Supplementary Table 2: List of hypermethylated promoter sequences identified by DMH

Gene name / Chr location / Repeats / Upstream gene / Distance / Downstream gene / Distance / Overlapping gene / CpG Island Prediction / Cytoband
SFRS12 / chr5:65475470-65476314 / 0 / ERBB2IP / 62864 / SFRS12 / 13396 / No / yes / 5q12.3
PPIL3 / chr2:201461963-201462216 / 0 / CLK1 / 24296 / NIF3L1 / 174 / yes / no / 2q33.1
BTG2 / chr1:201540912-201541461 / 9.43739 / CHIT1 / 75513 / FMOD / 34914 / Yes / yes / 1q32.1
TAF7 / chr5:140680057-140680374 / 0 / SLC25A2 / 16261 / PCDHGA1 / 10061 / No / yes / 5q31.3
SMCR8 / chr17:18159270-18159467 / 0 / TOP3A / 224 / SHMT1 / 12452 / No / No / 17p11.2
DTNA / chr18:30426849-30427289 / 0 / NOL4 / 369336 / DTNA / 30 / No / No / 18q12.1
FLJ90834 / chr11:67130240-67131511 / 0 / GSTP1 / 19541 / AK124982 / 5186 / yes / yes / 11q13.2
KNTC2 / chr18:2561858-2562063 / 0 / METTL4 / 388 / SMCHD1 / 128793 / Yes / yes / 18p11.32
SDPR / chr2:192419031-192420084 / 0 / OBFC2A / 158500 / TMEFF2 / 101933 / No / yes / 2q32.3
ANKMY2 / chr7:16651378-16651766 / 12.8866 / SOSTDC1 / 114648 / BZW2 / 517 / No / yes / 7p21.1
RERE / chr1:8799536-8800122 / 11.414 / ERRFI1 / 790593 / ENO1 / 43527 / Yes / yes / 1p36.23
LRPPRC / chr2:44075954-44076265 / 0 / ABCG8 / 116846 / PPM1B / 173238 / No / yes / 2p21
PJA2 / chr5:108772768-108774097 / 4.65815 / FER / 221496 / MAN2A1 / 278957 / No / yes / 5q21.3
ZNF471 / chr19:61710614-61711840 / 2.28199 / ZNF667 / 30059 / ZNF471 / 18659 / No / yes / 19q13.43
ACADL / chr2:210797557-210798629 / 0 / FLJ23861 / 53261 / AF143882 / 7031 / No / yes / 2q34
TBC1D7 / chr6:13436298-13437051 / 9.00783 / AK091836 / 32501 / GFOD1 / 34746 / No / yes / 6p24.1
PCDHA3 / chr5:140326007-140327120 / 9.52381 / PCDHAC1 / 36438 / PCDHB1 / 84042 / No / Yes / 5q31
C1orf103 / chr1:111307964-111308513 / 0 / C1orf103 / 11538 / TMEM77 / 152967 / No / yes / 1p13.3
FAM46B / chr1:27211801-27212146 / 0 / LOC388610 / 12070 / SLC9A1 / 85747 / No / yes / 1p36.11
ABHD10 / chr3:113180383-113180979 / 0 / PHLDB2 / 2574 / TAGLN3 / 19296 / No / yes / 3q13.2
BC047782 / chr17:71487150-71487470 / 0 / ACOX1 / 111 / CDK3 / 21543 / No / yes / 17q25.1
HIGD2BP / chr15:70765265-70765991 / 0 / ARIH1 / 102388 / ADPGK / 64769 / yes / yes / 15q24.1
DAPK1 / chr9:89302186-89303556 / 0 / FLJ45537 / 337725 / DAPK1 / 148003 / No / yes / 9q34.1
RAB6C / chr2:131837470-131838248 / 5.23691 / POTE2 / 99836 / H2-ALPHA / 111915 / yes / yes / 2q21.1