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Table 1 Supplementary Data. AluYg6 primers, PCR conditions, and associated human genomic diversity

Name / Accession / Chr. Loc.a / 5' Primer sequence (5'-3') / 3' Primer sequence (5'-3') / A.T.b / Human diversity / filled site / empty sitec
Yg6AH1 / AC125618.1 / 3 / TGGCTTATGGACAGAAAAGT / TAGTTTGGGTGGCAGTTATT / 55 / FP / 425 / 114
Yg6AH2 / AC104029.5 / 8 / CTGGGGGAGGAGAAAATGAG / CTTTTCCCCAATCACCATTC / 55 / FP / 506 / 195
Yg6AH3* / AC090639.6 / 11 / CTGACCCCCATAGTGAATAA / GAGCTTTTCTTTCCCAGTTT / 60 / FP / 499 / 181
Yg6AH4 / AC087292.14 / 17 / AAGGGCCTTAATGAAAAGTC / TTGCCCAGTTTATCTTCTGT / 60 / FP / 798 / 493
Yg6AH5 / AC023844.6 / 15 / TTAGGGTTGTGACAAAGTCC / ACTCAAAGAACAGCCCTTG / 60 / FP / 754 / 433
Yg6AH6 / AC022154.4 / 19 / AAGGGAGTTAGATAAGGCTCA / AGCTATTCACACTGAAACAGG / 60 / FP / 496 / 170
Yg6AH8 / AC096540.2 / 1 / Inserted in Repeats / R/R
Yg6AH9 / AF110324.2 / 8 / TGTAACGCTTTTCCGAGACG / GCCAGCACCCTGGAAAATA / 60 / FP / 496 / 180
Yg6AH11 / AF334829.1 / 9 / ATTCCTGAACCCTGGTACTT / CTTGATAATGTGGGAAAAGG / 55 / FP / 849 / 528
Yg6AH12 / AC024681.12 / 8 / CCCAGAGATCAGACCCAAAT / AGCCTCTGCAGAAACAGAAA / 60 / FP / 452 / 141
Yg6AH13 / AC110053.3 / 8 / TCCTGCACACCCTCTTATTA / ATATGTCAGGCACCCTACTG / 60 / FP / 479 / 177
Yg6AH14 / AC107018.3 / 12 / CAGACATGGTGTCAAGTACC / GAGAGGACCTCGTATGTTGA / 55 / FP / 576 / 268
Yg6AH15* / AC110614.4 / 2 / Inserted in Repeats / R/R
Yg6AH16 / AC106053.6 / 2 / GACACAGCACTAAAAGCACA / GTAAGCAATAGTTGCCCTTG / 60 / FP / 971 / 646
Yg6AH17 / AC110769.2 / 2 / CTCTCCCTAGGCAGTAGGAT / GGGATTGAACTTACCCTCTC / 55 / FP / 474 / 173
Yg6AH18 / AC011978.6 / 8 / CTCATGGAGACTTTTTCAGG / 55 / FP / 464 / 152
Yg6AH19 / AC092956.5 / 3 / TGGGGATCTGTAAAATTGAG / CTCTGTTCCCACATTTGATT / 60 / FP / 478 / 183
Yg6AH21* / AC100832.2 / 17 / Inserted in Repeats / R/R
Yg6AH22* / AC090630.10 / GATCATGTTTATTGCCAACTC / GCATTTTCCCTTCATCTTTAC / 55 / FP / 483 / 175
Yg6AH23 / AC078872.13 / 12 / GTCAAGGATGCTGCTTAGCC / GACCCTCTAGGGCAAGGTTT / 55 / FP / 431 / 113
Yg6AH25 / AC114486.2 / 1 / ATTCGGGCAGACCTTCTTCT / TTCAGGGGAAGAATGCAGAG / 55 / FP / 476 / 154
Yg6AH26 / AC108714.3 / 3 / CCAATACCTTCGTTTCAGAC / GCTGTCGTGACAAATAATCA / 55 / FP / 423 / 98
Yg6AH27 / AC112491.4 / 3 / CCAAACATTGGCAGTTTTAT / AACTTCCTGGTGTCTTTATCA / 55 / FP / 450 / 143
Yg6AH28# / AC105763.5 / 4 / TGACCCTAGTTTGGGTCTAA / TCATGCCTTCTCCATTTAGT / 60 / IF / 492 / 218
Yg6AH29 / AC025218.8 / 8 / CATCCTCGCTAGAATGAGTC / ATGCTACCTGAGAGGGAAAC / 55 / FP / 490 / 171
Yg6AH30 / AC113385.2 / 5 / TCCCTTTCTAACCTTGTGAA / TACTAGGGCCCATTTTATGA / 55 / LF / 479 / 161
Yg6AH31 / AC023772.22 / 4 / GTAGTCCCATCCTGCATCGT / CTAGGCCAGCTGGTTTTGTA / 55 / FP / 473 / 152
Yg6AH32 / AC114950.2 / 5 / CGTGCTGGACATCAGTAGTTTT / GTCAATGTGCTGACAATGTGTG / 60 / FP / 483 / 172
Yg6AH33* / AC093283.3 / 5 / GACCTGACATTTACTTCGGTA / TGAGTTAACGTTTTCTTGGA / 55 / FP / 466 / 144
Yg6AH34 / AC091976.2 / 5 / TTCCAGGGATATGTACTTGC / GCACTGTCAGAAACAGCAG / 55 / FP / 494 / 179
Yg6AH35 / AC108128.2 / 5 / AATACCAAGGCACAGTTCAC / CAGGATTTTGTTTCCTATGG / 55 / IF / 465 / 155
Yg6AH36 / AC114769.3 / 2 / AGGTAGTTTGCTTGCATTTC / AAGAAATTTGGAGAACACAGG / 55 / FP / 584 / 268
Yg6AH37 / AC104825.4 / 4 / CAGGGCACTGCTGGTTTTTA / CCCAGTTGCCCTGATTTG / 55 / FP / 500 / 190
Yg6AH38 / AC079175.24 / X / TCAAACAGTGTGAGGGTTCG / TTTCCACCTCCCTACTTCTCAA / 55 / IF / 452 / 136
Yg6AH39 / AC104776.5 / 2 / CTTCCAAGCTTACAGAACCA / TGCCATTAATCAAGGGTAAA / 55 / FP / 442 / 112
Yg6AH40* / AC093167.11 / X / GGAGCTGCGAAACTGAACTT / AGCACCTTGGTCTGATTCCA / 55 / FP / 481 / 171
Yg6AH41* / AC091214.20 / 12 / ATCAGAGAGCTTGCTGGTAG / TGTCCACCCCTACATTTAAC / 60 / FP / 456 / 145
Yg6AH42# / AC016748.3 / 2 / TGAAGGACTTTCATTGCTTT / AATATTCAACAGCCTTGCAC / 55 / FP / 478 / 178
Yg6AH43 / AC093858.2 / 4 / AATTAATCCTTTCCGGTGTT / TGTTCAAAAGGCATCTACTG / 55 / FP / 463 / 154
Yg6AH44 / AC093852.3 / 4 / GAAAATTCTGGGATGATTGA / TGAAAACTACCAAGGGTGAG / 55 / LF / 464 / 146
Yg6AH45 / AC093804.3 / 4 / TTGACAGTTTTAAGCTCCTGT / TGCAGAGAAGCAGTTGAATA / 55 / FP / 567 / 245
Yg6AH46 / AC096861.5 / 3 / TCCCAAAAAGGTAATAGAGGT / GGATTGGAAAGAAAGCATAG / 55 / FP / 478 / 158
Yg6AH47 / AC078981.19 / 3 / CATATTGCTTGGGGTGACAA / GGAGAGGCAAGACACAACAAG / 60 / FP / 473 / 168
Yg6AH48 / AC022367.34 / 12 / TTGGGGAAAACATCTTTCTTG / TGGTGAATTATGGAGGCACA / 55 / FP / 485 / 163
Yg6AH49 / AC104071.3 / 4 / CTGGTGGAATTTAACCCATA / ATCTTGACGTGCTGGATAGT / 55 / FP / 451 / 141
Yg6AH50# / AC096592.4 / 4 / GACCTCCCACTATGTCTTCA / ATGAACAGGGTTGGACTACA / 55 / FP / 580 / 278
Yg6AH51 / AC093662.4 / 7 / CAAGAGCAGAGCTTTTAGGT / GTTTGTGCTTTTTGTGTTCT / 55 / FP / 493 / 188
Yg6AH52 / AC097492.6 / 4 / Inserted in Repeats / R/R
Yg6AH53 / AC098851.5 / 7 / AGAAGATTTTAACAGGACCCAGAG / CCAGATTTTCCTGTTTCTGATATG / 60 / Paralog / 692 / 103
Yg6AH55 / AC009117.7 / 16 / ATGGCAAGGAATGATATGAG / CCTGGAATGTTCTTTCCTTA / 60 / IF / 492 / 165
Yg6AH56 / AC027779.10 / 11 / AAGCACCAAAGCTTCTCTTA / GGGTCATCCTCAGTAAAACA / 60 / FP / 481 / 167
Yg6AH57 / AC100802.2 / 8 / ATTTTGCAAGGTGCTAGTGT / ACTCTGGGCAGATGAATTAC / 55 / FP / 449 / 127
Yg6AH58 / AC100784.2 / 8 / TGCATAGGCAAATGTGGT / ATGACTGCTATGTTCAAGCTC / 55 / FP / 687 / 380
Yg6AH59 / AC011709.11 / 18 / CACACACACATAGAGGTCCA / GAGCCATCTTTTTGTTCAAG / 60 / FP / 464 / 155
Yg6AH60 / AC068127.6 / 4 / GGAAAGTGTGAAGCTGATTT / ATATGTATGGCCTGAGCATT / 60 / FP / 486 / 177
Yg6AH62 / AC026448.5 / 4 / CTTCACCAGGTATGGATGAC / ATTTGAGATCAGCCAGGTAA / 55 / FP / 490 / 152
Yg6AH63 / AC021180.6 / 4 / TCCCTGTTTTACGTATGAGG / ATGTCCAGAATGCTCTTGTT / 55 / FP / 441 / 131
Yg6AH64# / AC079616.4 / 4 / GCACCCTTAGGAAATCAATA / GACAAATGGAAATTCAGCAT / 55 / FP / 445 / 155
Yg6AH65 / AC073210.8 / 7 / TCTGTATGCTTCCCTAGTGC / TGAGAGGAAAAAGGCAGTCT / 60 / FP / 461 / 138
Yg6AH66 / AC013269.10 / 2 / Inserted in Repeats / R/R
Yg6AH68 / AC079145.4 / 2 / AGAACACTGCCTGTCATATTT / AACCCTACAGAGCTGTTTGA / 60 / FP / 470 / 162
Yg6AH69# / AC084866.5 / 4 / GGTGTATATGTGGGCAACAA / CCCAAAGCCCTTTAATACTT / 55 / FP / 614 / 346
Yg6AH70 / AC093589.3 / 4 / AAGGAAAGTTGGGAAGAGTT / CCTCTTGTGGCTTCTTAAAT / 60 / FP / 498 / 177
Yg6AH71 / AC004873.3 / 1 / Inserted in Repeats / R/R
Yg6AH72 / AC055820.7 / 18 / CCCTTTTAGCTCTTCCTTTC / CATCACCAAATTACTTTGTCC / 55 / FP / 483 / 168
Yg6AH76 / AC067902.6 / 11 / CAGGGAGCTTATTGGAAGTAT / CCCAAGCAAATGTATATATCG / 55 / FP / 590 / 284
Yg6AH77# / AC010207.18 / 3 / TGTGTCCCATTTTGTGAATA / CCTGACCATCATTCAACTCT / 55 / FP / 465 / 243
Yg6AH78 / AC034205.4 / 5 / Inserted in Repeats / R/R
Yg6AH79 / AC008807.10 / 5 / GACAGTATCCATAAACAAGTGTAAC / TGAAATATTGCACAGCAGTT / 55 / FP / 494 / 188
Yg6AH81 / AC007502.5 / 16 / CAAGGGCAGGTATATATGGA / TAATGTTGCTTTGAGTTGCT / 55 / FP / 477 / 154
Yg6AH82 / AC039057.8 / 15 / CTATCAAGACTCGGTTCAAATGTC / CCCATTCTAGTAATAGGGACATGC / 60 / FP / 488 / 180
Yg6AH83 / AC025040.7 / 15 / ACTTCAGCTGTGAAGCTGTT / TACACACCAGGGTTGTCTTT / 60 / FP / 448 / 122
Yg6AH85 / AC009950.6 / 2 / CACAGGTTAAATCCAGCCTA / GTGTGTTCCAAAAACAATCT / 55 / FP / 484 / 167
Yg6AH86 / AC020595.7 / 2 / AACAAGCCTTGGTAGTGAAG / ACCCAAGTGTCCTCTGTATG / 55 / LF / 481 / 166
Yg6AH88 / AC005798.10 / 4 / ACCTTTTGGTCCGGTTCTCT / TGGAAGATAATGTTGAAGAGAGCTA / 55 / FP / 423 / 100
Yg6AH89 / AC084783.2 / 15 / AAACAAGCAGAAGAAGGCTA / ATACCTCCGTTTTCATTCAT / 55 / FP / 511 / 209
Yg6AH90 / AC021752.5 / 15 / TCGCTTTCAACTAAAAATGG / CAAGGAAAAGCATTTGTATC / 55 / FP / 696 / 86
Yg6AH91* / AC007246.3 / 2 / GCTACCTTCGGTCAGTGTTA / ATTTGAAGCTAAGGGTGACA / 50 / FP / 500 / 191
Yg6AH93 / AC007682.3 / 2 / TGCAGCTGTTTTCTCCTATT / GGGCCACACATAAAATACAC / 55 / FP / 498 / 199
Yg6AH94 / AC006333.3 / 7 / ATCAGACTGTTTCCCCTCTT / CACCTGACTCTTACTGTCCTTC / 55 / FP / 579 / 253
Yg6AH95 / AC010086.4 / Y / CCTAATGGTGTTCAGTGGCATTAT / GTGTTGCTTTGCACTCTTCTATTC / 55 / FP / 563 / 251
Yg6AH96 / AC006320.4 / 7 / CCTGCTGAGTAAGTGAGGTC / TCCTAGAGCATGTCAGGAAT / 55 / FP / 472 / 152
Yg6AH97 / AL356362.21 / 1 / CCTGATAGTGTCCCACTGAC / ATCAACTGAGGCACCACTAC / 55 / FP / 494 / 181
Yg6AH98 / AC012150.16 / 12 / GCACCATCGATGAAATAAAT / ATGGTCAGAGAGCAGACATT / 60 / IF / 497 / 181
Yg6AH99 / AL832143.1 / 6 / CGGATAGGTTCTTGTTTGAG / GCAACATTTAGCATTTTCAC / 60 / IF / 470 / 146
Yg6AH100* / AL773604.1 / 21 / CTATGCAGGGGTTTAATGATTTTC / TACCATTTCTTGGTATCCTGGTTT / 55 / FP / 450 / 138
Yg6AH101 / AL731543.9 / 10 / AGTGGACACAGTAAGGGAAG / ACAGTGGCAATGCTCTATCT / 55 / FP / 423 / 102
Yg6AH102 / AL731765.5 / X / CCACATCTTTTCCTTCATCA / AAATCATGTTATCCCACCAT / 55 / FP / 482 / 168
Yg6AH103* / AL669818.11 / 9 / GCTTCAGTGCCAATTTCTTAGGTA / GCTGTGTCCTAGTTCTCTTTACCC / 60 / FP / 446 / 143
Yg6AH104 / AC006323.3 / 7 / CAAACCCATTACCCTTAATA / TTCCAACCACACAGAATAGT / 60 / FP / 500 / 170
Yg6AH105 / AL442071.29 / 1 / TTTTCAGCAATTTTGTGAGC / AATGAACAGCTTTGAGGATG / 60 / FP / 590 / 288
Yg6AH106 / AL031601.3 / 10 / AGGTGCTGATATCTGGTGAG / GGCATTTGGAAATAAGATCA / 60 / FP / 962 / 549
Yg6AH107 / AL139342.7 / 1 / TGGATCCTAAGTCTGAAAAATC / AGTTGGTGGTTACAGAGGTG / 60 / FP / 498 / 183
Yg6AH108* / AL450304.33 / 1 / CATGGTTAGGAAAACCAGAG / GCTTTGTCATAAAACCACCT / 60 / IF / 487 / 186
Yg6AH109 / AL136137.15 / X / Inserted in Repeats / R/R
Yg6AH110 / AL583826.16 / 1 / GTTCAGAAAGGGCAACTTTA / TGTGCAACTAGCATCACAAT / 60 / FP / 460 / 150
Yg6AH111 / AL627443.6 / 6 / CCACATTCTATAATGACAGCCTTG / TTCGATTTTCCTTACCCTATGAAG / 60 / FP / 521 / 206
Yg6AH112 / AL441928.12 / 9 / ATCCATGCAACTCATTTCTTGAG / GAGACCATCCACTTACATTTCCAT / 60 / FP / 433 / 121
Yg6AH114* / AL591866.13 / 1 / Inserted in Repeats / R/R
Yg6AH115 / AL355138.19 / 10 / AGTAATTAATGCCACTGAGCTAC / ATATATGCAATTCGGTGGTT / 55 / FP / 562 / 257
Yg6AH116# / AL603757.5 / 6 / GAGGCTAGGGAGAAGGAAAATTAG / ATATTCAACAGGAGCCATGTGAG / 60 / FP / 499 / 334
Yg6AH117 / AL451138.5 / 9 / CTCCCAACCCATTTACTATTGTGT / ATCCAAGTAACCAAAACCACTTGT / 60 / FP / 493 / 188
Yg6AH118 / AL592157.4 / X / CACACACACACACAGGGTATAAGA / AGTACCCCATTTTTACAAGTGCAT / 60 / HF / 416 / 113
Yg6AH119 / AC009181.5 / 7 / CTCCACTTTTTCCTTGACTG / AATCATTCCAAACTTCCTTG / 60 / FP / 462 / 126
Yg6AH120 / AL133481.13 / 10 / GGACCTGTAGCCACAATACA / GCATTTTCTCATGCACCTAT / 55 / FP / 986 / 660
Yg6AH121 / AL138814.13 / 13 / TGTTTTTCTTACCGTATTGG / TTGTTTTGAAACATGCCTAC / 55 / FP / 493 / 187
Yg6AH122 / AC004746.1 / 7 / TGGAAGTACTGAAGGACAGG / ATCTAAGACAACCGGGAAGT / 55 / FP / 450 / 135
Yg6AH124 / AL390206.14 / 10 / CTATGCTGTGCATGGCTGAT / CTGGGCAGAATTCAAGGACT / 60 / FP / 486 / 174
Yg6AH125 / AC005993.2 / 14 / TGCCTGATTAGACATGTTAGAA / GACTTATCAGGTCTGAGATGAAG / 55 / FP / 648 / 336
Yg6AH126 / AC006007.1 / 7 / Inserted in Repeats / R/R
Yg6AH127 / AC007735.2 / 7 / CAGGAAAATGATCAAAGGTC / GAACCGTTCTGATTCTCAAA / 55 / FP / 494 / 182
Yg6AH128 / AC002492.1 / 16 / GTGAAGAGGAACTGGTGTGT / CCTATTCTTCCCTGTCTCCT / 55 / Paralog / 427 / 116
Yg6AH129 / AL591767.2 / 14 / CCATTCCTACTAGGGGAAGTA / ATGAGTTATAGGGCTCTTGG / 55 / FP / 486 / 169
Yg6AH131# / AL139251.13 / 1 / GAAGTGGTTGCTTTATTCAGGACT / TGTCTCTCTCACCTGTCTGTTTTC / 55 / FP / 499 / 281
Yg6AH132 / AL359739.8 / 1 / GAGCATCTTCCTCTATCTCTCTGC / AGAGTTTCGATCATAAAAGGCAAC / 60 / FP / 475 / 167
Yg6AH133 / AL356123.21 / 6 / GAAAGAATCGTATGCTGAGG / CAGACCCACTTGCTGTCTAT / 60 / IF / 553 / 229
Yg6AH134 / AC006160.9 / 4 / ACGTGCCTGAATCTAATCAT / TCAGTGGTTCCCTTTATGTC / 60 / FP / 542 / 234
Yg6AH135# / |AL445074.4 / 14 / CCAACTACACAAAGAAATTAGTGG / GAACAAGATAAGGACATGTACAAC / 55 / FP / 450 / 180
Yg6AH136 / AL352984.4 / 14 / CAGAAAGAAGGGGACAAACC / GGAAAATGGTTCTCGTTCTA / 55 / FP / 700 / 381
Yg6AH137 / AL391153.3 / 14 / GGGACAATGGTACAATAGATACTT / GAGCTATCTCAGAAAAGAATTGAG / 55 / FP / 492 / 177
Yg6AH138 / AL354707.17 / 9 / TTGTTTGTGATACCAAAGGAGCTA / CTGGTTTTGAGAACGTTACCAATTT / 55 / HF / 435 / 114
Yg6AH139 / AL121808.4 / 14 / GTTCATATTACCTGGGGAAA / TGGCCCTAATGTAGCTTTTA / 55 / FP / 497 / 165
Yg6AH140 / AL121579.4 / 14 / TACATGGAAAGCCAATTCTT / GTTGTGGGAGATGTGAGATT / 55 / FP / 442 / 123
Yg6AH141# / AL356127.8 / 6 / GAATAAAGCCAAAAGGGAGT / AACCATACTTCCAGTTTCCA / 60 / FP / 772 / 479
Yg6AH142 / AL355610.5 / 13 / ATGCCTGATGTGCCTATTAC / TTCATGGGGTATAAATCAGG / 55 / FP / 456 / 127
Yg6AH143 / AL161901.18 / 13 / TCCTGCTGCAGAACTAGATATGAT / AAAGCTACGCCTTGTGAAGTAAAC / 55 / FP / 484 / 157
Yg6AH144 / AL133419.15 / 20 / CCACTGGAAAACTCTGTAGGAACT / CAGGTTTTGAGTTGAGGAGCTT / 55 / FP / 438 / 125
Yg6AH145 / AL035258.10 / 20 / Inserted in Repeats / R/R
Yg6AH146 / AL136172.16 / 20 / Inserted in Repeats / R/R
Yg6AH147 / AL121919.20 / 20 / GCAAAGTCCCTGTTCAGTCC / CATGAGACCCAGAGTCAGCA / 60 / IF / 448 / 114
Yg6AH148 / AC006257.1 / Inserted in Repeats / R/R
Yg6AH149 / AL078597.11 / 6 / AGAAAAGGGGGAGATACAAGAGTT / TCAAGGTAAGAGGATTAGGCTGAC / 55 / FP / 454 / 143
Yg6AH150 / AC006070.1 / 17 / CACATCTGTTGATGGCCCTA / GTCATTCTCGTCCCGTTTGT / 55 / FP / 486 / 184
Yg6AH151 / AL445143.2 / 13 / GAGAGTGAGGAGAGCATCTG / TGATCTAGCCTAGTGGAGGA / 55 / FP / 462 / 133
Yg6AH152* / AL358815.12 / 9 / TAGGCTGGGAATCTGCAAAC / AGGCAGTTGGTGATTCTGCT / 51 / FP / 480 / 171
Yg6AH154 / AC004047.1 / 4 / ATGCCGTAACATCTTCAGTT / AACAACCTGCACTTCCATAC / 55 / FP / 476 / 146
Yg6AH155 / AL356473.11 / 6 / TCATAGGATTTGGGAATTTG / CCCAGAAGAACAGACAGAAG / 55 / FP / 473 / 165
Yg6AH156 / AL358214.10 / 10 / GTTTTCAGCATTTTCGTCTT / TGAATCAGTGGGAACACATA / 55 / FP / 530 / 222
Yg6AH157 / AC004518.1 / 14 / CCAAACTTCATTTGACCAGT / CAGACTTCTTTTTCCCTTCA / 55 / FP / 468 / 146
Yg6AH158 / AC005217.1 / 5 / AATATAGCCACCCTCCTCTC / ACTTCCCAATCAAAACACAG / 60 / FP / 484 / 170
Yg6AH159 / AL121975.9 / 6 / Inserted in Repeats / R/R
Yg6AH160 / AL353700.14 / 6 / TCAGAGGAAGGATGGGCTTA / TTCTCCCCTTGATTATTGGTTT / 60 / LF / 596 / 281
Yg6AH161# / AC004648.1 / 5 / AGGGTATGATGTTAAGTGTGTTGC / GAGAGGAACACACCAGGAATACTT / 60 / FP / 482 / 190
Yg6AH162# / AC004091.1 / 7 / AGTCAATATAGGGGCCTTTC / ATACAACTTGATGGGTTTGC / 60 / FP / 455 / 253
Yg6AH163 / AL109920.15 / 6 / ATACGAAGTTCATCACGGTTCT / GTACCCAACATTGAAGTTCTTT / 55 / FP / 580 / 265
Yg6AH165 / AL163218.2 / 21 / CTCAAGGAAAGTTGTAGACACA / AATAGTTAGGGAAATGGAGGTT / 55 / FP / 473 / 161
Yg6AH166 / AL163202.2 / 21 / Inserted in Repeats / R/R
Yg6AH167 / Z99716.4 / 22 / GCCGAGCACTGTTCTAAACTT / ACCTGCAGGGTAAACTAGGAAG / 60 / FP / 549 / 238
Yg6AH168 / AC002558.1 / 17 / TGTTTTTGCCTACTAAGTCTGT / AGGAATGCAAAAATATCCAG / 55 / FP / 805 / 447
Yg6AH170 / AL034380.26 / 1 / Inserted in Repeats / R/R
Yg6AH171 / AL050333.18 / 6 / Inserted in Repeats / R/R
Yg6AH172 / AL121718.8 / 6 / Inserted in Repeats / R/R
Yg6AH173 / AL049860.8 / 6 / TGGATCCAAACCACTGTATC / ATCCCAGAAATGTCACAGTC / 55 / FP / 489 / 168
Yg6AH174 / Z68323.2 / 22 / CAAACTCTCACAGGACCATT / AGGAGCTCTACACTTTGCTG / 55 / FP / 430 / 137
Yg6AH175* / AL022337.19 / 22 / GTGGTCGCTGTGTGTAATACATCT / AGGAGCATTGGAAGTTGTCAGTAT / 60 / FP / 473 / 156
Yg6AH176 / AL033521.2 / 6 / GTGTCAGTGGAGACCAAACT / TGGGTTTTCTGTTATGTTCC / 60 / FP / 583 / 265
Yg6AH177 / AP000474.2 / 21 / GGAACTCTGAACCTCACTCTT / GAAGATGGGACCAACTGATT / 60 / FP / 449 / 141
Yg6AH179 / AP001929.4 / 11 / GCTTGGGAGTTAGAAGAAGGTACA / AGTGTTAGCCATGGGTATTACCAG / 60 / FP / 777 / 471
Yg6AH183# / AP002376.3 / 11 / CCAGGCAGATAGTGCTAAGT / GCTTAAGTTACCCAACGTCA / 55 / FP / 447 / 148
Yg6AH187 / AP003438.2 / 8 / TCTTGGCTATGACACCAAATACAC / ATACCTTTCCAGGAATACCTGCTT / 55 / FP / 461 / 154

* AluYg6 elements that have only 5 of the six diagnostic mutations of the subfamily # AluYg6 elements that has 5’ and/or 3’ truncation. The level of insertion polymorphism was determined as: Low frequency (LF) - the absence of the element from all individuals tested, except one or two heterozygous individuals. Intermediate frequency (IF) - the Aluelement is variable as to its presence or absence in at least one population. High frequency (HF)– the element is present in all individuals in all populations tested, except for one or two heterozygous or absent individuals. Fixed present (FP)- the element is present in all individuals in all populations tested. ( R/R)- the element inserted inside other repetitive elements. a- Chromosomal location. b- Annealing temperature c- Empty product size calculated by removing the Alu element and one direct repeat from filled sites that were identified.