Table S2: Data Used to Generate the Clustergram in Figure 2C

Table S2: Data used to generate the clustergram in Figure 2C

Blattner number / gene syn. / cluster / del27 vs MG1655 l2r / eBOP43 vs MG1655 l2r / eBOP42 vs MG1655 l2r
b0268 / yagE / 1 / 0.2818 / 4.9913 / 0.7993
b0498 / ybbC / 1 / 1.2012 / 2.5567 / 0.5093
b0821 / ybiU / 1 / 1.3900 / 5.0758 / 0.6056
b1340 / ydaL / 1 / 0.3486 / 2.7220 / 1.1172
b1855 / lpxM / 1 / 0.0827 / 1.9991 / 1.4230
b2843 / kduI / 1 / 0.8987 / 2.5598 / 0.9094
b4090 / rpiB / 1 / 0.8407 / 2.7842 / 0.4991
b4242 / mgtA / 1 / 0.1364 / 3.4184 / 0.7146
b0055 / djlA / 1 / -0.1341 / 1.2418 / 0.1336
b0065 / yabI / 1 / 0.6152 / 2.6281 / 0.1828
b0100 / 1 / 0.1509 / 2.3546 / -0.1893
b0101 / yacG / 1 / 0.0334 / 1.2437 / -0.4515
b0123 / cueO / 1 / -1.3099 / 6.0596 / -1.0633
b0154 / hemL / 1 / 0.7621 / 1.1007 / 0.5088
b0161 / degP / 1 / -0.1586 / 1.7152 / 0.1683
b0168 / map / 1 / 0.5990 / 1.2144 / 0.5388
b0200 / gmhB / 1 / 0.7510 / 1.2142 / 0.3413
b0208 / yafC / 1 / 0.0816 / 1.7731 / -0.6289
b0220 / ivy / 1 / -0.0131 / 1.2281 / 0.1959
b0221 / fadE / 1 / -0.3554 / 3.6262 / -0.0212
b0232 / yafN / 1 / 0.0233 / 1.8214 / -0.0433
b0269 / yagF / 1 / 0.2136 / 3.3545 / 0.3682
b0312 / betB / 1 / 0.1897 / 2.5467 / 0.6821
b0360 / insC-1 / 1 / 0.4150 / 1.3691 / 0.4188
b0369 / hemB / 1 / 0.5400 / 2.0850 / -0.1164
b0380 / yaiZ / 1 / 0.6693 / 1.5486 / 0.6932
b0413 / nrdR / 1 / 0.1751 / 1.1694 / 0.4544
b0414 / ribD / 1 / 0.1070 / 1.4618 / 0.7654
b0425 / panE / 1 / -0.4583 / 1.0814 / -0.1499
b0452 / tesB / 1 / -0.1727 / 1.6515 / -0.1740
b0456 / ybaA / 1 / 0.0011 / 1.6996 / 0.0126
b0466 / ybaM / 1 / 0.6391 / 1.5843 / 0.3046
b0467 / priC / 1 / 0.0203 / 2.7448 / 0.0649
b0475 / hemH / 1 / -0.0874 / 1.3476 / -0.6033
b0480 / ushA / 1 / -0.0486 / 1.8656 / -0.1808
b0482 / ybaP / 1 / 0.3017 / 1.7823 / 0.8093
b0484 / copA / 1 / -1.5059 / 6.2198 / -1.5036
b0488 / ybbJ / 1 / -0.3073 / 1.8448 / -0.4644
b0490 / ybbL / 1 / -0.8919 / 1.7801 / -0.8427
b0492 / ybbN / 1 / 0.5320 / 1.0193 / 0.1267
b0506 / allR / 1 / 0.8285 / 1.1122 / 0.0178
b0515 / ylbA / 1 / 1.1158 / 1.3563 / -0.5028
b0528 / ybcJ / 1 / 0.6514 / 1.6174 / 0.2466
b0554 / essD / 1 / 0.4624 / 1.6902 / 0.1628
b0579 / ybdF / 1 / 0.5989 / 1.6982 / 0.2921
b0580 / ybdJ / 1 / 0.0579 / 2.4432 / -0.1607
b0590 / fepD / 1 / -0.2825 / 1.1069 / -0.3316
b0619 / dpiB / 1 / 0.0816 / 1.6284 / 0.1787
b0624 / crcB / 1 / 0.8079 / 1.1697 / 0.2697
b0630 / lipB / 1 / 0.6394 / 1.3526 / 0.1451
b0686 / ybfF / 1 / 0.4719 / 1.3017 / 0.1101
b0699 / ybfA / 1 / -0.0593 / 1.2720 / -0.1412
b0758 / galT / 1 / 0.4404 / 1.0387 / 0.2320
b0759 / galE / 1 / 0.5088 / 1.3484 / 0.6469
b0773 / ybhB / 1 / 0.8733 / 1.3086 / -0.1221
b0782 / moaB / 1 / 0.5150 / 1.0714 / 0.4563
b0784 / moaD / 1 / 0.5275 / 1.5425 / 0.9621
b0791 / ybhQ / 1 / 0.5068 / 1.7551 / -0.2278
b0796 / ybiH / 1 / 0.0238 / 1.0667 / 0.1039
b0801 / ybiC / 1 / 0.7360 / 1.7668 / 0.0553
b0822 / ybiV / 1 / 0.6900 / 1.9455 / 0.1877
b0844 / ybjI / 1 / 0.3674 / 2.0372 / 0.2210
b0878 / macA / 1 / 0.5448 / 1.0884 / 0.6788
b0914 / msbA / 1 / 0.5288 / 1.5791 / 0.3922
b0915 / lpxK / 1 / 0.3372 / 1.1297 / 0.0312
b0917 / ycaR / 1 / 0.4096 / 1.0484 / 0.0108
b0946 / ycbW / 1 / 0.4744 / 1.0323 / -0.0465
b0955 / ycbZ / 1 / -0.4424 / 1.4419 / -0.4034
b0967 / yccW / 1 / -1.1284 / 2.0235 / -0.6299
b0968 / yccX / 1 / -0.1407 / 1.3746 / -0.1680
b1013 / rutR / 1 / 0.0370 / 1.4535 / 0.2607
b1054 / lpxL / 1 / 0.1007 / 3.1737 / 0.2120
b1067 / yceH / 1 / 0.3997 / 1.0686 / 0.0985
b1068 / yceM / 1 / 0.0280 / 1.2260 / 0.1681
b1116 / lolC / 1 / -0.3552 / 1.2930 / 0.0753
b1124 / potC / 1 / -1.1921 / 1.1044 / 0.2770
b1143 / ymfI / 1 / 1.1370 / 0.6497 / -0.2465
b1171 / ymgD / 1 / 0.1033 / 1.6263 / 0.2795
b1172 / ymgG / 1 / 0.0553 / 3.2595 / 0.1337
b1181 / ycgN / 1 / 1.1357 / 0.5885 / -0.1828
b1185 / dsbB / 1 / 1.0356 / 0.8454 / -1.5560
b1192 / ldcA / 1 / 0.3496 / 1.5182 / 0.3530
b1214 / ychA / 1 / -0.2665 / 1.6897 / -0.2491
b1215 / kdsA / 1 / 0.5210 / 1.6460 / 0.5987
b1219 / ychN / 1 / 0.7819 / 2.5453 / -0.0347
b1233 / ychJ / 1 / 0.0149 / 1.2671 / -0.7071
b1246 / oppD / 1 / -1.0281 / 1.3027 / -0.3911
b1247 / oppF / 1 / -0.6508 / 1.4021 / -0.2775
b1249 / cls / 1 / -0.1765 / 1.1356 / 0.1297
b1272 / sohB / 1 / 0.6757 / 1.3772 / 0.4440
b1277 / ribA / 1 / 0.6022 / 1.8366 / 0.0652
b1278 / pgpB / 1 / 0.0114 / 1.6016 / -0.0060
b1308 / pspE / 1 / 0.9309 / 1.4396 / -0.7443
b1328 / ycjZ / 1 / 0.1445 / 1.1134 / 0.1116
b1342 / ydaN / 1 / -0.0232 / 1.0096 / -0.1512
b1398 / paaK / 1 / 0.0384 / 1.0076 / 0.8005
b1412 / azoR / 1 / 0.0094 / 1.0350 / 0.0070
b1414 / ydcF / 1 / -0.4062 / 1.3780 / 0.9125
b1429 / tehA / 1 / 0.1180 / 1.3768 / 1.0122
b1460 / ydcC / 1 / 0.8272 / 1.6356 / 0.2198
b1473 / yddG / 1 / 0.0195 / 1.1423 / 0.0234
b1494 / pqqL / 1 / -0.7239 / 2.0697 / 0.0144
b1508 / hipB / 1 / 0.1134 / 1.1939 / -0.1248
b1536 / ydeI / 1 / -0.4320 / 1.0313 / 0.5570
b1610 / tus / 1 / 0.0040 / 2.3728 / -0.1184
b1613 / manA / 1 / 0.3737 / 1.1607 / 0.7395
b1623 / add / 1 / -0.3721 / 2.0991 / -1.1943
b1628 / rsxB / 1 / 0.1816 / 2.2726 / 0.0447
b1632 / rsxE / 1 / -0.3283 / 2.3229 / -0.3325
b1642 / slyA / 1 / 0.4483 / 1.3029 / 0.5561
b1651 / gloA / 1 / 0.9639 / 1.0472 / 0.2753
b1705 / ydiE / 1 / 1.2500 / 0.9319 / -0.2478
b1715 / pheM / 1 / 1.4178 / 1.7437 / -1.0155
b1723 / pfkB / 1 / -0.9229 / 1.2794 / 0.5690
b1766 / sppA / 1 / 0.4122 / 1.5748 / 0.5582
b1768 / pncA / 1 / 0.3428 / 1.4453 / 0.6754
b1770 / ydjF / 1 / 0.1775 / 1.4478 / -0.7759
b1782 / mipA / 1 / 0.3238 / 1.2524 / 0.3699
b1799 / yeaT / 1 / -0.0009 / 1.9483 / 0.0359
b1804 / rnd / 1 / 0.7105 / 1.6296 / 0.6973
b1805 / fadD / 1 / 0.8363 / 1.8325 / 0.3426
b1811 / yoaH / 1 / 0.7007 / 1.3999 / 0.3332
b1834 / yebT / 1 / -0.2475 / 1.7634 / 0.3940
b1848 / yebG / 1 / 1.1743 / 1.5968 / 0.2070
b1860 / ruvB / 1 / 0.5756 / 1.8311 / 0.4065
b1863 / ruvC / 1 / -0.1158 / 1.3358 / 0.3079
b1876 / argS / 1 / -0.0853 / 1.3034 / 0.4769
b1902 / ftnB / 1 / -0.4470 / 2.3353 / -0.8791
b1912 / pgsA / 1 / 0.7556 / 1.4675 / 0.1841
b1915 / yecF / 1 / 0.0097 / 1.3850 / -0.1268
b1928 / yedD / 1 / 0.5352 / 1.8642 / 0.8122
b1952 / dsrB / 1 / 0.2507 / 1.3084 / -0.0376
b1957 / yodC / 1 / -0.3572 / 1.5654 / -0.1637
b1969 / yedW / 1 / -0.3243 / 1.6032 / -0.0372
b1983 / yeeN / 1 / -0.0334 / 1.2587 / -0.2459
b1992 / cobS / 1 / 0.3158 / 1.5529 / 0.8742
b2011 / sbcB / 1 / 0.0552 / 1.3505 / -0.1282
b2028 / ugd / 1 / -0.4941 / 1.3868 / 0.0581
b2124 / yehS / 1 / 0.2747 / 1.1181 / 0.3016
b2132 / bglX / 1 / 0.1685 / 2.3641 / 0.2512
b2159 / nfo / 1 / 0.5043 / 1.1666 / 0.7363
b2167 / fruA / 1 / 0.2214 / 1.1517 / -0.8368
b2168 / fruK / 1 / -0.4799 / 1.2720 / -0.2573
b2181 / yejG / 1 / -0.7567 / 3.0454 / -0.8848
b2231 / gyrA / 1 / 0.3521 / 1.1834 / 0.0359
b2232 / ubiG / 1 / 0.3236 / 1.1122 / 0.4525
b2237 / inaA / 1 / 0.0417 / 1.3982 / -0.1472
b2259 / pmrD / 1 / 0.4788 / 1.7681 / 0.7179
b2306 / hisP / 1 / -0.5408 / 1.9891 / 0.5412
b2324 / mnmC / 1 / 0.0315 / 1.6981 / -0.0770
b2341 / fadJ / 1 / -0.3691 / 1.4162 / -0.2423
b2377 / yfdY / 1 / -0.4799 / 2.6904 / -0.2821
b2400 / gltX / 1 / 0.4241 / 1.0058 / 0.4733
b2410 / yfeH / 1 / 0.1120 / 1.2665 / 0.0627
b2413 / cysZ / 1 / 0.0080 / 1.5630 / 0.0622
b2428 / murQ / 1 / -0.4440 / 2.4263 / 0.1910
b2471 / yffB / 1 / 0.6490 / 1.9095 / 0.4874
b2472 / dapE / 1 / 0.5740 / 1.0311 / 0.4791
b2493 / yfgO / 1 / -0.3345 / 1.8880 / -0.3839
b2520 / yfhM / 1 / -1.1553 / 2.9861 / -0.5972
b2565 / recO / 1 / -0.0588 / 1.0490 / -0.0870
b2582 / trxC / 1 / 0.0938 / 1.3515 / -0.0773
b2611 / ypjD / 1 / -0.0246 / 1.2602 / -0.7171
b2613 / 1 / -0.1847 / 1.2104 / 0.0176
b2618 / yfjF / 1 / 0.6248 / 2.5099 / 0.0572
b2619 / yfjG / 1 / 0.5595 / 1.1389 / -0.0184
b2664 / csiR / 1 / 0.1709 / 1.2230 / -0.0337
b2677 / proV / 1 / -0.1951 / 1.4926 / -0.5575
b2678 / proW / 1 / -0.2527 / 3.4595 / 0.0741
b2679 / proX / 1 / 0.3291 / 1.9786 / 0.4640
b2690 / yqaB / 1 / 0.2053 / 1.1305 / 0.4488
b2700 / ygaD / 1 / 0.3730 / 1.1610 / 0.6854
b2733 / mutS / 1 / 0.5828 / 1.4692 / 0.6407
b2777 / ygcF / 1 / 0.0710 / 2.0288 / -0.0477
b2790 / yqcA / 1 / 0.8359 / 2.0819 / 0.5296
b2794 / queF / 1 / 0.5415 / 1.2252 / 0.4492
b2837 / galR / 1 / 0.5567 / 2.1346 / 0.0566
b2892 / recJ / 1 / 0.1178 / 1.4281 / 0.0861
b2898 / ygfZ / 1 / 0.5800 / 1.4084 / 0.4706
b2901 / bglA / 1 / 0.5979 / 1.2161 / 0.6723
b2923 / argO / 1 / -0.0776 / 1.2819 / 0.1507
b2947 / gshB / 1 / 0.6011 / 1.6450 / 0.7191
b2954 / rdgB / 1 / 0.7366 / 1.4487 / 0.7120
b2955 / yggW / 1 / 0.0313 / 1.6603 / 0.0294
b2964 / nupG / 1 / 0.0352 / 4.5085 / 0.0293
b3002 / yqhA / 1 / 0.0373 / 2.2921 / -0.8871
b3006 / exbB / 1 / 0.2187 / 1.2603 / 0.5414
b3025 / qseB / 1 / 0.0117 / 1.3808 / 0.1625
b3053 / glnE / 1 / -0.3210 / 1.3960 / 0.1086
b3071 / yqjI / 1 / 0.1529 / 1.5115 / 0.2218
b3095 / yqjA / 1 / 0.0762 / 1.0599 / -0.3709
b3096 / yqjB / 1 / -0.0290 / 1.1720 / 0.0499
b3102 / yqjG / 1 / 0.3172 / 1.0817 / -0.0770
b3147 / yraM / 1 / 0.6198 / 1.3619 / 0.5828
b3157 / yhbT / 1 / 0.5011 / 1.3110 / 0.2646
b3166 / truB / 1 / 0.5056 / 1.3489 / 0.4578
b3194 / yrbE / 1 / 0.1101 / 1.6214 / 0.4616
b3225 / nanA / 1 / 0.2897 / 1.1322 / 0.0522
b3232 / yhcM / 1 / 0.0097 / 2.0302 / 0.1410
b3290 / trkA / 1 / -0.1378 / 1.2490 / -0.3211
b3343 / yheL / 1 / 0.6011 / 1.6422 / 0.6480
b3344 / yheM / 1 / 0.1543 / 1.3883 / 0.5989
b3398 / yrfF / 1 / 0.5437 / 2.0582 / 0.6431
b3406 / greB / 1 / 0.0403 / 1.9056 / 0.0588
b3419 / 1 / 0.0135 / 1.0522 / -0.0015
b3434 / yhgN / 1 / 0.0108 / 1.0412 / 0.0031
b3459 / yhhK / 1 / 0.2738 / 1.1455 / -0.9431
b3462 / ftsX / 1 / 0.8948 / 1.1755 / 0.0796
b3464 / ftsY / 1 / 0.8018 / 1.6064 / 0.6759
b3468 / yhhN / 1 / -0.1313 / 1.0697 / -0.5043
b3502 / arsB / 1 / -0.0373 / 2.0962 / 0.3553
b3527 / yhjJ / 1 / 0.5424 / 1.9323 / 0.6679
b3605 / lldD / 1 / -0.5413 / 0.4243 / 1.1188
b3616 / tdh / 1 / 1.2461 / 1.9608 / 0.1360
b3640 / dut / 1 / 0.3733 / 1.0237 / 0.3300
b3641 / slmA / 1 / 0.5438 / 1.4798 / 0.7821
b3643 / rph / 1 / 0.4000 / 2.1689 / 0.2274
b3644 / yicC / 1 / 0.3391 / 2.0226 / 0.0870
b3712 / yieE / 1 / 0.5264 / 1.4388 / 0.2944
b3713 / yieF / 1 / 0.4439 / 1.2983 / 0.0405
b3715 / yieH / 1 / 0.0903 / 1.8883 / -0.5470
b3749 / rbsA / 1 / -0.5654 / 2.1284 / -0.3141
b3755 / yieP / 1 / -0.0116 / 1.3098 / -0.2395
b3772 / ilvA / 1 / 1.1204 / 1.0108 / 0.1007
b3778 / rep / 1 / -0.1526 / 1.5905 / -0.0666
b3785 / wzzE / 1 / 0.1912 / 2.4366 / 0.1488
b3821 / pldA / 1 / 0.8188 / 1.0954 / 0.2934
b3834 / yigP / 1 / 0.5510 / 1.6981 / 0.6969
b3843 / ubiD / 1 / -0.0303 / 1.2776 / 0.1704
b3846 / fadB / 1 / -0.4110 / 1.0203 / 0.3022
b3863 / polA / 1 / 0.3066 / 1.0832 / 0.5989
b3915 / fieF / 1 / 0.3591 / 1.0384 / 0.2228
b3918 / cdh / 1 / 0.8138 / 1.5418 / 0.2267
b3937 / yiiX / 1 / 0.6090 / 1.1304 / 0.4582
b3967 / murI / 1 / -0.1432 / 1.1291 / 0.8988
b3982 / nusG / 1 / 0.4792 / 1.0100 / 0.6050
b3997 / hemE / 1 / 0.0850 / 1.1900 / 0.1179
b3998 / nfi / 1 / -0.0354 / 1.3267 / -0.0555
b4023 / pagB / 1 / 0.4114 / 1.8848 / 0.3993
b4032 / malG / 1 / -0.0640 / 1.2795 / 0.0060
b4055 / aphA / 1 / 0.8088 / 1.2265 / 0.0554
b4129 / lysU / 1 / -0.0887 / 1.6063 / 0.2928
b4148 / sugE / 1 / 1.1675 / 0.6992 / -0.0529
b4160 / psd / 1 / 0.5958 / 1.0300 / 0.6491
b4180 / rlmB / 1 / 0.9282 / 1.1551 / -0.0875
b4191 / ulaR / 1 / 0.2933 / 1.3884 / 0.2968
b4211 / ytfG / 1 / 0.3026 / 1.8096 / 0.4216
b4233 / mpl / 1 / 0.1141 / 1.1332 / 0.0388
b4234 / yjgA / 1 / 0.5387 / 1.0617 / 0.4996
b4262 / lptG / 1 / 0.1274 / 2.0356 / -0.1538
b4292 / fecR / 1 / -0.7719 / 1.8085 / -0.6222
b4313 / fimE / 1 / 0.0724 / 1.1271 / 0.0744
b4323 / uxuB / 1 / 0.8389 / 1.0241 / 0.4355
b4386 / lplA / 1 / 0.0716 / 1.0499 / 0.1548
b4387 / ytjB / 1 / 0.1651 / 1.2403 / 1.0337
b4389 / radA / 1 / -0.4814 / 1.1720 / 0.0302
b4392 / slt / 1 / -0.3592 / 1.1252 / -0.1984
b4403 / yjtD / 1 / 0.0144 / 1.1689 / 0.0809
b4409 / blr / 1 / 1.3479 / 2.7231 / -0.4119
b2576 / srmB / 1 / -0.0454 / 0.8655 / -1.1489
b3620 / rfaF / 1 / -0.5773 / 1.0709 / -0.7885
b1126 / potA / 1 / -1.2978 / 1.6799 / -0.5845
b1631 / rsxG / 1 / -1.1895 / 1.7077 / -1.1865
b0086 / murF / 1 / -1.3331 / 1.0325 / -1.0505
b0089 / ftsW / 1 / -1.1282 / 1.1269 / -0.8242
b1055 / yceA / 1 / -1.1844 / 0.8781 / -0.2325
b1245 / oppC / 1 / -1.4408 / 1.1059 / -0.5412
b1849 / purT / 1 / -1.0929 / 0.6503 / -0.5170
b2666 / yqaE / 1 / 0.2714 / 0.3176 / -1.3988
b2844 / yqeF / 1 / -0.1174 / 0.7027 / -1.0781
b2907 / ubiH / 1 / -1.3100 / 0.4339 / -0.0463
b2961 / mutY / 1 / -1.0464 / 0.7914 / -0.1932
b2979 / glcD / 1 / -0.9721 / 1.0759 / -0.4813
b3153 / yhbO / 1 / -1.0022 / 0.2782 / 0.1878
b3707 / tnaC / 2 / -1.7150 / -6.7883 / -1.7826
b1938 / fliF / 2 / -1.3410 / -4.1015 / -4.0276
b1939 / fliG / 2 / -1.2842 / -4.1636 / -4.1485
b0336 / codB / 2 / -6.0498 / -4.1178 / -5.6479
b0485 / ybaS / 2 / -7.2325 / -2.9628 / -5.6271
b0945 / pyrD / 2 / -4.6688 / -4.6292 / -4.1462
b1037 / csgG / 2 / -7.4565 / -7.3442 / -7.3464
b1038 / csgF / 2 / -9.8207 / -7.0616 / -6.9185
b1039 / csgE / 2 / -8.9821 / -6.2253 / -6.7267
b1040 / csgD / 2 / -6.7388 / -5.3920 / -4.9992
b1041 / csgB / 2 / -10.8751 / -10.9499 / -10.9001
b1042 / csgA / 2 / -10.4311 / -9.4647 / -10.7045
b1043 / csgC / 2 / -4.0513 / -4.0954 / -4.0606
b1341 / ydaM / 2 / -4.1714 / -4.2951 / -4.1237
b1492 / gadC / 2 / -8.5847 / -6.4226 / -8.5858
b1493 / gadB / 2 / -8.5782 / -4.2968 / -8.0532
b1941 / fliI / 2 / -3.4619 / -4.3223 / -4.2958
b1942 / fliJ / 2 / -2.9415 / -4.1202 / -4.0298