Table 2. Prediction of cre-boxes in L. lactis IL1403

putative upstream cre-boxA / putative downstream cre-boxB / putative internal cre-boxC
1.acmB45.yigC
2.acpD46.ykhE
3.butB47.yldC
4.ccpAE48.yljB
5.clsA49.ynaD
6.coaAD50.yniGD
7.cspD51.yobA
8.dapA52.ypcB
9.dexC53.ypdC
10.dfrA54.ypiL
11.dinF55.ypjB
12.enoA56.yqeA
13.fbp57.yrcA
14.ftsE58.ysjE
15.glgP59.ytbC
16.kdgR60.yugA
17.mreC61.yuiE
18.mycA62.ywaB
19.noxEE
20.pbp2BD
21.pfkE
22.pgiA
23.pmg
24.prsA
25.pstE
26.pyrH
27.pyrR
28rheA
29.rgrA
30.rmaG
31.secA
32.tkt
33.typA
34.xptD
35.yabC
36.yafD
37.ycdJ
38.ycjH
39.yedED
40.yeeE
41.yfhI
42.yfiC
43.ygdAD
44.yghBD / 1.arcA
2.bglRD
3.bmpA
4.enoB
5.galP*E
6.gpdA
7.lacR
8.llrC
9.msmK
10.noxB
11.otcA
12.panE
13.pmi
14.ptcB
15.rbsRD
16.sodA
17.yabC
18.ybcG
19.ybeA
20.ybhD
21.ybhE
22.yceG
23.ycfD
24.ycgF
25.ydaG
26.yffAD
27.yfhB
28.yfiE
29.ygaI
30.ygbE
31.yhcG
32.yhdC
33.yheD
34.yjjC
35.yjjF
36.ylbB
37.yleBD
38.ylgC
39.ypfD
40.yrfA
41.yrfE
42.yugB
43.yuhD
44.ywbA / 1.asd
2.busAAD
3.busRD
4.dltA
5.mycA
6.ptnAB
5.yiiH
6.ylcD
7.yrgE
8.yujC
9.yvaA
10.ywcC

A.Putative cre-box identified upstream of promoter elements (-35 and -10).

B.Putative cre-box identified downstream of promoter elements (-35 and -10).

C.Putative cre-box identified within the promoter elements (-35 and -10).

D.Homologous (protein level [e values < 10-49]) to CcpA-regulated ORFs in B. subtilis [40].

E.L. lactis genes known to be regulated by CcpA [36-38].

galP is marked with an asterisk to indicate that its ORF in L. lactis IL1403 contains a frame shift and is therefore not-functional [30].