X / X / X
MW / 505_W_M_mx_ja / USDA / B1 / 505 / PI535409 / Mexico / Jalisco / 2000 / 19.917 / -103.333 / X / X / X / X / X / X
MW / 506_W_M_mx_mo / USDA / B4 / 506 / PI535450 / Mexico / Morelos / 1775 / 18.983 / -99.100 / X / X / X / X / X / X
MW / 507_W_M_gt / USDA / B1 / 507 / W620522 / Guatemala / 1730 / 14.767 / -91.500 / X / X / X / X / X / X
MW / 508_W_M_gt / USDA / B1 / 508 / W620523 / Guatemala / 1760 / 14.767 / -91.517 / X / X / X / X / X / X
MW / 509_W_M_gt / USDA / B1 / 509 / W620516 / Guatemala / 1180 / 15.667 / -91.783 / X / X / X / X / X / X
MW / 510_W_M_es_ah / USDA / B1 / 510 / PI201013 / El Salvador / Ahuachapan / Ahuachapan / Climbing / 800 / 13.917 / -89.850 / X / X / X / X / X / X
* Accessions for which the PvSHP1 sequences included in the present study were available from the study of Nanni et al. 2011;
1Population code: PhI, Phaseolin I type; AW, Andean wild; MW, Mesoamerican wild.
2 For each accession of P. vulgaris, the first letter of the label indicates the form (W = wild), the second indicates the gene pool (M = Mesoamerican; A = Andean; ph_I = phaseolin I type), the third and fourth indicate the country of origin and the department, respectively.Country codes: Argentina (ar); Bolivia (bl); Colombia (COL); Costa Rica (cr); Ecuador (ec); El Salvador (es); Guatemala (gt); Mexico (mx); Peru (pr); Department codes: Ahuachapan(ah); Apurimac (ap); Azuay (az); Cajamarca (cj); Chiapas (ch); Chimborazo (cm); Chuquisaca (cq); Cihuahua (ci); Cundinamarca (cn); Cuzco (cu); Durango (du); Hidalgo (hi); Huanuco (hu); Jalisco (ja); Jujuy (jy); Junin (ju); Michoacan (mi); Morelos (mo); Nayarit (nt); Oaxaca (ox); Puebla (pu); Puntarenas (pt); Queretaro (qu); Sacatepequez (sc); Salta (sa); San Jose (sj); Tarija (tj); Tucuman (tu).
3CIAT, International Centre for Tropical Agriculture; USDA, United States Department of Agriculture.
4 The BAPS analysis was performed using the concatenate data for a total of 84 accessions.
5 Type I phaseolin is considered an ancestral seed storage protein, as the type I phaseolin gene does not carry the tandem direct repeats that are present in Mesoamerican and Andean accessions. With the consideration that duplications that generate tandem direct repeats are more likely than deletions that specifically eliminate a member of a tandem direct repeat, Kami et al. (1995) suggested that type I phaseolin is ancestral to the other phaseolin sequences of P. vulgaris. This arises because duplications can occur in many locations along the sequence, whereas deletions can occur only at the site of the tandem direct repeats.
6The 'X' indicates the availability of high-quality sequence data.