1. E. Borgstrom Et Al., Phasing of Single DNA Molecules by Massively Parallel Barcoding

1. E. Borgstrom et al., Phasing of single DNA molecules by massively parallel barcoding. Nat Commun 6, 7173 (2015).

2. M. Ryden et al., Transplanted Bone Marrow-Derived Cells Contribute to Human Adipogenesis. Cell Metab 22, 408-417 (2015).

3. S. Vickovic, A. Ahmadian, R. Lewensohn, J. Lundeberg, Toward Rare Blood Cell Preservation for RNA Sequencing. J Mol Diagn 17, 352-359 (2015).

4. M. Dezfouli, S. Vickovic, M. J. Iglesias, J. M. Schwenk, A. Ahmadian, Parallel barcoding of antibodies for DNA-assisted proteomics. Proteomics 14, 2432-2436 (2014).

5. M. Dezfouli et al., Magnetic bead assisted labeling of antibodies at nanogram scale. Proteomics 14, 14-18 (2014).

6. E. Pettersson, A. Ahmadian, P. L. Stahl, A novel method for rapid hybridization of DNA to a solid support. PLoS One 8, e70504 (2013).

7. P. Zajac, A. Ahmadian, Targeted transcript profiling by sequencing. Sci Rep 2, 821 (2012).

8. A. Ardalan et al., Narrow genetic basis for the Australian dingo confirmed through analysis of paternal ancestry. Genetica 140, 65-73 (2012).

9. M. Neiman, S. Lundin, P. Savolainen, A. Ahmadian, Decoding a Substantial Set of Samples in Parallel by Massive Sequencing. PLoS One 6, (2011).

10. A. Ahmadian, H. A. Svahn, Massively parallel sequencing platforms using lab on a chip technologies. Lab Chip 11, 2653-2655 (2011).

11. J. Sandberg, M. Neiman, A. Ahmadian, J. Lundeberg, Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing. BMC Genomics 11, 140 (2010).

12. P. Zajac, C. Oberg, A. Ahmadian, Analysis of short tandem repeats by parallel DNA threading. PLoS One 4, e7823 (2009).

13. J. Sandberg, P. L. Stahl, A. Ahmadian, M. K. Bjursell, J. Lundeberg, Flow cytometry for enrichment and titration in massively parallel DNA sequencing. Nucleic Acids Res 37, e63 (2009).

14. E. Pettersson et al., Visual DNA as a diagnostic tool. Electrophoresis 30, 3691-3695 (2009).

15. E. Pettersson, J. Lundeberg, A. Ahmadian, Generations of sequencing technologies. Genomics 93, 105-111 (2009).

16. S. Lindstrom, M. Hammond, H. Brismar, H. Andersson-Svahn, A. Ahmadian, PCR amplification and genetic analysis in a microwell cell culturing chip. Lab Chip 9, 3465-3471 (2009).

17. V. Hoiom et al., MC1R variation and melanoma risk in the Swedish population in relation to clinical and pathological parameters. Pigment Cell Melanoma Res 22, 196-204 (2009).

18. P. Zajac, E. Pettersson, M. Gry, J. Lundeberg, A. Ahmadian, Expression profiling of signature gene sets with trinucleotide threading. Genomics 91, 209-217 (2008).

19. F. Suri et al., Screening of common CYP1B1 mutations in Iranian POAG patients using a microarray-based PrASE protocol. Mol Vis 14, 2349-2356 (2008).

20. E. Pettersson et al., Allelotyping by massively parallel pyrosequencing of SNP-carrying trinucleotide threads. Hum Mutat 29, 323-329 (2008).

21. P. L. Stahl et al., Visual DNA -- identification of DNA sequence variations by bead trapping. Genomics 90, 741-745 (2007).

22. M. Kaller, J. Lundeberg, A. Ahmadian, Arrayed identification of DNA signatures. Expert Rev Mol Diagn 7, 65-76 (2007).

23. E. Pettersson, M. Lindskog, J. Lundeberg, A. Ahmadian, Tri-nucleotide threading for parallel amplification of minute amounts of genomic DNA. Nucleic Acids Res 34, e49 (2006).

24. M. Kaller et al., Comparison of PrASE and Pyrosequencing for SNP Genotyping. BMC Genomics 7, 291 (2006).

25. A. Ahmadian, M. Ehn, S. Hober, Pyrosequencing: history, biochemistry and future. Clin Chim Acta 363, 83-94 (2006).

26. M. Kaller et al., Detection of MC1R polymorphisms with protease-mediated allele-specific extension as an alternative to direct sequencing. Clin Chem 51, 2388-2391 (2005).

27. M. Kaller et al., Tag-array based HPV genotyping by competitive hybridization and extension. J Virol Methods 129, 102-112 (2005).

28. E. Hultin, M. Kaller, A. Ahmadian, J. Lundeberg, Competitive enzymatic reaction to control allele-specific extensions. Nucleic Acids Res 33, e48 (2005).

29. B. Gharizadeh et al., Type-specific multiple sequencing primers: a novel strategy for reliable and rapid genotyping of human papillomaviruses by pyrosequencing technology. J Mol Diagn 7, 198-205 (2005).

30. A. Asplund et al., Genetic mosaicism in basal cell carcinoma. Exp Dermatol 14, 593-600 (2005).

31. M. Kaller, A. Ahmadian, J. Lundeberg, Microarray-based AMASE as a novel approach for mutation detection. Mutat Res 554, 77-88 (2004).

32. M. Ehn et al., Toward pyrosequencing on surface-attached genetic material by use of DNA-binding luciferase fusion proteins. Anal Biochem 329, 11-20 (2004).

33. A. Russom, A. Ahmadian, H. Andersson, P. Nilsson, G. Stemme, Single-nucleotide polymorphism analysis by allele-specific extension of fluorescently labeled nucleotides in a microfluidic flow-through device. Electrophoresis 24, 158-161 (2003).

34. B. Gharizadeh et al., Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays. Nucleic Acids Res 31, e146 (2003).

35. O. Ericsson, A. Sivertsson, J. Lundeberg, A. Ahmadian, Microarray-based resequencing by apyrase-mediated allele-specific extension. Electrophoresis 24, 3330-3338 (2003).

36. D. O'Meara, A. Ahmadian, J. Odeberg, J. Lundeberg, SNP typing by apyrase-mediated allele-specific primer extension on DNA microarrays. Nucleic Acids Res 30, e75 (2002).

37. B. Gharizadeh, T. Nordstrom, A. Ahmadian, M. Ronaghi, P. Nyren, Long-read pyrosequencing using pure 2'-deoxyadenosine-5'-O'-(1-thiotriphosphate) Sp-isomer. Anal Biochem 301, 82-90 (2002).

38. M. Ehn, A. Ahmadian, P. Nilsson, J. Lundeberg, S. Hober, Escherichia coli single-stranded DNA-binding protein, a molecular tool for improved sequence quality in pyrosequencing. Electrophoresis 23, 3289-3299 (2002).

39. A. Ahmadian et al., SNP analysis by allele-specific extension in a micromachined filter chamber. Biotechniques 32, 748, 750, 752, 754 (2002).

40. A. Ahmadian, J. Lundeberg, A brief history of genetic variation analysis. Biotechniques 32, 1122-1124, 1126, 1128 passim (2002).

41. G. Ling et al., PATCHED and p53 gene alterations in sporadic and hereditary basal cell cancer. Oncogene 20, 7770-7778 (2001).

42. A. C. Gustafsson et al., HPV-related cancer susceptibility and p53 codon 72 polymorphism. Acta Derm Venereol 81, 125-129 (2001).

43. A. Ahmadian, B. Gharizadeh, D. O'Meara, J. Odeberg, J. Lundeberg, Genotyping by apyrase-mediated allele-specific extension. Nucleic Acids Res 29, E121 (2001).

44. C. A. Garcia et al., Mutation detection by pyrosequencing: sequencing of exons 5-8 of the p53 tumor suppressor gene. Gene 253, 249-257 (2000).

45. A. Ahmadian, J. Lundeberg, P. Nyren, M. Uhlen, M. Ronaghi, Analysis of the p53 tumor suppressor gene by pyrosequencing. Biotechniques 28, 140-144, 146-147 (2000).

46. A. Ahmadian et al., Single-nucleotide polymorphism analysis by pyrosequencing. Anal Biochem 280, 103-110 (2000).

47. J. Odeberg et al., Context-dependent Taq-polymerase-mediated nucleotide alterations, as revealed by direct sequencing of the ZNF189 gene: implications for mutation detection. Gene 235, 103-109 (1999).

48. C. Williams et al., Clones of normal keratinocytes and a variety of simultaneously present epidermal neoplastic lesions contain a multitude of p53 gene mutations in a xeroderma pigmentosum patient. Cancer Res 58, 2449-2455 (1998).

49. C. Williams et al., Assessment of sequence-based p53 gene analysis in human breast cancer: messenger RNA in comparison with genomic DNA targets. Clin Chem 44, 455-462 (1998).

50. J. Odeberg et al., Cloning and characterization of ZNF189, a novel human Kruppel-like zinc finger gene localized to chromosome 9q22-q31. Genomics 50, 213-221 (1998).

51. A. Ahmadian et al., Genetic instability in the 9q22.3 region is a late event in the development of squamous cell carcinoma. Oncogene 17, 1837-1843 (1998).

52. Z. P. Ren et al., Benign clonal keratinocyte patches with p53 mutations show no genetic link to synchronous squamous cell precancer or cancer in human skin. Am J Pathol 150, 1791-1803 (1997).

53. F. Ponten et al., Genomic analysis of single cells from human basal cell cancer using laser-assisted capture microscopy. Mutat Res 382, 45-55 (1997).

54. F. Ponten et al., Molecular pathology in basal cell cancer with p53 as a genetic marker. Oncogene 15, 1059-1067 (1997).

55. Z. P. Ren et al., Human epidermal cancer and accompanying precursors have identical p53 mutations different from p53 mutations in adjacent areas of clonally expanded non-neoplastic keratinocytes. Oncogene 12, 765-773 (1996).