Unit 2: Basic Chemistry Review

Concepts of matter and energy

  • Matter: Anything that has mass and occupies space; made of atoms and molecules
  • States: solid, liquid and gas
  • Energy: Ability to do work or put matter into motion
  • Kinetic: energy is actually doing work (moving matter using muscles to lift)
  • Potential: Stored or inactive energy (like in an ATP bond)
  • Types of energy:
  • Chemical energy: Stored in bonds, such as in high energy foods (complex carbohydrates); energy is released when bond is broken.
  • Electrical energy: Movement of charged particles, such as the sodium/potassium pump used for nerve impulses.
  • Mechanical energy: Directly moves matter, such as muscles moving a load.
  • Radiant energy: Traveling in waves, such as the light energy that stimulates the retina in the back of your eye.
  • First law of thermodynamics: Energy can be neither created nor destroyed, it only changes form.
  • Example from your body: ATP bond is broken to release energy → which powers the muscle to contract→ some of the energy is lost has heat (unusable) →you sweat (giving off excess heat) as you exercise.

Composition of Matter

  • Elements: substances that cannot be broken down into simpler substances by ordinary chemical methods, contain only one kind of atom, represented by a symbol
  • Most common elements in human body are respectively: oxygen, carbon, hydrogen, and nitrogen
  • Atoms: building block of elements
  • Nucleus containing protons (positively charged) and neutrons (neutral)
  • Electrons are negatively charged and found oribiting the nucleus in an electron cloud
  • Electrons on the outermost shell are called valence electrons and determines an atom’s chemical behavior

Compounds vs. Mixtures

  • Mixtures can be separated by physical means
  • Salt water, concrete
  • Compounds groups of two or more elements bonded together, like water
  • Covalentcompounds happen when the atoms share the electrons

NonPolar (equally shared electrons) Polar (unequal sharing)

  • Ioniccompounds happen when electrons are transferred from one atom to another atom; this creates ions (charged atom) which are then attracted to each other, usually form salts.

Inorganic Compounds

  • Compounds that do not contain carbon
  • Water, salts, acids and bases
  • Water is the most abundant inorganic compound in your body (60-80% of your body weight)
  • High heat capacity- prevents sudden changes in body temperature
  • Polar- makes water an excellent solvent allowing it to transport nutrients, gases and wastes
  • Chemical reactions- water is an important reactant in hydrolysis reactions (breaking down large molecules in our food)
  • Cushioning- water is protective; cerebrospinal fluid, amniotic fluid
  • Salts, acids and bases are all called ELECTROLYTES (they ionize and then dissociate in water to conduct an electrical current
  • Salts are compounds formed from ionic bonding.
  • When dissolved in body fluids easily separate into ions (charged particles), and are called electrolytes
  • Important for metabolic processes such as sodium/potassium pump for conducting nerve impulses; Iron found on hemoglobin in red blood cells to transport oxygen.
  • Acids (proton donor) and Bases (proton acceptor)
  • acids are substances that release hydrogen ions (H+)
  • 1-6.9 on pH scale
  • Bases are substances that release hydroxide ions (OH-)
  • 7.1-14 on pH scale
  • Living cells are sensitive to slight pH changes and balance in the body is important for proper functioning.
  • pH differs in different places in the body. Ex. blood 7.4 (neutral) to pH 2 (gastric juices)
  • Buffers are present in the body to help maintain the proper pH level.
  • Buffers are weak acids and bases that regulate pH levels by adding or accepting hydrogen ions

Organic Compounds

  • Carbon containing compounds
  • Organic compounds such as carbohydrates, lipids, nucleic acids and proteins are important to our body
  • Carbohydrates: contain carbon, hydrogen and oxygen in a 1:2:1 ratio
  • Building blocks (subunit): monosaccharides (glucose)
  • Main function: major energy source for formation of ATP (cell energy)
  • Secondary function: Structural components of cells (1% to 2% of cells), surface proteins on membrane, component of DNA and RNA.
  • Lipids: contain: carbon, hydrogen, and oxygen (no set ratio)
  • Are non-polar compounds so they do not dissolve in water
  • 3 categories of lipids and their functions:
  • Neutral Fats: triglycerides (glycerol and fatty acids)
  • found in adipose (fat) tissue, provide insulation, protection and long-term energy
  • Phospholipid: Similar to triglycerides with a phosphorous containing group. Very important for selective permeability of plasma membrane.
  • Steroids: Have a ring structure and are fat soluble. Ex. cholesterol found in cell membranes, used to form vitamin D and some hormones (testosterone)
  • Nucleic Acids: contain carbon, oxygen, nitrogen and phosphorous
  • Building block: nucleotides (phosphate group, sugar and nitrogen base).
  • Two types and their functions:
  • DNA (deoxyribonucleic acid)-compose your genes which are responsible for the basic organism blueprint as well as growth and development. All done by dictating protein structure!!
  • RNA (ribonucleic acid)-carries out the orders of DNA genes helping with transcription and translation of gene information into proteins.
  • Proteins: carbon, hydrogen, oxygen and nitrogen--- 50% of your organic matter!
  • Building block: amino acids (20 common types found in body)
  • Amino acid sequence determines the protein structure
  • Two structural types and their functions:
  • Fibrous (structural) proteins. Important for binding structures and providing strength in body tissues.
  • Ex. collagen (tendons, cartilage and skin) and actin and myosin (make up muscles)
  • Globular (mobile/functional) proteins. Involved in most body processes.
  • Ex. antibodies (fight disease), hormones (long term regulation), transport proteins (hemoglobin) and enzymes (catalyze chemical reactions).
  • Destruction of proteins/Denaturing Proteins
  • Fibrous proteins are very stable , globular proteins have many hydrogen bonds and are very fragile
  • Factors that denature (break hydrogen bonds) proteins alter the active site that reacts with the substrate. Factors include increased temperature, pH and/or salinity. Ex. why a high fever is not healthy.

ATP- Adenosine Triphosphate

  • Universal energy molecule used by all cells in your body
  • Energy is stored in the high energy third phosphate bond.