Supplementary Table 3

Overview of nonsynonymous substitutions

Locus / Haplo / Ecto / Peri / Cypri / Cyph / Limn / Lamp / Eret / Bathy / Boule / Trem / Tylo / Tilap / Total charge / Total polarity
EdnrAa / - / - / - / 1 / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / 4 / - / 1 / 2 / 1
EdnrB1a / - / 1 / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / - / 1 / - / - / 1 / -
Edn1 / - / 5 / - / 1 / 1a / 1 / 1a / - / - / - / 1 / 1 / 1 / 4 / - / 2 / - / 1 / - / 1 / - / 5 / 3b / 4 / 3b / 1 / 14 / 7
Edn3b / 1 / 2 / - / - / 2 / - / - / - / - / - / - / 1 / - / 1 / - / 1 / - / 1 / - / 1 / - / 2 / 1b / 3 / 1b / 2 / 4 / 8

Lineage specific (left column) and species-specific (right column) nonsynonymous substitutions per locus for the Haplochromines, Ectodines, Perissodines, Cyprichromines, Limnochromines, Lamprologines, Eretmodines, Bathybatines, Boulengerochromines, Trematocarines, Tylochromines and Tilapiini’s. The number of nonsynonymous substitutions causing a change in charge and polarity are shown in the last two columns

a One nonsynonymous substitution is shared by the Cyprichromini and one of the Perissodini

b Nonsynonymous substitutions are shared by the two outgroup clades Tylochromini and Tilapiini