EndNote Control of Your Bibliography
The examples below show how EndNote can manage citations in a research article. Scroll down to see the same “single-sentence article” as it would appear in theAmerican Journal of Veterinary Research,theJournal ofVirological Methods, Equine Veterinary Journal, and Veterinary Pathology. Each of these journals handles citations in different ways. Below these four journal examples is a bibliography that includes the abstract of the article – annotated bibliographies can be a convenient way to keep track of your research.
American Journal of Veterinary Researchuses numbers in the article text and numbered bibliography that avoids spaces – there is no space between the semi colon after the year or the colon after the volume. As for most veterinary journals, journal names are abbreviated without periods.
Recent articles written by College of Veterinary Medicine researchers at Auburn have discussed bacteriophages,1 pregnancy-associated glycoproteins,2 transmitochondrial mice,3 equine anaesthesia,4 and Herpes simplex virus.5
1.Samoylova TI, MorrisonNE, Globa LP, et al. Peptide phage display: opportunities for development of personalized anti-cancer strategies. Anticancer Agents Med Chem 2006;6:9-17.
2.Whitlock BK, Maxwell HS. Pregnancy-associated glycoproteins and pregnancy wastage in cattle. Theriogenology 2008;70:550-559.
3.Pinkert CA, Trounce IA. Generation of transmitochondrial mice: development of xenomitochondrial mice to model neurodegenerative diseases. Methods Cell Biol 2007;80:549-569.
4.Schumacher J, Livesey L, DeGraves FJ, et al. Effect of anaesthesia of the palmar digital nerves on proximal interphalangeal joint pain in the horse. Equine Vet J 2004;36:409-414.
5.Sedlackova L, Perkins KD, Lengyel J, et al. Herpes simplex virus type 1 ICP27 regulates expression of a variant, secreted form of glycoprotein C by an intron-retention mechanism. J Virol 2008;82:7443-7455.
Journal of Virological Methodsuses parenthetical author-date citations in the text and an alphabetical bibliography. In the bibliography, author names are all in caps and the full name of the journal is spelled out – in contrast to most veterinary journals which use journal abbreviations.
Recent articles written by College of Veterinary Medicine researchers at Auburn have discussed bacteriophages (Samoylova et al. 2006), pregnancy-associated glycoproteins (Whitlock and Maxwell 2008), transmitochondrial mice (Pinkert and Trounce 2007), equine anaesthesia (Schumacher et al. 2004), and Herpes simplex virus (Sedlackova et al. 2008).
PINKERT, C. A., ANDI. A. TROUNCE. 2007. Generation of transmitochondrial mice: development of xenomitochondrial mice to model neurodegenerative diseases. Methods in Cell Biology 80: 549-569.
SAMOYLOVA, T. I., N. E. MORRISON, L. P. GLOBA, ANDN. R. COX. 2006. Peptide phage display: opportunities for development of personalized anti-cancer strategies. Anti-Cancer Agents in Medicinal Chemistry 6: 9-17.
SCHUMACHER, J., L. LIVESEY, F. J. DEGRAVES, M. C. SCHRAMME, J. HATHCOCK, J. TAINTOR, ANDJ. GOMEZ. 2004. Effect of anaesthesia of the palmar digital nerves on proximal interphalangeal joint pain in the horse. Equine Veterinary Journal 36: 409-414.
SEDLACKOVA, L., K. D. PERKINS, J. LENGYEL, A. K. STRAIN, V. L. VAN SANTEN, ANDS. A. RICE. 2008. Herpes simplex virus type 1 ICP27 regulates expression of a variant, secreted form of glycoprotein C by an intron-retention mechanism. Journal of Virology 82: 7443-7455.
WHITLOCK, B. K., ANDH. S. MAXWELL. 2008. Pregnancy-associated glycoproteins and pregnancy wastage in cattle. Theriogenology 70: 550-559.
Equine Veterinary Journaluses parenthetical author-date format in the text with an alphabetical bibliography. Unlike most bibliography formats, there is a blank line between each reference.
Recent articles written by College of Veterinary Medicine researchers at Auburn have discussed bacteriophages (Samoylova et al. 2006), pregnancy-associated glycoproteins (Whitlock and Maxwell 2008), transmitochondrial mice (Pinkert and Trounce 2007), equine anaesthesia (Schumacher et al. 2004), and Herpes simplex virus (Sedlackova et al. 2008).
Pinkert, C.A. and Trounce, I.A. (2007) Generation of transmitochondrial mice: development of xenomitochondrial mice to model neurodegenerative diseases. Methods Cell Biol. 80, 549-569.
Samoylova, T.I., Morrison, N.E., Globa, L.P. and Cox, N.R. (2006) Peptide phage display: opportunities for development of personalized anti-cancer strategies. Anticancer Agents Med. Chem. 6, 9-17.
Schumacher, J., Livesey, L., DeGraves, F.J., Schramme, M.C., Hathcock, J., Taintor, J. and Gomez, J. (2004) Effect of anaesthesia of the palmar digital nerves on proximal interphalangeal joint pain in the horse. Equine Vet. J. 36, 409-414.
Sedlackova, L., Perkins, K.D., Lengyel, J., Strain, A.K., van Santen, V.L. and Rice, S.A. (2008) Herpes simplex virus type 1 ICP27 regulates expression of a variant, secreted form of glycoprotein C by an intron-retention mechanism. J. Virol.82, 7443-7455.
Whitlock, B.K. and Maxwell, H.S. (2008) Pregnancy-associated glycoproteins and pregnancy wastage in cattle. Theriogenology70, 550-559.
Veterinary Pathologyuses numbers in the text that are arranged according to the numbered alphabetical list in the bibliography. This is achallenging format to use. Note how the numbered reference that appears first in the text (#2) corresponds to the second referencein the bibliography. The lack of a period after the numbers on the left hand is not a mistake – that is the format used by Veterinary Pathology.
Recent articles written by College of Veterinary Medicine researchers at Auburn have discussed bacteriophages,2 pregnancy-associated glycoproteins,5 transmitochondrial mice,1 equine anaesthesia,3 and Herpes simplex virus.4
1Pinkert CA, TrounceIA: Generation of transmitochondrial mice: development of xenomitochondrial mice to model neurodegenerative diseases. Methods Cell Biol 80:549-569, 2007
2Samoylova TI, MorrisonNE, Globa LP, Cox NR: Peptide phage display: opportunities for development of personalized anti-cancer strategies. Anticancer Agents Med Chem 6:9-17, 2006
3Schumacher J, Livesey L, DeGraves FJ, Schramme MC, Hathcock J, Taintor J, Gomez J: Effect of anaesthesia of the palmar digital nerves on proximal interphalangeal joint pain in the horse. Equine Vet J 36:409-414, 2004
4Sedlackova L, Perkins KD, Lengyel J, StrainAK, van Santen VL, Rice SA: Herpes simplex virus type 1 ICP27 regulates expression of a variant, secreted form of glycoprotein C by an intron-retention mechanism. J Virol82:7443-7455, 2008
5Whitlock BK, Maxwell HS: Pregnancy-associated glycoproteins and pregnancy wastage in cattle. Theriogenology70: 550-559, 2008
Bibliography with abstract – This can be a valuable format for your own personal use. An annotated bibliography is a great way to look more closely at what your literature searches have identified as potentially useful articles.
Samoylova, T. I., N. E. Morrison, et al. (2006). "Peptide phage display: opportunities for development of personalized anti-cancer strategies." Anti-Cancer Agents in Medicinal Chemistry6(1): 9-17.
Personalized medicine is critical for cancer patients, because (1) cancer is a highly heterogeneous disease with major molecular differences in the expression and distribution of tumor cell surface markers among patients with the same type and grade of cancer, (2) cellular mutations tend to accumulate as cancer progresses, further increasing tumor heterogeneity, and (3) currently used cancer therapies often are toxic to normal cells, causing severe side effects rarely seen in other diseases. To prevent side effects and to improve effectiveness, cytotoxic therapies should be targeted and each patient should be profiled for the presence of cancer targets before the therapy is administered. Phage display technology utilizes combinatorial libraries of proteins expressed on phage particles that can be selected for specific binding to cancer cells. Such cancer-specific molecules can be used in a variety of applications, including identification of cell-specific targeting molecules; identification of cell surface biomarkers; profiling of specimens obtained from individual cancer patients, and the design of peptide-based anti-cancer therapeutics for personalized treatments. This review is focused on peptide phage display strategies that target cell surfaces because many biomarkers important in cancer are differentially expressed molecules located on the outside of the cell membranes.
Whitlock, B. K. and H. S. Maxwell (2008). "Pregnancy-associated glycoproteins and pregnancy wastage in cattle." Theriogenology70: 550-559.
Accurate diagnosis of non-pregnancy and prompt re-enlistment of "non-pregnant" cattle into an appropriate breeding protocol are essential components of successful reproductive programs. Various methods aimed at improving detection of pregnancy and identification of non-pregnant cows earlier and more accurately are the focus of previous review articles and beyond the scope of this manuscript. Recently, the ability to measure pregnancy-associated glycoproteins (PAGs) in cattle has changed how pregnancy and, more importantly, non-pregnancy are detected. This presentation provides an overview of current research on the pregnancy-associated glycoprotein family, and how these glycoproteins might be utilized as indicators of pregnancy wastage in cattle.
Pinkert, C. A. and I. A. Trounce (2007). "Generation of transmitochondrial mice: development of xenomitochondrial mice to model neurodegenerative diseases." Methods in Cell Biology80: 549-69.
[There is no abstract in PubMed for this article.]
Schumacher, J., L. Livesey, et al. (2004). "Effect of anaesthesia of the palmar digital nerves on proximal interphalangeal joint pain in the horse." Equine Veterinary Journal36(5): 409-14.
REASONS FOR PERFORMING STUDY: Anaesthesia of the palmar digital nerves is claimed to attenuate lameness in some horses that are lame because of pain in the proximal interphalangeal (PIP) joint. OBJECTIVE: To determine the response of horses with pain in the PIP joint to anaesthesia of the palmar digital nerves. METHODS: Horses were video recorded trotting before and after induction of pain in the PIP joint and 10 mins after anaesthesia of the palmar digital nerves. The palmar digital nerves were anaesthetised 3 times at different sites, and the video recorded gaits were scored subjectively. RESULTS: The median lameness score of gaits after administration of 2% mepivacaine 1 cm proximal to the cartilages of the foot was not significantly different from the median lameness score before anaesthesia of the palmar digital nerves (P > or = 0.05), although that of 1 of 6 horses improved markedly. The median lameness score was significantly (P < or = 0.05) improved after mepivacaine was administered 2 and 3 cm proximal to the cartilages of the foot. CONCLUSIONS: The PIP joint is unlikely to be anaesthetised when the palmar digital nerves are anaesthetised at the proximal margin of the cartilages of the foot. POTENTIAL RELEVANCE: Pain within the PIP joint cannot be excluded as a cause of lameness when lameness is attenuated by anaesthesia of the palmar digital nerves at any site proximal to the proximal margin of the cartilages of the foot.
Sedlackova, L., K. D. Perkins, et al. (2008). "Herpes simplex virus type 1 ICP27 regulates expression of a variant, secreted form of glycoprotein C by an intron-retention mechanism." Journal of Virology82: 7443-7455.
We previously showed that herpes simplex virus type 1 (HSV-1) immediate-early (IE) protein ICP27 can post-transcriptionally stimulate mRNA accumulation from a transfected viral late gene encoding glycoprotein C (gC) (Perkins, K.D., J. Gregonis, S. Borge, and S.A. Rice, J. Virol. 77:9872-9884, 2003). We began this study by asking whether ICP27 homologs from other herpesviruses can also mediate this activity. Although the homologs from varicella-zoster virus (VZV) and human cytomegalovirus (HCMV) were inactive, the homolog from bovine herpesvirus 4 (BHV-4), termed HORF1/2, was a very efficient transactivator. Surprisingly, most of the mRNA produced via HORF1/2 transactivation was 225 nucleotides shorter than expected due to the removal of a previously undescribed intron from the gC transcript. We found that the gC mRNA produced in the absence of transactivation was also mostly spliced. In contrast, gC mRNA produced by ICP27 transactivation was predominantly unspliced. Based on these results, we conclude that ICP27 has two distinct effects on the transfected gC gene: it i) stimulates mRNA accumulation, and ii) promotes the retention of an intron. Interestingly, the spliced transcript encodes a variant of gC that lacks its transmembrane domain and is secreted from transfected cells. As the gC splicing signals are conserved amongst several HSV-1 strains, we investigated whether the variant gC is expressed during viral infection. We report here that both the spliced transcript and its encoded protein are readily detected in Vero cells infected with three different laboratory strains of wild-type HSV-1. Moreover, the variant gC is efficiently secreted from infected cells. We have designated this alternate form of the protein as gCsec. As the extracellular domain of gC is known to bind heparan sulphate (HS)-containing proteoglycans and to inhibit the complement cascade via an interaction with complement component C3b, we speculate that gCsec could function as a secreted virulence factor.