BIOCHEMISTRY & MOLECULAR BIOLOGY
2011 RESEARCH PUBLICATIONS
1. Actis, G.C., F. Rosina, and I.R. Mackay, REVIEW: Inflammatory bowel disease: beyond the boundaries of the bowel. Expert Rev Gastroenterol Hepatol, 2011. 5(3): p. 401-10 [BCH]
2. Alcock, F., C.T. Webb, P. Dolezal, V. Hewitt, M. Shingu-Vasquez, V.A. Likic, A. Traven, and T. Lithgow, A Small Tim Homohexamer in the Relict Mitochondrion of Cryptosporidium. Mol Biol Evol, 2011. E-pub: p. 113-122 Category: Biochemistry & Molecular Biology Impact Factor: 5.510 Ranking: 49/286 [BCH]
3. Ali, F., M.J. Rowley, B. Jayakrishnan, S. Teuber, M.E. Gershwin, and I.R. Mackay, Stiff-person Syndrome (SPS) and anti-GAD-related CNS Degenerations: Protean Additions to the Autoimmune Central Neuropathies. J Autoimm, 2011. 37: p. 79-87 Category: Immunology Impact Factor: 8.136 Ranking: 12/134 [BCH]
4. Alikhan, M.A., C.V. Jones, T.M. Williams, A.G. Beckhouse, A.L. Fletcher, M.M. Kett, S. Sakkal, C.S. Samuel, R.G. Ramsay, J.A. Deane, C.A. Wells, M.H. Little, D.A. Hume, and S.D. Ricardo, Colony-Stimulating Factor (CSF)-1 Promotes Kidney Growth and Repair via Alteration of Macrophage Responses. Am J Pathol, 2011. 179(3): p. 1243-1256 Category: Pathology Impact Factor: 5.224 Ranking: 4/76 [MISCL,PHY,BCH]
5. Allwood, E.M., R.J. Devenish, M. Prescott, B. Adler, and J.D. Boyce, REVIEW: Strategies for Intracellular Survival of Burkholderia pseudomallei. Front Microbiol, 2011. 2(170): p. 1-19 [BCH,MICRO]
6. Alonzo III, F., B. Xayarath, J.C. Whisstock, and N.E. Freitag, Functional analysis of the Listeria monocytogenes secretion chaperone PrsA2 and its multiple contributions to bacterial virulence. Mol Microbiol, 2011. 80(6): p. 1530-1548 Category: Biochemistry & Molecular Biology Impact Factor: 4.819 Ranking: 60/286 [BCH]
7. Alvisi, G., O. Marin, G. Pari, M. Mancini, S. Avanzi, A. Loregian, D.A. Jans, and A. Ripalti, Multiple phosphorylation sites at the C-terminus regulate nuclear import of HCMV DNA polymerase processivity factor ppUL44. Virology, 2011. 417(2): p. 259-267 Category: Virology Impact Factor: 3.305 Ranking: 12/32 [BCH]
8. Ambaye, N.D., S. Pero, M.J. Gunzburg, M.Y. Yap, D.J. Clayton, M.P. Del Borgo, P. Perlmutter, M.I. Aguilar, G.S. Shukla, E. Peletskaya, M.M. Cookson, D.N. Krag, M.C. Wilce, and J.A. Wilce, Structural basis of binding by cyclic non-phosphorylated peptide antagonists of GRB7 implicated in breast cancer progression. J Mol Biol, 2011. 412(3): p. 397-411 Category: Biochemistry & Molecular Biology Impact Factor: 4.008 Ranking: 86/286 [BCH]
9. Ang, C.S., J. Rothacker, H. Patsiouras, P. Gibbs, A.W. Burgess, and E.C. Nice, Use of multiple reaction monitoring for multiplex analysis of colorectal cancer-associated proteins in human feces. Electrophoresis, 2011. 32(15): p. 1926-1938 Category:Biochemical Research Methods Impact Factor: 3.569 Ranking: 21/71 [BCH]
10. Archbold, J.K., J.U. Flanagan, H.A. Watkins, J.J. Gingell, and D.L. Hay, REVIEW:Structural insights into RAMP modification of secretin family G protein-coupled receptors: implications for drug development. Trends Pharmacol Sci, 2011. 32(10): p. 591-600 Category: Pharmacology & Pharmacy Impact Factor: 11.050 Ranking: 6/249 [BCH]
11. Astle, M.V., L.M. Ooms, A.R. Cole, L.C. Binge, J.M. Dyson, M.J. Layton, S. Petratos, C. Sutherland, and C.A. Mitchell, Identification of a proline-rich inositol polyphosphate 5-phosphatase (PIPP): collapsin response mediator protein 2 (CRMP2) complex that regulates neurite elongation. J Biol Chem, 2011. 286(26): p. 23407-23418 Category: Biochemistry & Molecular Biology Impact Factor: 5.328 Ranking: 50/286 [BCH]
12. Aydin, I., A. Dimitropoulos, S.H. Chen, C. Thomas, and A. Roujeinikova, Purification, crystallization and preliminary X-ray crystallographic analysis of the putative Vibrio parahaemolyticus resuscitation-promoting factor YeaZ. ACTA Crystall F, 2011. F67(5): p. 604-607 Category: Biochemistry & Molecular Biology Impact Factor: 0.563 Ranking: 272/286 [BCH,MICRO]
13. Aydin, I., Y. Saijo-Hamano, K. Namba, C. Thomas, and A. Roujeinikova, Structural Analysis of the Essential Resuscitation Promoting Factor YeaZ Suggests a Mechanism of Nucleotide Regulation through Dimer Reorganization. PLoS One, 2011. 6(8): p. e23245 Category: Biology Impact Factor: 4.411 Ranking: 12/85 [MICRO,BCH]
14. Bach, M., M. Larance, D.E. James, and G. Ramm, The Serine/Threonine Kinase ULK1 is a target of multiple phosphorylation events. Biochem J, 2011. 440(2): p. 283-291 Category: Biochemistry & Molecular Biology Impact Factor: 5.016 Ranking: 55/286 [BCH,MMI]
15. Bach, M. and G. Ramm, How to control self-eating habits: Metabolic control of autophagy. Australian Biochemist, 2011. 42(2): p. 17-20[BCH,MMI]
16. Balamatsias, D., A.M. Kong, J.E. Waters, A. Sriratana, R. Gurung, C.G. Bailey, J.E. Rasko, T. Tiganis, S.L. Macaulay, and C.A. Mitchell, Identification of P-Rex1 as a novel Rac1-guanine nucleotide exchange factor (GEF) that promotes actin remodelling and GLUT4 trafficking in adipocytes. J Biol Chem, 2011. 286(50): p. 43229-43240 Category; Biochemistry & Molecular Biology Impact Factor: 5.328 Ranking: 50/286 [BCH]
17. Becker, T., L.S. Wenz, V. Kruger, W. Lehmann, J.M. Muller, L. Goroncy, N. Zufall, T. Lithgow, B. Guiard, A. Chacinska, R. Wagner, C. Meisinger, and N. Pfanner, The mitochondrial import protein Mim1 promotes biogenesis of multispanning outer membrane proteins. J Cell Biol, 2011. 194(3): p. 387-395 Category: Cell Biology Impact Factor: 9.921 Ranking: 19/177 [BCH]
18. Beddoe, T., A.G. Brooks, and J. Rossjohn, NEWS & COMMENTARY: How opposites attract. Immunol Cell Biol, 2011. 89(2): p. 1-2 Category: Cell Biology Impact Factor: 3.741 Ranking: 76/177 [BCH]
19. Beilharz, T.H. and T. Preiss, Polyadenylation State Microarray (PASTA) Analysis, in Methods Mol Biol - Yeast Systems Biology, J. Castrillo and S. Oliver, Editors. 2011, Humana Press: USA. p. 133-148 Book Chapter [BCH]
20. Beinrohr, L., T.A. Murray-Rust, L. Dyksterhuis, P. Zavodszky, P. Gal, R.N. Pike, and L.C. Wijeyewickrema, Serpins and the complement system, in Methods Enzymol, P. Bird and J. Whisstock, Editors. 2011, Academic Press Elsevier Inc: UK. p. 55-75 Book Chapter [BCH]
21. Berry, R., Z. Chen, J. McCluskey, and J. Rossjohn, Insight into the basis of autonomous immunoreceptor activation. Trends Immunol, 2011. 32(4): p. 165-170 Category: Immunology Impact Factor: 9.533 Ranking: 8/134 [BCH]
22. Bettaieb, A., S. Liu, Y. Xi, N. Nagata, K. Matsuo, I. Matsuo, S. Chahed, J. Bakke, H. Keilhack, T. Tiganis, and F.G. Haj, Differential regulation of endoplasmic reticulum stress by protein tyrosine phosphatase 1B and T cell protein tyrosine phosphatase. J Biol Chem, 2011. 286(11): p. 9225-9235 Category: Biochemistry & Molecular Biology Impact Factor: 5.328 Ranking: 50/286 [BCH]
23. Bharadwaj, M., P. Illing, A. Theodossis, A.W. Purcell, J. Rossjohn, and J. McCluskey, Drug Hypersensitivity and Human Leukocyte Antigens of the Major Histocompatibility Complex. Annu Rev Pharmacol Toxicol, 2011. E-pub: p. 401-431 Category: Pharmacology & Pharmacy Impact Factor: 19.238 Ranking: 2/252 [BCH]
24. Bird, A.D., S.J. Flecknoe, K.H. Tan, P.F. Olsson, N. Antony, T. Mantamadiotis, S.B. Hooper, and T.J. Cole, cAMP Response Element Binding Protein Is Required for Differentiation of Respiratory Epithelium during Murine Development. PLoS One, 2011. 6(3): p. e17843 Category: Biology Impact Factor: 4.411 Ranking: 12/85 [BCH]
25. Boerboom, D., J.F. Lafond, X. Zheng, E. Lapointe, L. Mittaz, A. Boyer, M.A. Pritchard, F.J. Demayo, J.S. Mort, R. Drolet, and J.S. Richards, Partially redundant functions of Adamts1 and Adamts4 in the perinatal development of the renal medulla. Dev Dyn, 2011. 240(7): p. 1806-1814 Category:Developmental Biology Impact Factor: 2.864 Ranking: 17/38 [BCH]
26. Bosnyak, S., E. Jones, A. Christopoulos, M.I. Aguilar, W. Thomas, and R. Widdop, Relative affinity of angiotensin peptides and novel ligands at AT1 and AT2 receptors. Clin Sci (Lond), 2011. 121(7): p. 297-303 Category: Medicine, Research & Experimental Impact Factor: 4.613 Ranking: 17/106 [PHARM,BCH]
27. Bottomley, S.P., The structural diversity in alpha(1)-antitrypsin misfolding. EMBO Rep, 2011. 12(10): p. 983-984 Category: Biochemistry & Molecular Biology Impact Factor: 7.822 Ranking: 31/286 [BCH]
28. Brennan, A.J., J. Chia, K.A. Browne, A. Ciccone, S. Ellis, J.A. Lopez, O. Susanto, S. Verschoor, H. Yagita, J.C. Whisstock, J.A. Trapani, and I. Voskoboinik, Protection from endogenous perforin: glycans and the C terminus regulate exocytic trafficking in cytotoxic lymphocytes. Immunity, 2011. 34(6): p. 879-892 Category: Immunology Impact Factor: 24.221 Ranking: 4/134 [BCH]
29. Brown, K.A., K.J. McInnes, K. Takagi, K. Ono, N.I. Hunger, L. Wang, H. Sasano, and E.R. Simpson, SHORT COMMUNICATION: LKB1 expression is inhibited by estradiol-17beta in MCF-7 cells. J Steroid Biochem Mol Biol, 2011. 127(3-5): p. 1-5 Category: Biochemistry & Molecular Biology Impact Factor: 2.886 Ranking: 138/286 [PHY,BCH]
30. Buckle, A.M., M.A. Bate, S. Androulakis, M. Cinquanta, J. Basquin, F. Bonneau, D.K. Chatterjee, D. Cittaro, S. Graslund, A. Gruszka, R. Page, S. Suppmann, J.X. Wheeler, D. Agostini, M. Taussig, C.F. Taylor, S.P. Bottomley, A. Villaverde, and A. de Marco, Recombinant protein quality evaluation: proposal for a minimal information standard. Stand Genomic Sci, 2011. 5(2): p. 195-197 [BCH]
31. Campbell, B.E., P.R. Boag, A. Hofmann, C. Cantacessi, C.K. Wang, P. Taylor, M. Hu, Z.U. Sindhu, A. Loukas, P.W. Sternberg, and R.B. Gasser, REVIEW: Atypical (RIO) protein kinases from Haemonchus contortus - Promise as new targets for nematocidal drugs. Biotechnol Adv, 2011. 29(3): p. 338-350 Category: Biotechnology & Applied Microbiology Impact Factor: 7.600 Ranking: 9/160 [BCH]
32. Cashin, K., M. Roche, J. Sterjovski, A. Ellett, L.R. Gray, A.L. Cunningham, P.A. Ramsland, M.J. Churchill, and P.R. Gorry, Alternative coreceptor requirements for efficient CCR5- and CXCR4-mediated HIV-1 entry into macrophages. J Virol, 2011. 85(20): p. 10699-10709 Category: Virology Impact Factor: 5.189 Ranking: 5/32 [BCH,MICRO]
33. Chan, J.C., K.M. Hannan, K. Riddell, P.Y. Ng, A. Peck, R.S. Lee, S. Hung, M.V. Astle, M. Bywater, M. Wall, G. Poortinga, K. Jastrzebski, K.E. Sheppard, B.A. Hemmings, M.N. Hall, R.W. Johnstone, G.A. McArthur, R.D. Hannan, and R.B. Pearson, AKT promotes rRNA synthesis and cooperates with c-MYC to stimulate ribosome biogenesis in cancer. Sci Signal, 2011. 4(188): p. ra56.1-11 Category: Cell Biology Impact Factor: 6.354 Ranking: 36/178 [BCH]
34. Chen, Y., H. Wu, W.R. Winnall, K.L. Loveland, Y. Makanji, D.J. Phillips, J.A. Smith, and M.P. Hedger, Tumour necrosis factor-alpha stimulates human neutrophils to release preformed activin A. Immunol Cell Biol, 2011. 89(8): p. 889-896 Category: Cell Biology Impact Factor: 3.741 Ranking: 76/177 [BCH,ANT]
35. Cheng, L., D.J. Smith, R.L. Anderson, and P. Nagley, Human neuroblastoma SH-SY5Y cells show increased resistance to hyperthermic stress after differentiation, associated with elevated levels of Hsp72. Int J Hyper, 2011. 27(5): p. 415-426 Category: Oncology Impact Factor: 2.939 Ranking: 72/184 [BCH]
36. Cheng, L., D.J. Smith, R.L. Anderson, and P. Nagley, Modulation of cellular Hsp72 levels in undifferentiated and neuron-like SH-SY5Y cells determines resistance to staurosporine-induced apoptosis 2. PLoS One, 2011. 6(9): p. e24473 Category: Biology Impact Factor: 4.411 Ranking: 12/85 [BCH]
37. Chow, J.D., M.E. Jones, K. Prelle, E. Simpson, and W.C. Boon, A Selective Estrogen Receptor Alpha Agonist Ameliorates Hepatic Steatosis in the Male Aromatase Knockout Mouse. J Endocrinol, 2011. 210(3): p. 323-334 Category: Endocrinology & Metabolism Impact Factor: 3.099 Ranking: 50/116 [ANT,BCH]
38. Chow, J.D., J.T. Price, M.M. Bills, E.R. Simpson, and W.C. Boon, TECHNICAL REPORT: A doxycycline-inducible, tissue-specific aromatase-expressing transgenic mouse. Transgenic Res, 2011. E-pub: p. 1-14 Category: Biochemistry & Molecular Biology Impact Factor: 2.569 Ranking: 158/286 [BCH,ANT]
39. Clancy, J.L., G.H. Wei, N. Echner, D.T. Humphreys, T.H. Beilharz, and T. Preiss, mRNA isoform diversity can obscure detection of miRNA-mediated control of translation. RNA, 2011. 17(6): p. 1025-1031 Category: Biochemistry & Molecular Biology Impact Factor: 6.051 Ranking: 43/286 [BCH]
40. Colwill, K., H. Persson, N.E. Jarvik, A. Wyrzucki, J. Wojcik, A. Koide, A.A. Kossiakoff, S. Koide, S. Sidhu, M.R. Dyson, K. Pershad, J.D. Pavlovic, A. Karatt-Vellatt, D.J. Schofield, B.K. Kay, J. McCafferty, M. Mersmann, D. Meier, J. Mersmann, S. Helmsing, M. Hust, S. Dubel, S. Berkowicz, A. Freemantle, M. Spiegel, A. Sawyer, D. Layton, E. Nice, A. Dai, O. Rocks, K. Williton, F.A. Fellouse, K. Hersi, T. Pawson, P. Nilsson, M. Sundberg, R. Sjoberg, A. Sivertsson, J.M. Schwenk, J.O. Takanen, S. Hober, M. Uhlen, L.G. Dahlgren, A. Flores, I. Johansson, J. Weigelt, L. Crombet, P. Loppnau, I. Kozieradzki, D. Cossar, C.H. Arrowsmith, A.M. Edwards, and S. Graslund, A roadmap to generate renewable protein binders to the human proteome. Nat Methods, 2011. 8(7): p. 551-561 Category: Biochemical Research Methods Impact Factors: 20.717 Ranking: 1/71 [BCH]
41. Cowling, B.S., D.L. Cottle, B.R. Wilding, C.E. D'Arcy, C.A. Mitchell, and M.J. McGrath, Four and a half LIM protein 1 gene mutations cause four distinct human myopathies: A comprehensive review of the clinical, histological and pathological features. Neuromuscul Disord, 2011. 21(4): p. 237-251 Category: Clinical Neurology Impact Factor: 2.764 Ranking: 66/185 [BCH]
42. Croxford, A.M., K.S. Nandakumar, R. Holmdahl, M.J. Tobin, D. McNaughton, and M.J. Rowley, Chemical changes demonstrated in cartilage by synchrotron infrared microspectroscopy in an antibody-induced murine model of rheumatoid arthritis. J Biomed Op, 2011. 16(6): p. 066004.1-9 Category: Biochemical Research Methods Impact Factor: 3.188 Ranking: 24/71 [BCH]
43. Dagley, M.J., I.E. Gentle, T.H. Beilharz, F.A. Pettolino, J.T. Djordjevic, T.L. Lo, N. Uwamahoro, T. Rupasinghe, D.L. Tull, M. McConville, C. Beaurepaire, A. Nantel, T. Lithgow, A.P. Mitchell, and A. Traven, Cell wall integrity is linked to mitochondria and phospholipid homeostasis in Candida albicans through the activity of the post-transcriptional regulator Ccr4-Pop2. Mol Microbiol, 2011. 79(4): p. 968-989 Category: Biochemistry & Molecular Biology Impact Factor: 4.819 Ranking: 60/286 [BCH]
44. Darido, C., S.R. Georgy, T. Wilanowski, S. Dworkin, A. Auden, Q. Zhao, G. Rank, S. Srivastava, M.J. Finlay, A.T. Papenfuss, P.P. Pandolfi, R.B. Pearson, and S.M. Jane, Targeting of the Tumor Suppressor GRHL3 by a miR-21-Dependent Proto-Oncogenic Network Results in PTEN Loss and Tumorigenesis. Cancer Cell, 2011. 20(5): p. 635-648 Category: Oncology Impact Factor: 26.925 Ranking: 3/185 [BCH]
45. Day, E.B., C. Guillonneau, S. Gras, N.L. La Gruta, D.A. Vignali, P.C. Doherty, A.W. Purcell, J. Rossjohn, and S.J. Turner, Structural basis for enabling T-cell receptor diversity within biased virus-specific CD8+ T-cell responses. Proc Natl Acad Sci U S A, 2011. 108(23): p. 9536-41 Category: Multidisciplinary Sciences Impact Factor: 9.771 Ranking: 3/57 [BCH]
46. D'Cruze, T. and R.J. Devenish, Autophagy as a defence mechanism against bacterial pathogens. Australian Biochemist, 2011. 42(2): p. 11-13 [BCH]
47. D'Cruze, T., L. Gong, P. Treerat, G. Ramm, J. Boyce, M. Prescott, B. Adler, and R.J. Devenish, Role for the Burkholderia pseudomallei Type Three Secretion System cluster 1 bpscN gene in virulence. Infect Immun, 2011. 79(9): p. 3659-3664 Category: Infectious Diseases Impact Factor: 4.098 Ranking: 11/58 [BCH,MICRO]
48. Devenish, R.J., EDITORIAL: Autophagy and the evasion of host defense: A new variation on the theme for Burkholderia cepacia? Autophagy, 2011. 7(11): p. 1269-1270 Category: Cell Biology Impact Factor: 6.643 Ranking: 34/177 [BCH]