Tables1phenotypic Characteristics of 12 Species of the Genus Aeromicrobium

Tables1phenotypic Characteristics of 12 Species of the Genus Aeromicrobium

TableS1Phenotypic characteristics of 12 species of the genus Aeromicrobium.

Taxa: 1, A. halocynthiae(Kim et al. 2010);2, A. ginsengisoli(Kimet al., 2008); 3, A. erythreum (Milleret al., 1991; Cuiet al., 2007); 4, A. ponti (Lee & Lee, 2008); 5, A. alkaliterrae (Yoonet al., 2005; Kim et al., 2008); 6, A. marinum (Brunset al., 2003; Yoon et al., 2005; Kim et al., 2008); 7, A. panaciterrae(Cuiet al., 2007); 8, A. tamlense (Lee & Kim, 2007); 9, A. fastidiosum(Collins & Stackebrandt, 1989; Tamura & Yokota, 1994; Yoonet al., 2005; Cui et al., 2007); 10, A. flavum(Tang et al., 2008). 11, A. massiliense (Ramasamy et al. 2012), 12, A. camelliae(Niu et al., 2015).

+, Positive reaction; w, weakly positive; -, negative reaction; ND, not determined.

Physical characteristics / 1† / 2† / 3† / 4† / 5† / 6† / 7† / 8† / 9† / 10† / 11* / 12†
Cell morphology / Rod / Cocci / Rod / Rod / Rod / Rod / Rod / Rod / Rod / Rod / Rod / Rod
Motility / - / - / - / - / - / - / - / - / + / - / + / -
Optimum temperature / 25 / 30 / 35 / 30 / 25 / 25 / ND / 30 / 25 / 30 / 28 / 30
pH range / 5-10 / 5-8 / 5-9 / 4-12 / 6-11 / 5-9 / 5-8 / 5-10 / 5-8 / 5-10 / 5-8 / 5-10
Oxidase / - / + / + / - / - / - / - / - / + / + / + / -
Catalase / + / - / + / + / + / + / - / + / + / + / - / +
Urease / - / - / - / - / - / - / - / - / - / w / - / -
Utilization of:
Trehalose / + / + / + / + / + / + / + / + / + / + / - / +
Acetate / + / + / + / + / - / + / + / + / + / ND / - / +
L-Arabinose / + / + / + / + / + / - / - / - / + / - / - / -
Citrate / - / - / ND / + / - / - / - / - / + / ND / - / -
D-fructose / + / + / + / + / - / - / - / + / + / + / - / +
D-glucose / + / + / + / + / + / - / + / + / + / + / + / +
D-mannose / + / + / - / + / - / - / + / + / + / - / - / -
D-mannitol / + / - / - / - / w / + / - / - / - / ND / - / -
D-maltose / + / + / - / + / + / - / + / + / - / + / - / w
L-rhamnose / - / + / - / - / + / - / - / - / - / - / - / -
D-salicin / - / - / - / w / + / - / + / - / - / - / - / -
Sucrose / + / + / + / + / + / - / + / + / + / + / - / +
D-xylose / + / + / + / + / - / - / - / - / + / - / - / -
Enzyme activities
Acid phosphatase / - / + / + / + / + / - / + / + / + / - / - / +
Alkaline phosphatase / - / - / + / + / - / - / + / + / + / - / - / +
Esterase (C4) / + / + / w / + / + / + / w / - / + / + / + / +
a-Glucosidase / w / + / + / + / + / - / - / + / + / + / -
Naphthol-AS-BIphosphohydrolase / w / + / - / - / + / w / + / w / w / - / - / +
Trypsin / - / - / w / - / - / - / - / w / - / - / + / +
Quinone / MK-9 / MK-9 / ND / MK-9 / MK-9 / MK-9 / MK-9 / MK-9 / MK-9 / MK-9 / MK-7, MK-9 / MK-8, MK-9
DNA G+C content (mol%) / 75.9% / 66.8% / 71% / 74% / 71.5% / 70.6% / 65.5% / 72.7% / 71% / 73.3% / 72.4% / 66%

* The results for taxa 12 were derived from our experiments.

† All data were from the above-mentioned literature for each type strain.

Table S2BiologGEN III microplate oxidation of carbon resource results of strain YIMY47T and the related referencestrain. Taxa: 1YIMY47T, 2. A. massilienseJC14T, + positive reaction, - negative reaction.

Characteristic / 1 / 2 / Characteristic / 1 / 2
D-raffinose / - / - / Citric acid / - / -
α-D-glucose / + / + / α-keto-butyric acid / - / -
D-sorbitol / - / - / Gentiobiose / - / -
Gelatin / - / + / N-acetyl-D-glucosamine / + / +
Pectin / - / - / D-fucose / - / -
p-hydroxy-phenylacetic acid / - / - / D-glucose-6-PO4 / - / -
Dextrin / - / - / L-glutamic acid / - / -
α-D-lactose / - / - / Glucuronamide / + / -
D-mannose / - / + / α-keto-glutaric acid / - / -
D-mannitol / - / + / Acetoacetic acid / - / -
Glycyl-L-proline / - / - / Sucrose / - / -
D-galacturonic acid / - / - / N-acetyl-β-D mannosamine / - / -
Methyl pyruvate / - / - / L-fucose / - / -
γ-amino-butryric acid / - / - / D-fructose-6-PO4 / - / -
D-maltose / - / - / L-histidine / - / -
D-melibiose / - / - / Mucic acid / - / -
D-fructose / - / - / D-malic acid / - / -
D-arabitol / - / - / Propionic acid / - / -
L-alanine / - / - / D-turanose / - / -
L-galactonic acid lactone / - / - / N-acetyl-D-galactosamine / - / -
D-lactic acid methyl ester / - / - / L-rhamnose / - / -
α-hydroxy-butyric acid / - / - / D-aspartic acid / - / -
D-trehalose / - / - / L-pyroglutamic acid / - / -
β-methyl-D-glucoside / - / - / Quinic acid / - / -
D-galactose / + / - / L-malic acid / - / -
Myo-inositol / - / - / Acetic acid / - / -
L-arginine / - / - / Stachyose / - / -
D-gluconic acid / - / - / N-acetyl neuraminic acid / - / -
L-lactic acid / - / - / Inosine / - / -
β-hydroxy-D,L butyric acid / - / - / D-serine / - / -
D-cellobiose / - / - / L-serine / - / -
D-salicin / - / - / D-saccharic acid / - / -
3-methyl glucose / - / - / Bromo-succinic acid / - / -
Glycerol / - / - / Formic acid / - / -
L-aspartic acid / - / +

Table S3Biolog GEN III microplate chemical sensitivity assay results of strain YIMY47T and the related reference strain. Taxa: 1YIMY47T, 2. A. massilienseJC14T, + positive reaction, - negative reaction.

Compounds / 1 / 2
1% sodium lactate / - / +
Troleandomycin / - / +
Lincomycin / - / +
Vancomycin / - / +
Nalidixic acid / - / -
Aztreonam / - / +
Fusidic acid / - / +
RifamycinSV / + / +
Guanidine HCl / - / -
Tetrazolium violet / + / +
Lithium chloride / - / -
Sodium butyrate / - / +
D-serine / + / -
Minocycline / - / -
Niaproof / - / -
Tetrazolium blue / - / +
Potassium tellurite / + / +
Sodium bromate / - / -

Table S4 Cellular fatty acid compositions (%) of strain YIMY47T and reference strain of the most closely related species of the genusAeromicrobium.Taxa: 1YIMY47T, 2. A. massilienseJC14T,ND: not detected. All data are from this study.

Fatty acids / 1 / 2
C14:0 / 0.3 / 0.5
iso-C16:0 / - / 0.49
C16:1ω9c / 0.41 / 0.81
C16:0 / 14.51 / 12.07
C15:02OH / 0.2 / 0.42
C17:1ω6c / - / 0.31
C17:1ω8c / 4.66 / 3.42
C17:0 / 4.55 / 2.48
C16:02OH / 7.73 / 7.16
10-methylC17:0 / 0.91 / 1.7
C18:1ω9c / 45 / 37.43
iso-C18:0 / - / 0.74
C18:0 / 2.73 / 4.4
C17:02OH / 2.23 / 1.24
10-methylC18:0 / 12.17 / 22.83
C18:12OH / 0.09 / -
C18:02OH / 0.92 / 0.92
C20:4ω6,9,12,15c / 0.03 / -
Sum In Feature 3* / 1.7 / 1.34
Sum In Feature 6* / 1.09 / 0.44
Sum In Feature 7* / 0.12 / 0.33
Sum In Feature 8* / 0.48 / 0.59
Sum In Feature 9* / 0.18 / 0.39

*Summed features are groups of two or three fatty acids that cannot be separated by GLC with the MIDI system. Summed feature 3 comprised C16:1ω7c and/or C16:1ω6c; Summed Feature 4comprised iso-I C17:1and/or anteiso-B C17:1; Summed Feature 6 comprised C19:1ω11c and/or C19:1ω9c; Summed Feature 7 comprised unknown 18.846 and/or C19:1ω6c; Summed Feature 8 comprised C18:1ω7c or C18:1ω6c; Summed Feature 9 comprised iso-C17:1ω9c or 10-methyl C16:0

Table S5API assay results of strain YIMY47Tand reference strain of the most closely related species of the genusAeromicrobium. All data are from this study.All of the strains,no acid is produced according to the results from the API 50CH tests.

Taxa: 1 YIMY47T, 2. A. massilienseJC14T, +, positive reaction; -, negative reaction;w,weakly positive.

Test / 1 / 2 / Test / 1 / 2
Enzyme assays (API ZYM) / 20NE
Alkaline phosphatase / + / - / Nitrate reduction / - / +
Leucine arylamidase / + / - / Indole production / - / -
Valinearylamidase / + / w / gluconateproduction / - / -
Cystinearylamidase / + / - / Arginine dihydrolase / +
Trypsin / + / + / Urease / - / -
Acid phosphatase / + / - / Glucosaccharase / - / +
Naphthol-AS-BI-phosphohydrolase / + / - / Gelatinase / - / +
α-glucosidase / - / + / β-Galactosidase / + / +
Chymotrypsin / + / Glucose utilization / + / +
Esterase (C4) / w / + / Arabinoseutilization / w / -
Esterase lipase (C8) / w / + / Mannoseutilization / - / -
Lipase (C14) / w / - / Mannitolutilization / + / -
α-galactosidase / - / - / Maltoseutilization / w / +
β-galactosidase / - / + / N-acetyl-D-glucosamineutilization / + / +
β-glucosidase / - / + / Gluconateutilization / + / +
N-acetyl-β-glucosaminidase / - / - / Capric acidutilization / + / +
α-mannosidase / - / - / Adipic acidutilization / + / +
β-fucosidase / - / - / Malic acidutilization / + / +
β-glucuronidase / - / w / Citrate utilization / + / +
Phenylacetic acidutilization / + / +

Fig. S1Scanning electron micrograph of strain YIMY47Tafter growth on TSA medium at 30°C for 4 days, Bar, 5μm.

Fig. S2 Two-dimensional TLC analysis of the polar lipids withstrain YIMY47T and A.massilienseJC14T.

Abbreviations: DPGdiphosphatidylglycerol, PGphosphatidylglycerol,PIphosphatidylinositol,PL unknown phospholipid.

Fig. S3 Maximum-likelihood phylogenetic tree based on 16SrRNA gene sequences showing the relationships between strain YIMY47T and other members of the family Aeromicrobium. Bootstrap values (≥ 50 %) based on 1000 replications are shown at branch nodes. Bar, 0.01 substitutions per nucleotide position.

Fig. S4 Maximum-parsimony phylogenetic tree based on 16SrRNA gene sequences showing the relationships between strain YIMY47T and members of the family Aeromicrobium. Bootstrap values (≥ 50 %) based on 1000 replications are shown at branch nodes. Bar, 0.01 substitutions per nucleotide position.

YIMY47 (16SrRNA), GenBank Accession Number: KT023073

AGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAGCGGTAAGGCCCCTTTCGGGGGGTACACGAGCGGCGAACGGGTGAGTAACACGTGAGCAACCTGCCCTTCTCTTTGGGATAACCAGTGGAAACGCTGGCTAATACCGAATATGACCGCCTTGGGCATCCGGGGTGGTGGAAAGTTCCGGCGGAGAAGGATGGGCTCGCGGCCTATCAGCTTGTTGGTGAGGTAATGGCTCACCAAGGCGACGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCACCGACGAAGCGAAAGTGACGGTAGGTGCAGAAGAAGGACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTCCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGCTCGTAGGCGGTCTGTCGCGTCGGGAGTGAAAACTCGGGGCTTAACCCCGAGCGTGCTTCCGATACGGGCAGACTAGAGGGATGCAGGGGAGAATGGAATTCCTGGTGTAGCGGTGGAATGCGCAGATATCAGGAGGAACACCGGTGGCGAAGGCGGTTCTCTGGGCATTTCCTGACGCTGAGGAGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGTTGGGCGCTAGGTGTGGGGACCTTCCACGGTTTCCGTGCCGCAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGCTGATTAATTCGATGCAACGCGAAGAACCTTACCTGGGTTTGACATATGCCGGAAAGCTGCAGAGATGTGGCCTCCCTTGTGGCCGGTATACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTCCTATGTTGCCAGCACGTGATGGTGGGGACTCATAGGAGACTGCCGGGGTCAACTCGGAGGAAGGTGGGGATGACGTCAAGTCTTCATGCCCCTTATGTCCAGGGCTTCAAGCATGCTACAATGGCCGGTACAATGGGCTGCGAAATCGTAAGGTGGAGCGAATCCCAAAAAGCCGGTCTCAGTTCGGATTGGGGTCTGCAACTCGACCCCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACGTCATGAAAGTCGGCAACACCCGAAGCCGGTGGCCTAACCCTTGTGGGAGGAGCCGTCGAAGGTGGGGCTGGCGATTGGGACGAAGTCGTAACAAGGTAGCCGTAC