Table S2. The 192 predicted missing genes in E. coli str. K-12 substr. MG1655 genome

NO. / TSS / TES / Chain / Function
1 / 58474 / 59124 / +
2 / 59121 / 59279 / +
3 / 250067 / 248358 / - / MULTISPECIES: flagellar biosynthesis protein FlhA
4 / 253645 / 254202 / + / RF-1 domain-containing protein
5 / 258426 / 257923 / - / MULTISPECIES: IS1 transposase
6 / 258734 / 259006 / + / transcriptional regulator
7 / 266729 / 266553 / - / transcriptional regulator
8 / 270278 / 270646 / + / MULTISPECIES: transposase
9 / 271830 / 272255 / + / transposase of insertion element
10 / 272847 / 273992 / +
11 / 279176 / 278814 / -
12 / 280362 / 280024 / - / transposase
13 / 280735 / 280385 / -
14 / 291500 / 292231 / +
15 / 314357 / 315244 / + / attachment protein
16 / 315587 / 316450 / + / transposase
17 / 381287 / 380844 / - / transferase
18 / 390251 / 391711 / + / outer membrane autotransporter barrel domain-containing protein
19 / 393015 / 394418 / + / pertactin, partial
20 / 408735 / 408950 / +
21 / 454798 / 454986 / +
22 / 527949 / 528659 / +
23 / 530016 / 529645 / -
24 / 566361 / 566098 / - / exonuclease, partial
25 / 576885 / 575758 / - / outer membrane porin protein
26 / 581354 / 582097 / + / tail assembly protein
27 / 582875 / 583060 / + / tail fiber assembly protein
28 / 658031 / 658258 / +
29 / 658255 / 658818 / + / hydrolase
30 / 716309 / 715947 / -
31 / 716597 / 716388 / -
32 / 734220 / 735653 / + / rhsA
33 / 736445 / 736699 / + / MULTISPECIES: transposase
34 / 736918 / 737961 / +
35 / 770636 / 770863 / +
36 / 1081347 / 1081466 / +
37 / 1081466 / 1082185 / + / iron permease
38 / 1095523 / 1095846 / +
39 / 1204170 / 1205537 / +
40 / 1205731 / 1206204 / +
41 / 1206173 / 1206922 / +
42 / 1209658 / 1209119 / - / tail fiber protein
43 / 1211413 / 1211577 / + / isocitrate dehydrogenase
44 / 1219601 / 1221121 / + / AidA-I adhesin-like protein
45 / 1221206 / 1222222 / + / autotransporter
46 / 1223695 / 1223907 / +
47 / 1256297 / 1256476 / +
48 / 1295016 / 1294426 / - / MULTISPECIES: transposase
49 / 1295322 / 1295137 / - / MULTISPECIES: transposase
50 / 1299531 / 1300547 / + / MULTISPECIES: IS5 transposase and trans-activator
51 / 1380821 / 1381789 / + / sugar ABC transporter ATP-binding protein
52 / 1390862 / 1390680 / -
53 / 1422752 / 1423312 / +
54 / 1423339 / 1423644 / + / outer membrane lipoprotein Rz1 lambdoid prophage Rac, partial
55 / 1425621 / 1425980 / +
56 / 1426157 / 1426288 / +
57 / 1426454 / 1427482 / +
58 / 1428726 / 1427746 / - / MULTISPECIES: IS5 transposase and trans-activator
59 / 1428814 / 1428984 / + / enterobacterial Ail/Lom family protein, partial
60 / 1429158 / 1428985 / -
61 / 1430283 / 1429546 / - / prophage tail fiber family protein
62 / 1434746 / 1434919 / +
63 / 1468826 / 1467950 / - / IS2 element transposase InsAB'
64 / 1470690 / 1474013 / +
65 / 1489964 / 1489713 / - / glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain protein
66 / 1490365 / 1489961 / - / glyceraldehyde-3-phosphate dehydrogenase
67 / 1490713 / 1490597 / -
68 / 1527890 / 1529938 / + / protein rhsD, partial
69 / 1530586 / 1531332 / +
70 / 1545714 / 1544758 / -
71 / 1546028 / 1545738 / -
72 / 1590001 / 1588853 / - / fimbrial protein FimD
73 / 1594065 / 1592665 / - / lipoprotein/autotransporter domain-containing protein
74 / 1598086 / 1594109 / -
75 / 1632285 / 1631002 / - / MFS transporter, metabolite:H+ symporter (MHS) family protein
76 / 1636367 / 1635798 / - / protein convertase
77 / 1647636 / 1647346 / -
78 / 1650078 / 1650998 / + / exonuclease
79 / 1650995 / 1651537 / + / transposase insd for insertion element is2a/d/f/h/i/k
80 / 1651512 / 1652708 / +
81 / 1803094 / 1803567 / +
82 / 1803578 / 1804993 / + / RecName: Full=Putative ankyrin repeat protein B
83 / 1936629 / 1936480 / -
84 / 2034051 / 2034536 / + / outer membrane porin truncated homolog b1964 precursor
85 / 2034558 / 2034755 / + / membrane protein
86 / 2034854 / 2035243 / + / membrane protein
87 / 2053328 / 2052624 / -
88 / 2067592 / 2067428 / -
89 / 2070501 / 2071211 / +
90 / 2077940 / 2078134 / +
91 / 2103389 / 2102916 / -
92 / 2170139 / 2169693 / - / galactitol utilization operon repressor, partial
93 / 2170532 / 2171395 / + / transposase
94 / 2173361 / 2172921 / - / PTS system, galactitol-specific IIC component, partial
95 / 2174278 / 2173343 / - / galactitol permease IIC component
96 / 2196474 / 2197298 / + / MULTISPECIES: molybdenum metabolism regulator
97 / 2197410 / 2199347 / + / WGR domain-containing protein
98 / 2199310 / 2200269 / + / MolR family transcriptional regulator
99 / 2209100 / 2210944 / +
100 / 2228519 / 2227323 / - / transporter
101 / 2228758 / 2228549 / - / multidrug transporter
102 / 2288900 / 2286390 / - / membrane protein
103 / 2330283 / 2329798 / - / alpha-2-macroglobulin
104 / 2334312 / 2330299 / - / protein, N-ter fragment, truncated protein
105 / 2349687 / 2349893 / +
106 / 2453252 / 2452356 / - / fimbrial usher protein
107 / 2455001 / 2453265 / - / fimbrial assembly protein
108 / 2471517 / 2471105 / - / CPS-53 (KpLE1) prophage; conserved protein
109 / 2472146 / 2471544 / -
110 / 2472387 / 2472112 / -
111 / 2473246 / 2472878 / - / phage replication protein O, partial
112 / 2522676 / 2522518 / -
113 / 2565480 / 2565355 / -
114 / 2629272 / 2629120 / -
115 / 2772154 / 2771840 / - / arsenate reductase
116 / 2772760 / 2772167 / -
117 / 2773036 / 2772836 / -
118 / 2775906 / 2775784 / -
119 / 2784429 / 2783638 / -
120 / 2785011 / 2784529 / - / MULTISPECIES: hypothetical protein
121 / 2786748 / 2787434 / + / MULTISPECIES: alpha-1,2-mannosidase
122 / 2787447 / 2788238 / + / MULTISPECIES: alpha-amylase
123 / 2808316 / 2808582 / +
124 / 2808576 / 2809493 / + / major Facilitator Superfamily protein
125 / 2857017 / 2856883 / -
126 / 2994041 / 2994415 / + / lytic transglycosylase
127 / 2995092 / 2994937 / - / MULTISPECIES: transcriptional regulator
128 / 2995745 / 2995314 / -
129 / 2996020 / 2995748 / -
130 / 2998828 / 2998034 / -
131 / 3041114 / 3041236 / +
132 / 3059611 / 3059381 / - / LysR family transcriptional regulator
133 / 3112021 / 3111128 / - / GspL
134 / 3113049 / 3112054 / - / DNA-binding protein
135 / 3147266 / 3146856 / - / MULTISPECIES: dienelactone hydrolase, partial
136 / 3147619 / 3147266 / -
137 / 3147740 / 3147597 / -
138 / 3183551 / 3183381 / -
139 / 3187400 / 3189865 / + / putative outer membrane usher protein
140 / 3280701 / 3281102 / + / N-acetylgalactosamine permease IIC protein 2
141 / 3281122 / 3281625 / + / N-acetylglucosamine-6-phosphate deacetylase, partial
142 / 3365185 / 3365664 / +
143 / 3419042 / 3419278 / +
144 / 3419275 / 3420066 / + / amino acid ABC transporter substrate-binding protein
145 / 3532573 / 3532445 / -
146 / 3558268 / 3559848 / + / sigma 54-dependent transcriptional regulator of rtcBA expression
147 / 3560468 / 3560611 / +
148 / 3564005 / 3563724 / - / ORF_f97
149 / 3583038 / 3583454 / +
150 / 3634458 / 3633220 / - / phosphohydrolase
151 / 3651291 / 3652073 / +
152 / 3695961 / 3695233 / - / cell division protein
153 / 3754542 / 3754754 / + / MULTISPECIES: membrane protein
154 / 3767221 / 3767922 / +
155 / 3816549 / 3815863 / - / ribonuclease PH
156 / 3860283 / 3861173 / + / AraC family transcriptional regulator
157 / 3861987 / 3861349 / - / MULTISPECIES:inactive6-phospho-alpha-glucosidase
158 / 3862472 / 3861987 / - / PTS system, maltose and glucose-specific IIC component / PTS system, maltose and glucose-specific IIB component
159 / 3863603 / 3862497 / - / PTSsystem,glucose-likeIIBcomponent
160 / 3950560 / 3951543 / + / thiamine pyrophosphate enzyme, central domain protein
161 / 3951668 / 3952204 / + / acetolactate synthase II, large subunit, C-ter fragment, truncated protein
162 / 3967686 / 3967904 / +
163 / 4049766 / 4049888 / +
164 / 4097527 / 4097676 / +
165 / 4101587 / 4101471 / -
166 / 4132540 / 4132406 / -
167 / 4240056 / 4240199 / +
168 / 4250955 / 4252283 / +
169 / 4322811 / 4322443 / - / phosphonate ABC transporter permease, partial
170 / 4323281 / 4322661 / - / phosphonate ABC transporter permease
171 / 4428717 / 4428095 / - / opacity-associated protein A family protein
172 / 4459508 / 4459855 / + / cytochrome B562
173 / 4496750 / 4497940 / + / MULTISPECIES: integrase
174 / 4499919 / 4499677 / -
175 / 4500474 / 4500043 / - / phosphoethanolamine transferase
176 / 4501932 / 4502075 / + / Permeases of the major facilitator superfamily
177 / 4507197 / 4507463 / + / transposase, partial
178 / 4508942 / 4508574 / - / transposase
179 / 4509117 / 4509554 / + / transposase InsO for insertion sequence element IS911B, partial
180 / 4509876 / 4510133 / +
181 / 4518721 / 4519014 / +
182 / 4519015 / 4519224 / + / putative transposase
183 / 4534675 / 4534544 / -
184 / 4534839 / 4535048 / + / MULTISPECIES: putative DNA helicase, superfamily I
185 / 4535015 / 4536031 / +
186 / 4563925 / 4563668 / -
187 / 4568998 / 4569309 / + / transposase
188 / 4569358 / 4569918 / + / transposase
189 / 4572366 / 4573931 / + / RecName: Full=Putative uncharacterized protein YjiT
190 / 4574135 / 4576855 / +
191 / 4617065 / 4615525 / - / MULTISPECIES: DUF3029 family protein, putative glycine radical enzyme
192 / 4628581 / 4628748 / + / MULTISPECIES: transcriptional regulator